%PDF-1.6
%
1 0 obj
<>
endobj
2 0 obj
<>stream
Soumya Rao, Madhusudan R. Nandineni
Genome sequencing and comparative genomics reveal a repertoire of putative pathogenicity genes in chilli anthracnose fungus Colletotrichum truncatum
www.plosone.org
www.plosone.org
endstream
endobj
3 0 obj
<>/XObject<>>>/CropBox[0 0 612 792]/MediaBox[0 0 612 792]/Parent 12 0 R/Annots 13 0 R/Contents 14 0 R/TrimBox[0 0 612 792]>>
endobj
13 0 obj
[15 0 R 16 0 R 17 0 R 18 0 R 19 0 R 20 0 R 21 0 R 22 0 R 23 0 R 24 0 R 25 0 R 26 0 R 27 0 R 28 0 R 29 0 R 30 0 R 31 0 R 32 0 R 33 0 R 34 0 R 35 0 R 36 0 R 37 0 R 38 0 R 39 0 R 40 0 R 41 0 R 42 0 R 43 0 R 44 0 R 45 0 R 46 0 R 47 0 R 48 0 R 49 0 R 50 0 R 51 0 R]
endobj
15 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref002)>>
endobj
16 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref003)>>
endobj
17 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref004)>>
endobj
18 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref005)>>
endobj
19 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref004)>>
endobj
20 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref006)>>
endobj
21 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref007)>>
endobj
22 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref008)>>
endobj
23 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref009)>>
endobj
24 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref007)>>
endobj
25 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref010)>>
endobj
26 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref011)>>
endobj
27 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref012)>>
endobj
28 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref011)>>
endobj
29 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref013)>>
endobj
30 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref014)>>
endobj
31 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref014)>>
endobj
32 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref014)>>
endobj
33 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref011)>>
endobj
34 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref013)>>
endobj
35 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref014)>>
endobj
36 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref015)>>
endobj
37 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref016)>>
endobj
38 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref017)>>
endobj
39 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref018)>>
endobj
40 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref018)>>
endobj
41 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref019)>>
endobj
42 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref020)>>
endobj
43 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref021)>>
endobj
44 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref020)>>
endobj
45 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref022)>>
endobj
46 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref023)>>
endobj
47 0 obj
<>/Border[0 0 0]/A 52 0 R>>
endobj
52 0 obj
<>
endobj
48 0 obj
<>/Border[0 0 0]/A 53 0 R>>
endobj
53 0 obj
<>
endobj
49 0 obj
<>/Border[0 0 0]/A 54 0 R>>
endobj
54 0 obj
<>
endobj
50 0 obj
<>/Border[0 0 0]/A 55 0 R>>
endobj
55 0 obj
<>
endobj
51 0 obj
<>/Border[0 0 0]/A 56 0 R>>
endobj
56 0 obj
<>
endobj
14 0 obj
[57 0 R 58 0 R 59 0 R 60 0 R 61 0 R 62 0 R 63 0 R 64 0 R 65 0 R 66 0 R 67 0 R 68 0 R 69 0 R 70 0 R 71 0 R 72 0 R 73 0 R 74 0 R 75 0 R 76 0 R 77 0 R 78 0 R 79 0 R]
endobj
57 0 obj
<>stream
q
0.83 0.64 0.02 0 k
334.8283 693.2976 m
339.5339 693.2976 l
h
f*
335.8488 667.3323 m
340.611 667.3323 l
h
f*
342.8787 667.3323 m
347.6409 667.3323 l
h
f*
229.663 654.3496 m
234.4252 654.3496 l
h
f*
307.6157 654.3496 m
312.378 654.3496 l
h
f*
286.526 641.3102 m
291.2315 641.3102 l
h
f*
498.3307 641.3102 m
503.0929 641.3102 l
h
f*
226.7717 615.3449 m
231.5339 615.3449 l
h
f*
233.8016 615.3449 m
238.5638 615.3449 l
h
f*
468.6803 602.3055 m
473.4425 602.3055 l
h
f*
470.3244 589.3228 m
479.8488 589.3228 l
h
f*
381.2598 563.3008 m
