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Mudunuri, S.B. and Kumar, P. and Appa Rao, A. and Pallamsetty, S. and Nagarajaram, H.A. (2010) G-IMEx: A comprehensive software tool for detection of microsatellites from genome sequences. Bioinformation, 5 (5). pp. 221-3. ISSN 0973-2063

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Abstract

Microsatellites are ubiquitous short tandem repeats found in all known genomes and are known to play a very important role in various studies and fields including DNA fingerprinting, paternity studies, evolutionary studies, virulence and adaptation of certain bacteria and viruses etc. Due to the sequencing of several genomes and the availability of enormous amounts of sequence data during the past few years, computational studies of microsatellites are of interest for many researchers. In this context, we developed a software tool called Imperfect Microsatellite Extractor (IMEx), to extract perfect, imperfect and compound microsatellites from genome sequences along with their complete statistics. Recently we developed a user-friendly graphical-interface using JAVA for IMEx to be used as a stand-alone software named G-IMEx. G-IMEx takes a nucleotide sequence as an input and the results are produced in both html and text formats. The Linux version of G-IMEx can be downloaded for free from http://www.cdfd.org.in/imex.

Item Type: Article
Depositing User: Dr P Divakar
Date Deposited: 01 Sep 2015 05:00
Last Modified: 10 Dec 2015 11:18
URI: http://cdfd.sciencecentral.in/id/eprint/420

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