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Sreenu, V.B. and Alevoor, V. and Nagaraju, J. and Nagarajaram, H.A. (2003) MICdb: database of prokaryotic microsatellites. Nucleic Acids Research, 31 (1). pp. 106-108. ISSN 1362-4962

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Abstract

The MICdb (Microsatellites Database) (http://www.cdfd.org.in/micas) is a comprehensive relational database of non-redundant microsatellites extracted from fully sequenced prokaryotic genomes. The current version (1.0) of the database has been compiled from 83 genomes belonging to different phylogenetic groups. This database has been linked to MICAS, the web-based Microstatellite Analysis Server. MICAS provides a user-friendly front-end to systematically extract data on microsatellite tracts from genomes. The database contains the following information pertaining to the microsatellites: the regions (coding/non-coding, if coding, their GenBank annotations) containing microsatellite tracts; the frequencies of their occurrences, the size and the number of repeating motifs; and the sequences of the tracts. MICAS also provides an interface to Autoprimer, a primer design program to automatically design primers for selected microsatellite loci.

Item Type: Article
Subjects: Computational Biology
Depositing User: Dr P Divakar
Date Deposited: 08 Jun 2015 09:50
Last Modified: 07 Oct 2015 07:09
URI: http://cdfd.sciencecentral.in/id/eprint/152

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