390.7843 563.3008 l
h
f*
552.189 563.3008 m
561.7134 563.3008 l
h
f*
263.8488 537.3354 m
273.3732 537.3354 l
h
f*
267.7039 472.3087 m
277.2283 472.3087 l
h
f*
284.0315 472.3087 m
293.5559 472.3087 l
h
f*
203.4142 446.3433 m
212.9386 446.3433 l
h
f*
245.0835 368.3339 m
254.6079 368.3339 l
h
f*
430.5827 342.3118 m
440.1071 342.3118 l
h
f*
375.0803 329.3291 m
384.6047 329.3291 l
h
f*
538.6961 329.3291 m
548.2205 329.3291 l
h
f*
311.5843 290.3244 m
321.052 290.3244 l
h
f*
323.3197 290.3244 m
332.8441 290.3244 l
h
f*
255.2882 134.3055 m
264.8126 134.3055 l
h
f*
280.4031 95.3008 m
289.9276 95.3008 l
h
f*
367.1433 95.3008 m
376.6677 95.3008 l
h
f*
378.8787 95.3008 m
388.4031 95.3008 l
h
f*
451.9559 95.3008 m
461.4803 95.3008 l
h
f*
380.9764 82.3181 m
390.5008 82.3181 l
h
f*
402.9165 82.3181 m
412.4409 82.3181 l
h
f*
470.778 82.3181 m
480.3024 82.3181 l
h
f*
543.8551 82.3181 m
553.3795 82.3181 l
h
f*
0 g
1 j
1 J
0 w
10 0 0 10 200.0125 707.4141 cm
BT
/F8 1 Tf
1 TL
-0.004 Tc
0 0 Td
(factor)Tj
2.5398 0 Td
(and)Tj
1.7291 0 Td
(major)Tj
2.6079 0 Td
(constraint)Tj
4.2802 0 Td
(to)Tj
1.0262 0 Td
(chilli)Tj
2.1997 0 Td
(cultivation)Tj
4.49 0 Td
(has)Tj
1.542 0 Td
(been)Tj
2.1203 0 Td
(fruit)Tj
1.9729 0 Td
(rot)Tj
1.4003 0 Td
(or)Tj
1.0942 0 Td
(anthracnose)Tj
5.1023 0 Td
(disease)Tj
-32.1049 -1.3039 Td
(caused)Tj
2.9139 0 Td
(by)Tj
/F7 1 Tf
1.1849 0 Td
[()-2(\n)10()4()4()8(\r)11(\n)12(\r)7()-9()4()13()18()12()]TJ
/F8 1 Tf
6.0434 0 Td
(species)Tj
2.9991 0 Td
([)Tj
0.83 0.64 0.02 0 k
(2)Tj
0 g
(],)Tj
1.5987 0 Td
(a)Tj
0.652 0 Td
(large)Tj
2.16 0 Td
(genus)Tj
2.5455 0 Td
(belonging)Tj
4.2009 0 Td
(to)Tj
1.0261 0 Td
(the)Tj
1.4684 0 Td
(family)Tj
2.7325 0 Td
(Glomerellaceae)Tj
-29.5254 -1.2982 Td
(\(Glomerellales,)Tj
6.2475 0 Td
(Sordariomycetes\))Tj
7.2283 0 Td
(of)Tj
1.0148 0 Td
(Ascomycota.)Tj
5.3574 0 Td
(It)Tj
0.8561 0 Td
(is)Tj
0.8504 0 Td
(one)Tj
1.6951 0 Td
(of)Tj
1.0148 0 Td
(the)Tj
1.474 0 Td
(most)Tj
2.2053 0 Td
(common)Tj
3.8438 0 Td
(and)Tj
1.7291 0 Td
(important)Tj
-33.5166 -1.2983 Td
(genera)Tj
2.8856 0 Td
(of)Tj
1.0148 0 Td
(plant-pathogenic)Tj
7.0242 0 Td
(fungi)Tj
2.3187 0 Td
([)Tj
0.83 0.64 0.02 0 k
(3)Tj
0 g
(,)Tj
0.83 0.64 0.02 0 k
(4)Tj
0 g
(],)Tj
2.3017 0 Td
(with)Tj
1.9956 0 Td
(some)Tj
2.3358 0 Td
(species)Tj
2.9933 0 Td
(being)Tj
2.4321 0 Td
(endophytic)Tj
4.7169 0 Td
(on)Tj
1.2755 0 Td
(symptomless)Tj
-31.2942 -1.2983 Td
(plants)Tj
2.6248 0 Td
([)Tj
0.83 0.64 0.02 0 k
(5)Tj
0 g
(])Tj
1.3776 0 Td
(or)Tj
1.0942 0 Td
(saprotrophic)Tj
5.3234 0 Td
([)Tj
0.83 0.64 0.02 0 k
(4)Tj
0 g
(].)Tj
/F7 1 Tf
1.6044 0 Td
[()]TJ
/F8 1 Tf
(.)Tj
/F7 1 Tf
1.0659 0 Td
[()6()1()14(\r)11()22(\r)7()12()]TJ
/F8 1 Tf
3.9911 0 Td
(and)Tj
/F7 1 Tf
1.7291 0 Td
[()]TJ
/F8 1 Tf
(.)Tj
/F7 1 Tf
1.0715 0 Td
[()-2()4(\n)4()7(\n)7()10()4(\n)11()-9()4(\n)11()4()4()8()]TJ
/F8 1 Tf
6.0378 0 Td
(are)Tj
1.4513 0 Td
(often)Tj
2.2847 0 Td
(associated)Tj
4.2576 0 Td
(with)Tj
-33.9134 -1.3039 Td
(anthracnose)Tj
5.0966 0 Td
(of)Tj
1.0148 0 Td
(chilli)Tj
2.1997 0 Td
([)Tj
0.83 0.64 0.02 0 k
(6)Tj
0 g
(],)Tj
1.5987 0 Td
(but)Tj
/F7 1 Tf
1.5534 0 Td
[()]TJ
/F8 1 Tf
(.)Tj
/F7 1 Tf
1.0658 0 Td
[(\r)7()-9()12( )6()7()22(\r)7()12()]TJ
/F8 1 Tf
4.3993 0 Td
(\(previously)Tj
4.6885 0 Td
(known)Tj
3.0047 0 Td
(as)Tj
/F7 1 Tf
1.0148 0 Td
[()]TJ
/F8 1 Tf
(.)Tj
/F7 1 Tf
1.0658 0 Td
[()7()12()7()10()4()1()]TJ
/F8 1 Tf
2.7893 0 Td
([)Tj
0.83 0.64 0.02 0 k
(7)Tj
0 g
(]\))Tj
1.7178 0 Td
(is)Tj
0.8447 0 Td
(the)Tj
1.4684 0 Td
(most)Tj
2.211 0 Td
(pre-)Tj
-35.7333 -1.2982 Td
(dominant)Tj
4.1669 0 Td
(causative)Tj
3.8437 0 Td
(species)Tj
2.999 0 Td
(in)Tj
1.0375 0 Td
(major)Tj
2.6079 0 Td
(chilli)Tj
2.1996 0 Td
(growing)Tj
3.5263 0 Td
(countries)Tj
3.9458 0 Td
(in)Tj
1.0375 0 Td
(South-East)Tj
4.5694 0 Td
(Asia,)Tj
2.194 0 Td
(including)Tj
-32.1276 -1.2983 Td
(India)Tj
2.3357 0 Td
([)Tj
0.83 0.64 0.02 0 k
(8)Tj
0 g
(,)Tj
0.83 0.64 0.02 0 k
(9)Tj
0 g
(].)Tj
2.3017 0 Td
(The)Tj
1.7858 0 Td
(disease)Tj
3.0161 0 Td
(is)Tj
0.8447 0 Td
(characterized)Tj
5.5615 0 Td
(by)Tj
1.1792 0 Td
(very)Tj
1.9276 0 Td
(dark,)Tj
2.2733 0 Td
(sunken)Tj
3.1238 0 Td
(necrotic)Tj
