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Archak, S. and Meduri, E. and Kumar, P.S. and Nagaraju, J. (2007) InSatDb: a microsatellite database of fully sequenced insect genomes. Nucleic Acids Research, 35 (Suppl). D36-D39. ISSN 0305-1048

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Abstract

InSatDb presents an interactive interface to query information regarding microsatellite characteristics per se of five fully sequenced insect genomes (fruit-fly, honeybee, malarial mosquito, red-flour beetle and silkworm). InSatDb allows users to obtain microsatellites annotated with size (in base pairs and repeat units); genomic location (exon, intron, up-stream or transposon); nature (perfect or imperfect); and sequence composition (repeat motif and GC%). One can access microsatellite cluster (compound repeats) information and a list of microsatellites with conserved flanking sequences (microsatellite family or paralogs). InSatDb is complete with the insects information, web links to find details, methodology and a tutorial. A separate ‘Analysis’ section illustrates the comparative genomic analysis that can be carried out using the output. InSatDb is available at www.cdfd.org.in/insatdb.

Item Type: Article
Depositing User: Dr P Divakar
Date Deposited: 18 Aug 2015 11:11
Last Modified: 23 Oct 2015 11:01
URI: http://cdfd.sciencecentral.in/id/eprint/357

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