3.4866 0 Td
(lesions)Tj
2.931 0 Td
(with)Tj
2.0012 0 Td
(concentric)Tj
-32.7682 -1.3039 Td
(rings)Tj
2.2336 0 Td
(of)Tj
1.0148 0 Td
(acervuli)Tj
3.3676 0 Td
(containing)Tj
4.524 0 Td
(characteristic,)Tj
5.7713 0 Td
(strongly)Tj
3.4753 0 Td
(curved)Tj
2.948 0 Td
(conidia)Tj
3.1918 0 Td
([)Tj
0.83 0.64 0.02 0 k
(7)Tj
0 g
(];)Tj
1.6044 0 Td
(causing)Tj
3.2428 0 Td
(both)Tj
2.0636 0 Td
(pre-)Tj
1.8822 0 Td
(and)Tj
-35.3194 -1.2983 Td
(post-harvest)Tj
5.125 0 Td
(fruit)Tj
1.9729 0 Td
(rots)Tj
1.7574 0 Td
(and)Tj
1.7292 0 Td
(reducing)Tj
3.7757 0 Td
(their)Tj
2.1089 0 Td
(quality)Tj
2.9537 0 Td
(and)Tj
1.7291 0 Td
(marketability)Tj
5.5389 0 Td
([)Tj
0.83 0.64 0.02 0 k
(10)Tj
0 g
(].)Tj
/F7 1 Tf
2.075 0 Td
[()]TJ
/F8 1 Tf
(.)Tj
/F7 1 Tf
1.0658 0 Td
[(\r)7()-9()12( )6()7()22(\r)7()12()]TJ
/F8 1 Tf
4.3993 0 Td
(is)Tj
0.8447 0 Td
(a)Tj
0.6577 0 Td
(dev-)Tj
-35.7333 -1.2983 Td
(astating)Tj
3.3278 0 Td
(pathogen)Tj
3.9401 0 Td
(of)Tj
1.0148 0 Td
(many)Tj
2.4775 0 Td
(other)Tj
2.3471 0 Td
(tropical)Tj
3.2825 0 Td
(crops)Tj
2.4037 0 Td
(and)Tj
1.7292 0 Td
(has)Tj
1.542 0 Td
(a)Tj
0.652 0 Td
(wide)Tj
2.1259 0 Td
(host)Tj
1.9106 0 Td
(range)Tj
2.4661 0 Td
(including)Tj
4.0365 0 Td
(Solana-)Tj
-33.2558 -1.3039 Td
(ceae,)Tj
2.1486 0 Td
(Brassicaceae,)Tj
5.3801 0 Td
(Fabaceae,)Tj
4.0535 0 Td
(Malvaceae,)Tj
4.6091 0 Td
(etc.)Tj
1.5931 0 Td
([)Tj
0.83 0.64 0.02 0 k
(11)Tj
0 g
(])Tj
1.8539 0 Td
(and)Tj
1.7291 0 Td
(is)Tj
0.8447 0 Td
(even)Tj
2.0693 0 Td
(reported)Tj
3.6623 0 Td
(to)Tj
1.0261 0 Td
(infect)Tj
2.4662 0 Td
(humans)Tj
3.4412 0 Td
([)Tj
0.83 0.64 0.02 0 k
(12)Tj
0 g
(].)Tj
-34.8772 -1.2982 Td
(At)Tj
1.2018 0 Td
(present,)Tj
3.3902 0 Td
(there)Tj
2.2621 0 Td
(are)Tj
1.4513 0 Td
(11)Tj
1.1679 0 Td
(major)Tj
2.6078 0 Td
(species)Tj
2.9991 0 Td
(complexes/clades)Tj
7.1546 0 Td
(and)Tj
1.7291 0 Td
(23)Tj
1.1679 0 Td
(singleton)Tj
3.8891 0 Td
(species)Tj
2.9933 0 Td
(in)Tj
1.0375 0 Td
(the)Tj
1.4683 0 Td
(genus)Tj
/F7 1 Tf
-34.52 -1.2983 Td
[()-2(\n)10()4()4()8(\r)11(\n)12(\r)7()-9()4()13()18()12()]TJ
/F8 1 Tf
6.0434 0 Td
([)Tj
0.83 0.64 0.02 0 k
(11)Tj
0 g
(].)Tj
2.0749 0 Td
(Thorough)Tj
4.269 0 Td
(characterization)Tj
6.6613 0 Td
(of)Tj
1.0148 0 Td
(the)Tj
1.4684 0 Td
(species)Tj
2.999 0 Td
(causing)Tj
3.2428 0 Td
(anthracnose)Tj
5.0967 0 Td
(and)Tj
1.7348 0 Td
(knowl-)Tj
-34.6051 -1.3039 Td
(edge)Tj
2.0579 0 Td
(of)Tj
1.0148 0 Td
(the)Tj
1.4683 0 Td
(molecular)Tj
4.2236 0 Td
(mechanism)Tj
4.8416 0 Td
(of)Tj
1.0148 0 Td
(its)Tj
1.1451 0 Td
(progression)Tj
4.921 0 Td
(is)Tj
0.8504 0 Td
(critical)Tj
2.948 0 Td
(to)Tj
1.0261 0 Td
(devise)Tj
2.6759 0 Td
(strategies)Tj
3.9231 0 Td
(to)Tj
1.0261 0 Td
(efficiently)Tj
-33.1367 -1.2983 Td
(control)Tj
3.118 0 Td
(the)Tj
1.474 0 Td
(spread)Tj
2.8517 0 Td
(of)Tj
1.0148 0 Td
(the)Tj
1.4683 0 Td
(disease.)Tj
-8.7306 -1.2982 Td
(The)Tj
/F7 1 Tf
1.7858 0 Td
[()-2(\n)10()4()4()8(\r)11(\n)12(\r)7()-9()4()13()18()12()]TJ
/F8 1 Tf
6.0434 0 Td
(species)Tj
2.999 0 Td
(use)Tj
1.5307 0 Td
(melanized)Tj
4.32 0 Td
(appressoria)Tj
4.7849 0 Td
(to)Tj
1.0261 0 Td
(penetrate)Tj
3.9628 0 Td
(host)Tj
1.9105 0 Td
(tissues)Tj
2.8177 0 Td
(and)Tj
1.7348 0 Td
(follow)Tj
-34.1119 -1.2983 Td
(host-specific)Tj
5.2327 0 Td
(infection)Tj
3.7927 0 Td
(strategy)Tj
3.3279 0 Td
(of)Tj
1.0148 0 Td
(either)Tj
2.5284 0 Td
(intracellular)Tj
5.0627 0 Td
(hemibiotrophy)Tj
6.2135 0 Td
(or)Tj
1.0998 0 Td
(subcuticular)Tj
5.1307 0 Td
(intramu-)Tj
-33.4032 -1.3039 Td
(ral)Tj
1.2642 0 Td
(necrotrophy)Tj
5.1647 0 Td
([)Tj
0.83 0.64 0.02 0 k
(13)Tj
0 g
(][)Tj
0.83 0.64 0.02 0 k
(14)Tj
0 g
(].)Tj
3.7077 0 Td
(Some)Tj
/F7 1 Tf
2.4378 0 Td
[()-2(\n)10()4()4()8(\r)11(\n)12(\r)7()-9()4()13()18()12()]TJ
/F8 1 Tf
6.0377 0 Td
(species)Tj
2.9934 0 Td
(adopt)Tj
2.5001 0 Td
(both)Tj
2.058 0 Td
(the)Tj
1.4626 0 Td
(strategies)Tj
3.9175 0 Td
(on)Tj
1.2699 0 Td
(same)Tj
2.2564 0 Td
(or)Tj
1.0941 0 Td
(dif-)Tj
-36.1641 -1.2983 Td
(ferent)Tj
2.5738 0 Td
(hosts;)Tj
2.5001 0 Td
(for)Tj
1.3833 0 Td
(example,)Tj
3.7758 0 Td
(members)Tj
3.9458 0 Td
(of)Tj
1.0148 0 Td
(the)Tj
1.4683 0 Td
(acutatum)Tj
3.9855 0 Td
(and)Tj
1.7291 0 Td
(gloeosporioides)Tj
6.48 0 Td
(species)Tj
2.9933 0 Td
(complexes)Tj
-31.8498 -1.2983 Td
([)Tj
0.83 0.64 0.02 0 k
(14)Tj
0 g
(].)Tj
2.0749 0 Td
(The)Tj
1.7801 0 Td
(initial)Tj
2.5512 0 Td
(stages)Tj
2.5625 0 Td
(of)Tj
1.0148 0 Td
(infection)Tj
3.7927 0 Td
(are)Tj
1.4457 0 Td
(similar)Tj
2.9877 0 Td
(for)Tj
1.389 0 Td
(both)Tj
2.0579 0 Td
(groups)Tj
2.9707 0 Td
(of)Tj
1.0148 0 Td
(pathogens;)Tj
4.5241 0 Td
(conidia)Tj
3.1974 0 Td
(adhere)Tj
2.9254 0 Td
(to,)Tj
-36.2889 -1.3039 Td
(and)Tj
1.7291 0 Td
(germinate)Tj
4.2689 0 Td
(on)Tj
1.2756 0 Td
(plant)Tj
2.2677 0 Td
(surfaces,)Tj
3.634 0 Td
(produce)Tj
3.5206 0 Td
(germ)Tj
2.2961 0 Td
(tubes)Tj
2.3414 0 Td
(and)Tj
1.7291 0 Td
(form)Tj
2.2053 0 Td
(appressoria)Tj
4.7849 0 Td
(which)Tj
2.6475 0 Td
(penetrate)Tj
-32.7002 -1.2982 Td
(the)Tj
1.4683 0 Td
(cuticle)Tj
2.8289 0 Td
(directly.)Tj
3.4583 0 Td
(Following)Tj
4.2179 0 Td
(penetration,)Tj
5.0853 0 Td
(in)Tj
1.0375 0 Td
(intracellular)Tj
5.057 0 Td
(hemibiotrophic)Tj
6.4516 0 Td
(infection)Tj
3.7871 0 Td
(the)Tj
1.474 0 Td
(pri-)Tj
-34.8659 -1.2983 Td
(mary)Tj
2.2903 0 Td
(biotrophic)Tj
4.4107 0 Td
(hyphae)Tj
3.1011 0 Td
(grow)Tj
2.2393 0 Td
(intracellularly)Tj
5.7543 0 Td
(within)Tj
2.8063 0 Td
(the)Tj
1.4627 0 Td
(cell)Tj
1.5534 0 Td
(lumen)Tj
2.7836 0 Td
(without)Tj
3.3222 0 Td
(killing)Tj
2.7552 0 Td
(the)Tj
1.4627 0 Td
(host)Tj
1.9049 0 Td
(pro-)Tj
-35.8467 -1.3039 Td
(toplast)Tj
2.8799 0 Td
(and)Tj
1.7292 0 Td
(subsequently)Tj
5.4084 0 Td
(give)Tj
1.8312 0 Td
(rise)Tj
1.6441 0 Td
(to)Tj
1.0204 0 Td
(secondary)Tj
4.2747 0 Td
(necrotrophic)Tj
5.4028 0 Td
(hyphae,)Tj
3.3335 0 Td
(as)Tj
1.0148 0 Td
(exemplified)Tj
4.8869 0 Td
(by)Tj
1.1849 0 Td
(most)Tj
-34.6108 -1.2983 Td
(of)Tj
1.0147 0 Td
(the)Tj
/F7 1 Tf
1.4684 0 Td
[()-2(\n)10()4()4()8(\r)11(\n)12(\r)7()-9()4()13()18()12()]TJ
/F8 1 Tf
6.0434 0 Td
(species)Tj
2.999 0 Td
(like)Tj
/F7 1 Tf
1.6498 0 Td
[()]TJ
/F8 1 Tf
(.)Tj
/F7 1 Tf
1.0715 0 Td
[()12()12( )6()4()2()18()14(\r)10()18()4()16( )18()12()]TJ
/F8 1 Tf
6.8371 0 Td
(on)Tj
/F7 1 Tf
1.2756 0 Td
[()4()6()-3()7(\n)10()12()-4()]TJ
4.0422 0 Td
[()-13()4()10()2()16()-9()-4()]TJ
/F8 1 Tf
(,)Tj
/F7 1 Tf
3.4979 0 Td
[()]TJ
/F8 1 Tf
(.)Tj
/F7 1 Tf
1.0658 0 Td
[()-8()20()16()18()12( )18()4()7(\n)10()4()]TJ
/F8 1 Tf
4.8813 0 Td
(on)Tj
-35.8467 -1.2983 Td
(maize)Tj
2.5738 0 Td
(etc.)Tj
1.5931 0 Td
([)Tj
0.83 0.64 0.02 0 k
(14)Tj
0 g
(].)Tj
2.0749 0 Td
(In)Tj
1.1112 0 Td
(contrast,)Tj
3.685 0 Td
(the)Tj
1.4683 0 Td
(subcuticular)Tj
5.1364 0 Td
(intramural)Tj
4.541 0 Td
(pathogens)Tj
4.303 0 Td
(form)Tj
2.2054 0 Td
(an)Tj
1.2018 0 Td
(intramural)Tj
4.5354 0 Td
(net-)Tj
-34.4293 -1.2982 Td
(work)Tj
2.279 0 Td
(of)Tj
1.0148 0 Td
(hyphae)Tj
3.1011 0 Td
(within)Tj
2.8176 0 Td
(the)Tj
1.4683 0 Td
(walls)Tj
2.1884 0 Td
(of)Tj
1.0148 0 Td
(epidermal)Tj
4.2519 0 Td
(and)Tj
1.7291 0 Td
(cortical)Tj
3.1918 0 Td
(cells)Tj
1.9219 0 Td
(beneath)Tj
3.3845 0 Td
(the)Tj
1.4684 0 Td
(cuticle)Tj
2.8289 0 Td
(and)Tj
1.7292 0 Td
(kill)Tj
1.4796 0 Td
(the)Tj
-35.8693 -1.3039 Td
(host)Tj
1.9105 0 Td
(cells)Tj
1.9219 0 Td
(prior)Tj
2.2563 0 Td
(to)Tj
1.0262 0 Td
(the)Tj
1.4683 0 Td
(rapid)Tj
2.3357 0 Td
(necrotrophic)Tj
5.4085 0 Td
(mycelial)Tj
3.532 0 Td
(spread)Tj
2.8573 0 Td
([)Tj
0.83 0.64 0.02 0 k
(11)Tj
0 g
(])Tj
1.8481 0 Td
(as)Tj
1.0148 0 Td
(exemplified)Tj
4.8926 0 Td
(by)Tj
/F7 1 Tf
1.1792 0 Td
[()]TJ
/F8 1 Tf
(.)Tj
/F7 1 Tf
1.0658 0 Td
[(\r)7()-9()12( )6()7()22(\r)7()12()]TJ
/F8 1 Tf
-32.7172 -1.2983 Td
(\()Tj
/F7 1 Tf
[()]TJ
/F8 1 Tf
(.)Tj
/F7 1 Tf
1.4059 0 Td
[()7()12()7()10()4()1()]TJ
/F8 1 Tf
(\))Tj
3.1295 0 Td
(on)Tj
1.2755 0 Td
(cowpea)Tj
3.2088 0 Td
(\()Tj
/F7 1 Tf
[()53()10()-8( )6()]TJ
2.914 0 Td
[()12( )13()-8()12()4()1()4()4()22(\r)11()]TJ
/F8 1 Tf
(\))Tj
5.2328 0 Td
([)Tj
0.83 0.64 0.02 0 k
(13)Tj
0 g
(])Tj
1.8481 0 Td
(and)Tj
1.7292 0 Td
(cotton)Tj
2.8062 0 Td
(\()Tj
/F7 1 Tf
[()-4(\n)7()10()7()-13()11()12()12()]TJ
4.8416 0 Td
[()18()12()5()10()14(\r)7()12()]TJ
/F8 1 Tf
3.8154 0 Td
(L.\))Tj
1.3209 0 Td
([)Tj
0.83 0.64 0.02 0 k
(14)Tj
0 g
(].)Tj
-33.5279 -1.2983 Td
(Recent)Tj
2.9593 0 Td
(studies)Tj
2.982 0 Td
(suggest)Tj
3.1238 0 Td
(that)Tj
/F7 1 Tf
1.7801 0 Td
[()]TJ
/F8 1 Tf
(.)Tj
/F7 1 Tf
1.0659 0 Td
[(\r)7()-9()12( )6()7()22(\r)7()12()]TJ
/F8 1 Tf
4.3993 0 Td
(colonises)Tj
3.8608 0 Td
(chilli)Tj
2.1996 0 Td
(through)Tj
3.4469 0 Td
(subcuticular)Tj
5.1307 0 Td
(intramural)Tj
-30.9484 -1.3039 Td
(necrotrophy)Tj
5.1703 0 Td
(with)Tj
1.9956 0 Td
(a)Tj
0.652 0 Td
(brief)Tj
2.0806 0 Td
(asymptomatic,)Tj
6.0774 0 Td
(endophytic)Tj
4.7168 0 Td
(phase)Tj
2.4832 0 Td
(after)Tj
2.0352 0 Td
(initial)Tj
2.5455 0 Td
(infection)Tj
3.7928 0 Td
(and)Tj
1.7291 0 Td
(prior)Tj
2.2563 0 Td
(to)Tj
-35.5348 -1.2982 Td
(necrotrophic)Tj
5.4028 0 Td
(development)Tj
5.4141 0 Td
([)Tj
0.83 0.64 0.02 0 k
(15)Tj
0 g
(,)Tj
0.83 0.64 0.02 0 k
(16)Tj
0 g
(].)Tj
3.2541 0 Td
(Still,)Tj
1.9786 0 Td
(it)Tj
0.7824 0 Td
(contrasts)Tj
3.821 0 Td
(with)Tj
2.0013 0 Td
(the)Tj
1.4683 0 Td
(hemibiotrophic)Tj
6.4516 0 Td
(lifestyle)Tj
3.2259 0 Td
(that)Tj
1.7801 0 Td
(is)Tj
-35.5802 -1.2983 Td
(followed)Tj
3.651 0 Td
(by)Tj
1.1792 0 Td
(most)Tj
2.2053 0 Td
(of)Tj
1.0148 0 Td
(the)Tj
/F7 1 Tf
1.4683 0 Td
[()-2(\n)10()4()4()8(\r)11(\n)12(\r)7()-9()4()13()18()12()]TJ
/F8 1 Tf
6.0435 0 Td
(species.)Tj
3.2258 0 Td
(Despite)Tj
3.2484 0 Td
(extensive)Tj
3.8835 0 Td
(efforts)Tj
2.7552 0 Td
(to)Tj
1.0262 0 Td
(devise)Tj
2.6759 0 Td
(measures)Tj
3.9458 0 Td
(for)Tj
-36.3229 -1.3039 Td
(the)Tj
1.4683 0 Td
(management)Tj
5.4311 0 Td
(and)Tj
1.7292 0 Td
(control)Tj
3.118 0 Td
(of)Tj
1.0148 0 Td
(anthracnose,)Tj
5.3178 0 Td
(it)Tj
0.788 0 Td
(has)Tj
1.5364 0 Td
(been)Tj
2.126 0 Td
(difficult)Tj
3.3505 0 Td
(to)Tj
1.0205 0 Td
(control)Tj
3.1237 0 Td
(in)Tj
1.0318 0 Td
(the)Tj
1.4684 0 Td
(field)Tj
1.9672 0 Td
(because)Tj
-34.4917 -1.2983 Td
(of)Tj
1.0147 0 Td
(increasing)Tj
4.3314 0 Td
(resistance)Tj
4.1272 0 Td
(in)Tj
1.0374 0 Td
(the)Tj
1.4684 0 Td
(pathogen)Tj
3.9401 0 Td
(populations)Tj
4.9549 0 Td
(to)Tj
1.0262 0 Td
(common)Tj
3.8437 0 Td
(fungicides)Tj
4.32 0 Td
(and)Tj
1.7291 0 Td
(non-availabil-)Tj
-31.7931 -1.2983 Td
(ity)Tj
1.2415 0 Td
(of)Tj
1.0148 0 Td
(cultivated)Tj
4.1159 0 Td
(varieties)Tj
3.5206 0 Td
(of)Tj
/F7 1 Tf
1.0148 0 Td
[()]TJ
/F8 1 Tf
(.)Tj
/F7 1 Tf
1.0715 0 Td
[()16( )18( )18()12()12()]TJ
/F8 1 Tf
3.5943 0 Td
(showing)Tj
3.5773 0 Td
(satisfying)Tj
3.9685 0 Td
(levels)Tj
2.3754 0 Td
(of)Tj
1.0148 0 Td
(resistance)Tj
4.1272 0 Td
(against)Tj
3.0331 0 Td
(the)Tj
1.4683 0 Td
(fun-)Tj
-35.138 -1.3039 Td
(gus.)Tj
1.7971 0 Td
(The)Tj
1.7858 0 Td
(lack)Tj
1.8199 0 Td
(of)Tj
1.0147 0 Td
(information)Tj
5.074 0 Td
(on)Tj
1.2756 0 Td
(the)Tj
1.4684 0 Td
(genome)Tj
3.4072 0 Td
(content)Tj
3.2711 0 Td
(and)Tj
1.7292 0 Td
(organization)Tj
5.278 0 Td
(has)Tj
1.5477 0 Td
(been)Tj
2.1203 0 Td
(a)Tj
0.652 0 Td
(limiting)Tj
-32.241 -1.2982 Td
(factor)Tj
2.5398 0 Td
(in)Tj
1.0318 0 Td
(the)Tj
1.4683 0 Td
(study)Tj
2.3868 0 Td
(of)Tj
1.0148 0 Td
(this)Tj
1.6724 0 Td
(important)Tj
4.2803 0 Td
(phytopathogen)Tj
6.2418 0 Td
(and)Tj
1.7292 0 Td
(for)Tj
1.3833 0 Td
(developing)Tj
4.6034 0 Td
(strategies)Tj
3.9175 0 Td
(aimed)Tj
2.6928 0 Td
(at)Tj
0.9468 0 Td
(lim-)Tj
-35.909 -1.2983 Td
(iting)Tj
2.0636 0 Td
(its)Tj
1.1451 0 Td
(spread.)Tj
-2.0125 -1.2983 Td
(In)Tj
1.1111 0 Td
(the)Tj
1.4684 0 Td
(post-genomics)Tj
6.0717 0 Td
(era,)Tj
1.6725 0 Td
(an)Tj
1.2019 0 Td
(increasing)Tj
4.3313 0 Td
(number)Tj
3.4185 0 Td
(of)Tj
1.0148 0 Td
(pathogenic)Tj
4.6318 0 Td
(fungi)Tj
2.3187 0 Td
(are)Tj
1.4457 0 Td
(being)Tj
2.4321 0 Td
(sequenced,)Tj
-32.3147 -1.3039 Td
(leading)Tj
3.1294 0 Td
(to)Tj
1.0261 0 Td
(the)Tj
1.4684 0 Td
(discovery)Tj
4.0138 0 Td
(of)Tj
1.0148 0 Td
(several)Tj
2.931 0 Td
(genes)Tj
2.4434 0 Td
(and)Tj
1.7292 0 Td
(virulence)Tj
3.9061 0 Td
(factors)Tj
2.9026 0 Td
(that)Tj
1.7802 0 Td
(play)Tj
1.8708 0 Td
(key)Tj
1.5988 0 Td
(roles)Tj
2.1259 0 Td
(in)Tj
1.0375 0 Td
(host)Tj
1.9105 0 Td
(infec-)Tj
-34.8885 -1.2983 Td
(tion)Tj
1.8425 0 Td
(and)Tj
1.7291 0 Td
(disease)Tj
3.016 0 Td
(progression.)Tj
5.1477 0 Td
(A)Tj
0.9014 0 Td
(number)Tj
3.4186 0 Td
(of)Tj
1.0148 0 Td
(secreted)Tj
3.4696 0 Td
(fungal)Tj
2.7325 0 Td
(effector)Tj
3.2429 0 Td
(molecules)Tj
4.1952 0 Td
(have)Tj
2.0636 0 Td
(been)Tj
2.1203 0 Td
(identi-)Tj
-34.8942 -1.2982 Td
(fied)Tj
1.7234 0 Td
(that)Tj
1.7801 0 Td
(suppress)Tj
3.6624 0 Td
(plant)Tj
2.262 0 Td
(defense)Tj
3.2145 0 Td
(responses)Tj
4.0932 0 Td
(and)Tj
1.7348 0 Td
(modulate)Tj
4.0025 0 Td
(plant)Tj
2.262 0 Td
(physiology)Tj
4.5297 0 Td
(to)Tj
1.0262 0 Td
(facilitate)Tj
3.6 0 Td
(the)Tj
1.4683 0 Td
(host)Tj
-35.3591 -1.3039 Td
(colonization)Tj
5.1873 0 Td
([)Tj
0.83 0.64 0.02 0 k
(17)Tj
0 g
(].)Tj
2.075 0 Td
(These)Tj
2.5681 0 Td
(rapidly)Tj
3.0388 0 Td
(evolving)Tj
3.5829 0 Td
(effectors)Tj
3.6057 0 Td
(help)Tj
1.9332 0 Td
(fungi)Tj
2.3187 0 Td
(adapt)Tj
2.4321 0 Td
(to)Tj
1.0262 0 Td
(highly)Tj
2.7099 0 Td
(diverse)Tj
3.0444 0 Td
(lifestyles,)Tj
-33.5223 -1.2983 Td
(and)Tj
1.7291 0 Td
(act)Tj
1.3776 0 Td
(as)Tj
1.0148 0 Td
(virulence)Tj
3.9061 0 Td
(factors)Tj
2.9027 0 Td
(governing)Tj
4.2689 0 Td
(the)Tj
1.4684 0 Td
(compatible)Tj
4.6658 0 Td
(interactions)Tj
4.9662 0 Td
(with)Tj
2.0013 0 Td
(the)Tj
1.4683 0 Td
(host.)Tj
2.1373 0 Td
(The)Tj
1.7858 0 Td
(whole)Tj
-33.6923 -1.2983 Td
(genome)Tj
3.4072 0 Td
(sequence)Tj
3.8551 0 Td
(of)Tj
1.0148 0 Td
(many)Tj
/F7 1 Tf
2.4774 0 Td
[()-2(\n)10()4()4()8(\r)11(\n)12(\r)7()-9()4()13()18()12()]TJ
/F8 1 Tf
6.0435 0 Td
(species)Tj
2.999 0 Td
(belonging)Tj
4.2009 0 Td
(to)Tj
1.0205 0 Td
(different)Tj
3.6566 0 Td
(species)Tj
2.9991 0 Td
(complexes,)Tj
-31.6741 -1.3039 Td
(viz.,)Tj
/F7 1 Tf
1.8028 0 Td
[()]TJ
/F8 1 Tf
(.)Tj
/F7 1 Tf
1.0658 0 Td
[()-8()20()16()18()12( )18()4()7(\n)10()]TJ
/F8 1 Tf
(a)Tj
4.8302 0 Td
([)Tj
0.83 0.64 0.02 0 k
(18)Tj
0 g
(],)Tj
/F7 1 Tf
2.0749 0 Td
[()]TJ
/F8 1 Tf
(.)Tj
/F7 1 Tf
1.0659 0 Td
[()18()10()-17()-8()12( )10()4()16( )18()12()]TJ
/F8 1 Tf
5.5332 0 Td
([)Tj
0.83 0.64 0.02 0 k
(18)Tj
0 g
(,)Tj
0.83 0.64 0.02 0 k
(19)Tj
0 g
(],)Tj
/F7 1 Tf
3.2541 0 Td
[()]TJ
/F8 1 Tf
(.)Tj
/F7 1 Tf
1.0658 0 Td
[(\n)11()9()11()4()1()4()4()16()20()]TJ
/F8 1 Tf
4.1613 0 Td
([)Tj
0.83 0.64 0.02 0 k
(20)Tj
0 g
(],)Tj
/F7 1 Tf
2.0806 0 Td
[()]TJ
/F8 1 Tf
(.)Tj
/F7 1 Tf
1.0658 0 Td
[()-8()-9()4()-4(\r)7()4()7(\n)10()4()]TJ
/F8 1 Tf
3.8721 0 Td
(\(previously)Tj
-31.8725 -1.2982 Td
(mis-identified)Tj
5.8563 0 Td
(as)Tj
/F7 1 Tf
1.0148 0 Td
[()]TJ
/F8 1 Tf
(.)Tj
/F7 1 Tf
1.0658 0 Td
[()-2()4(\n)4()7(\n)7()10()4(\n)11()-9()4(\n)11()4()4()8()]TJ
/F8 1 Tf
6.0434 0 Td
(Nara)Tj
2.194 0 Td
(gc5)Tj
1.5818 0 Td
([)Tj
0.83 0.64 0.02 0 k
(21)Tj
0 g
(]\))Tj
2.194 0 Td
([)Tj
0.83 0.64 0.02 0 k
(20)Tj
0 g
(],)Tj
/F7 1 Tf
2.0749 0 Td
[()]TJ
/F8 1 Tf
(.)Tj
/F7 1 Tf
1.0658 0 Td
[()-8()4(\n)11()-9()12( )6()7()6()]TJ
/F8 1 Tf
3.6454 0 Td
([)Tj
0.83 0.64 0.02 0 k
(22)Tj
0 g
(],)Tj
/F7 1 Tf
2.0806 0 Td
[()]TJ
/F8 1 Tf
(.)Tj
/F7 1 Tf
1.0658 0 Td
[()10()14()10()12()12( )6()7(\n)10()4()]TJ
/F8 1 Tf
4.1612 0 Td
([)Tj
0.83 0.64 0.02 0 k
(23)Tj
0 g
(],)Tj
ET
Q
q
1 j
1 J
0 w
576 737.1 m
36 737.1 l
36 737.6 l
576 737.6 l
f*
36 741.2598 107.1496 23.6976 re
W* n
q
107.0929 0 0 23.6409 36 741.3165 cm
q
/I0 Do
Q
Q
Q
q
0 0 612 792 re
W* n
1 j
1 J
0 w
7.9999 0 0 7.9999 322.0157 745.7952 cm
BT
/F6 1 Tf
1 TL
-0.005 Tc
0 0 Td
(Colletotrich)Tj
4.9039 0 Td
(um)Tj
1.5945 0 Td
(truncatum)Tj
/F0 1 Tf
4.5993 0 Td
(genome)Tj
3.7701 0 Td
(sequencin)Tj
4.4717 0 Td
(g)Tj
0.7653 0 Td
(and)Tj
1.8567 0 Td
(comparati)Tj
4.3158 0 Td
(ve)Tj
1.2614 0 Td
(genomics)Tj
ET
Q
q
1 j
1 J
0 w
36 48.0002 m
576 48.0002 l
576 47.5002 l
36 47.5002 l
f*
0.83 0.64 0.02 0 k
81.5811 34.9228 m
237.8835 34.9228 l
h
f*
0 g
7.9999 0 0 7.9999 36 36 cm
BT
/F0 1 Tf
1 TL
-0.005 Tc
0 0 Td
(PLOS)Tj
2.8559 0 Td
(ONE)Tj
2.3669 0 Td
(|)Tj
0.83 0.64 0.02 0 k
0.4748 0 Td
(https://doi.or)Tj
5.4142 0 Td
(g/10.137)Tj
3.8198 0 Td
(1/journal.po)Tj
5.1236 0 Td
(ne.01835)Tj
4.089 0 Td
(67)Tj
0 g
2.0906 0 Td
(August)Tj
3.2882 0 Td
(28,)Tj
1.5874 0 Td
(2017)Tj
34.0302 0 Td
(2)Tj
0.7654 0 Td
(/)Tj
0.496 0 Td
(31)Tj
ET
Q
q
0.83 0.64 0.02 0 k
1 j
1 J
0 w
36 707.6409 m
174.1039 707.6409 l
h
f*
36 696.6425 m
175.011 696.6425 l
h
f*
36 685.6441 m
169.7953 685.6441 l
h
f*
36 674.6457 m
173.1969 674.6457 l
h
f*
7.9999 0 0 7.9999 36 708.7181 cm
BT
/F11 1 Tf
1 TL
-0.025 Tc
0 0 Td
(https://figs)Tj
3.9543 0 Td
(hare.com/s/)Tj
4.4292 0 Td
(7bfd5631a)Tj
3.9898 0 Td
(c659c8f2b34)Tj
0 g
(,)Tj
0.83 0.64 0.02 0 k
-12.3733 -1.3748 Td
(https://figs)Tj
3.9543 0 Td
(hare.com/s/)Tj
4.4292 0 Td
(4c68fb7aaa3)Tj
4.7835 0 Td
(3c4db1445)Tj
0 g
(,)Tj
0.83 0.64 0.02 0 k
-13.167 -1.3748 Td
(https://figs)Tj
3.9543 0 Td
(hare.com/s/)Tj
4.4292 0 Td
(17ee5ef5ff349)Tj
5.3433 0 Td
(0eeb42f)Tj
0 g
(,)Tj
0.83 0.64 0.02 0 k
-13.7268 -1.3748 Td
(https://figs)Tj
3.9543 0 Td
(hare.com/s/)Tj
4.4292 0 Td
(6140645e2f)Tj
4.4646 0 Td
(22350ff824)Tj
0 g
(.)Tj
/F10 1 Tf
-12.8481 -2.126 Td
(Funding:)Tj
/F11 1 Tf
3.5716 0 Td
(This)Tj
1.7788 0 Td
(study)Tj
2.2677 0 Td
(was)Tj
1.7008 0 Td
(supported)Tj
3.9969 0 Td
(by)Tj
1.1126 0 Td
(the)Tj
1.3677 0 Td
(core)Tj
-15.7961 -1.3748 Td
(grants)Tj
2.5724 0 Td
(of)Tj
0.9496 0 Td
(CDFD.)Tj
2.5654 0 Td
(No)Tj
1.2827 0 Td
(additiona)Tj
3.3732 0 Td
(l)Tj
0.4182 0 Td
(funding)Tj
3.033 0 Td
(was)Tj
-14.1945 -1.3748 Td
(received)Tj
3.3023 0 Td
(for)Tj
1.2544 0 Td
(this)Tj
1.5661 0 Td
(study.)Tj
2.4875 0 Td
(SR)Tj
1.3322 0 Td
(was)Tj
1.7008 0 Td
(the)Tj
1.3749 0 Td
(recipien)Tj
2.8984 0 Td
(t)Tj
0.4819 0 Td
(of)Tj
-16.3985 -1.3748 Td
(Junior)Tj
2.5653 0 Td
(and)Tj
1.5874 0 Td
(Senior)Tj
2.615 0 Td
(Researc)Tj
2.9977 0 Td
(h)Tj
0.6945 0 Td
(Fellowships)Tj
4.5425 0 Td
(of)Tj
0.9496 0 Td
(the)Tj
-15.952 -1.3748 Td
(University)Tj
3.9189 0 Td
(Grants)Tj
2.6858 0 Td
(Commiss)Tj
3.5363 0 Td
(ion)Tj
1.3606 0 Td
(\(UGC\),)Tj
2.7638 0 Td
(India)Tj
-14.2654 -1.3749 Td
(towards)Tj
3.2102 0 Td
(the)Tj
1.3748 0 Td
(pursuit)Tj
2.8134 0 Td
(of)Tj
0.9496 0 Td
(a)Tj
0.6449 0 Td
(Ph.D.)Tj
2.2536 0 Td
(degree)Tj
2.7354 0 Td
(of)Tj
0.9497 0 Td
(the)Tj
-14.9316 -1.3748 Td
(Manipal)Tj
3.1464 0 Td
(University.)Tj
4.1457 0 Td
(The)Tj
1.5874 0 Td
(funders)Tj
3.0473 0 Td
(had)Tj
1.5874 0 Td
(no)Tj
1.1622 0 Td
(role)Tj
1.6158 0 Td
(in)Tj
-16.2922 -1.3748 Td
(study)Tj
2.2677 0 Td
(design,)Tj
2.8984 0 Td
(data)Tj
1.793 0 Td
(collection)Tj
3.7346 0 Td
(and)Tj
1.5874 0 Td
(analysis,)Tj
3.4158 0 Td
(decision)Tj
-15.6969 -1.3748 Td
(to)Tj
0.9496 0 Td
(publish)Tj
2.9197 0 Td
(or)Tj
0.9992 0 Td
(preparation)Tj
4.4433 0 Td
(of)Tj
0.9496 0 Td
(the)Tj
1.3678 0 Td
(manuscript.)Tj
/F10 1 Tf
-11.6292 -2.126 Td
(Competing)Tj
4.3795 0 Td
(interests)Tj
3.3307 0 Td
(:)Tj
/F11 1 Tf
0.4819 0 Td
(The)Tj
1.5875 0 Td
(authors)Tj
3.0401 0 Td
(have)Tj
1.963 0 Td
(declared)Tj
-14.7827 -1.3748 Td
(that)Tj
1.6228 0 Td
(no)Tj
1.1693 0 Td
(competing)Tj
4.1599 0 Td
(interests)Tj
ET
endstream
endobj
58 0 obj
<>stream
endstream
endobj
59 0 obj
<>stream
endstream
endobj
60 0 obj
<>stream
endstream
endobj
61 0 obj
<>stream
endstream
endobj
62 0 obj
<>stream
endstream
endobj
63 0 obj
<>stream
endstream
endobj
64 0 obj
<>stream
endstream
endobj
65 0 obj
<>stream
endstream
endobj
66 0 obj
<>stream
endstream
endobj
67 0 obj
<>stream
endstream
endobj
68 0 obj
<>stream
endstream
endobj
69 0 obj
<>stream
endstream
endobj
70 0 obj
<>stream
endstream
endobj
71 0 obj
<>stream
endstream
endobj
72 0 obj
<>stream
endstream
endobj
73 0 obj
<>stream
endstream
endobj
74 0 obj
<>stream
endstream
endobj
75 0 obj
<>stream
endstream
endobj
76 0 obj
<>stream
endstream
endobj
77 0 obj
<>stream
endstream
endobj
78 0 obj
<>stream
endstream
endobj
79 0 obj
<>stream
BT
10.3394 -20.7497 Td
(exist.)Tj
ET
Q
endstream
endobj
80 0 obj
<>/XObject<>>>/CropBox[0 0 612 792]/MediaBox[0 0 612 792]/Parent 12 0 R/Annots 82 0 R/Contents 83 0 R/TrimBox[0 0 612 792]>>
endobj
82 0 obj
[84 0 R 85 0 R 86 0 R 87 0 R 88 0 R 89 0 R 90 0 R 91 0 R 92 0 R 93 0 R 94 0 R]
endobj
84 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref024)>>
endobj
85 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref018)>>
endobj
86 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref020)>>
endobj
87 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref025)>>
endobj
88 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref026)>>
endobj
89 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref027)>>
endobj
90 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref002)>>
endobj
91 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref018)>>
endobj
92 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref028)>>
endobj
93 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref002)>>
endobj
94 0 obj
<>/Border[0 0 0]/A 95 0 R>>
endobj
95 0 obj
<>
endobj
83 0 obj
[96 0 R 97 0 R 98 0 R 99 0 R 100 0 R 101 0 R 102 0 R 103 0 R 104 0 R 105 0 R 106 0 R 107 0 R]
endobj
96 0 obj
<>stream
q
0.83 0.64 0.02 0 k
390.3874 706.337 m
399.9118 706.337 l
h
f*
464.8819 654.3496 m
474.4063 654.3496 l
h
f*
476.6173 654.3496 m
486.1417 654.3496 l
h
f*
488.4094 654.3496 m
497.9339 654.3496 l
h
f*
500.1449 654.3496 m
509.6693 654.3496 l
h
f*
392.0315 398.0976 m
401.4992 398.0976 l
h
f*
339.3071 333.1276 m
344.0693 333.1276 l
h
f*
551.0551 281.1402 m
560.5795 281.1402 l
h
f*
292.8189 242.1354 m
302.3433 242.1354 l
h
f*
545.4992 177.1087 m
550.2614 177.1087 l
h
f*
0 g
1 j
1 J
0 w
10 0 0 10 200.0125 707.4141 cm
BT
/F7 1 Tf
1 TL
-0.004 Tc
0 0 Td
[()]TJ
/F8 1 Tf
(.)Tj
/F7 1 Tf
1.0658 0 Td
[()-3()7(\n)12()-13()4()4()4()2()]TJ
/F8 1 Tf
3.2144 0 Td
(\(previously)Tj
/F7 1 Tf
4.6885 0 Td
[()]TJ
/F8 1 Tf
(.)Tj
/F7 1 Tf
1.0658 0 Td
[()6()1()14(\r)11()22(\r)7()12()]TJ
/F8 1 Tf
(,)Tj
4.218 0 Td
(host)Tj
1.9105 0 Td
(chilli\))Tj
2.5342 0 Td
([)Tj
0.83 0.64 0.02 0 k
(24)Tj
0 g
(],)Tj
2.0749 0 Td
(etc.,)Tj
1.8142 0 Td
(are)Tj
1.4456 0 Td
(publicly)Tj
3.4072 0 Td
(available,)Tj
3.8892 0 Td
(giving)Tj
2.6872 0 Td
(an)Tj
1.2019 0 Td
(impe-)Tj
-35.2174 -1.3039 Td
(tus)Tj
1.4059 0 Td
(to)Tj
1.0262 0 Td
(the)Tj
/F7 1 Tf
1.4683 0 Td
[()-2(\n)10()4()4()8(\r)11(\n)12(\r)7()-9()4()13()18()12()]TJ
/F8 1 Tf
6.0434 0 Td
(research.)Tj
3.7814 0 Td
(The)Tj
1.7858 0 Td
(comparative)Tj
5.1704 0 Td
(genomic)Tj
3.6737 0 Td
(analyses)Tj
3.4809 0 Td
(of)Tj
1.0148 0 Td
(important)Tj
4.2803 0 Td
(gene)Tj
2.0806 0 Td
(clas-)Tj
-35.2117 -1.2982 Td
(ses)Tj
1.3662 0 Td
(among)Tj
2.9934 0 Td
(different)Tj
/F7 1 Tf
3.6567 0 Td
[()-2(\n)10()4()4()8(\r)11(\n)12(\r)7()-9()4()13()18()12()]TJ
/F8 1 Tf
6.0434 0 Td
(species)Tj
2.9934 0 Td
(and)Tj
1.7348 0 Td
(related)Tj
2.9423 0 Td
(fungi)Tj
2.3187 0 Td
(had)Tj
1.7065 0 Td
(helped)Tj
2.8856 0 Td
(in)Tj
1.0375 0 Td
(the)Tj
1.4683 0 Td
(discovery)Tj
4.0139 0 Td
(of)Tj
1.0148 0 Td
(the)Tj
-36.1755 -1.2983 Td
(core)Tj
1.9445 0 Td
(genes)Tj
2.4435 0 Td
(conserved)Tj
4.2576 0 Td
(in)Tj
1.0374 0 Td
(the)Tj
1.4684 0 Td
(genus)Tj
/F7 1 Tf
2.5455 0 Td
[()-2(\n)10()4()4()8(\r)11(\n)12(\r)7()-9()4()13()18()12()]TJ
/F8 1 Tf
(,)Tj
6.2702 0 Td
(and)Tj
1.7291 0 Td
(the)Tj
1.474 0 Td
(expansion)Tj
4.2916 0 Td
(and)Tj
1.7291 0 Td
(contraction)Tj
4.8473 0 Td
(of)Tj
1.0148 0 Td
(cer-)Tj
-35.053 -1.2983 Td
(tain)Tj
1.7688 0 Td
(gene)Tj
2.0806 0 Td
(classes)Tj
2.8289 0 Td
(that)Tj
1.7802 0 Td
(could)Tj
2.4491 0 Td
(be)Tj
1.1509 0 Td
(attributed)Tj
4.1725 0 Td
(to)Tj
1.0262 0 Td
(their)Tj
2.1089 0 Td
(specific)Tj
3.1918 0 Td
(lifestyles)Tj
3.5887 0 Td
([)Tj
0.83 0.64 0.02 0 k
(18)Tj
0 g
(,)Tj
0.83 0.64 0.02 0 k
(20)Tj
0 g
(,)Tj
0.83 0.64 0.02 0 k
(25)Tj
0 g
(,)Tj
0.83 0.64 0.02 0 k
(26)Tj
0 g
(].)Tj
-24.9504 -1.3039 Td
(The)Tj
1.7858 0 Td
(genome)Tj
3.4072 0 Td
(of)Tj
1.0148 0 Td
(an)Tj
1.2019 0 Td
(Indian)Tj
2.8856 0 Td
(isolate)Tj
2.7553 0 Td
(of)Tj
/F7 1 Tf
1.0148 0 Td
[()]TJ
/F8 1 Tf
(.)Tj
/F7 1 Tf
1.0715 0 Td
[(\r)7()-9()12( )6()7()22(\r)7()12()]TJ
/F8 1 Tf
4.3936 0 Td
(was)Tj
1.7008 0 Td
(sequenced,)Tj
4.6091 0 Td
(and)Tj
1.7292 0 Td
(a)Tj
0.6576 0 Td
(repertoire)Tj
4.1896 0 Td
(of)Tj
1.0148 0 Td
(puta-)Tj
-34.6278 -1.2982 Td
(tive)Tj
1.661 0 Td
(pathogenicity)Tj
5.6523 0 Td
(genes)Tj
2.4434 0 Td
(like)Tj
1.6555 0 Td
(secretory)Tj
3.8494 0 Td
(proteases)Tj
3.9174 0 Td
(and)Tj
1.7292 0 Td
(cell)Tj
1.5647 0 Td
(wall)Tj
1.8255 0 Td
(degrading)Tj
4.2519 0 Td
(enzymes,)Tj
3.8891 0 Td
(candidate)Tj
-32.4394 -1.2983 Td
(effectors,)Tj
3.8267 0 Td
(secondary)Tj
4.2746 0 Td
(metabolite)Tj
4.4447 0 Td
(\(SM\))Tj
2.2677 0 Td
(biosynthesis)Tj
5.1023 0 Td
(genes,)Tj
2.6646 0 Td
(etc.,)Tj
1.8198 0 Td
(were)Tj
2.1203 0 Td
(identified,)Tj
4.286 0 Td
(which)Tj
2.6475 0 Td
(gave)Tj
2.0013 0 Td
(an)Tj
-35.4555 -1.3039 Td
(insight)Tj
2.9536 0 Td
(into)Tj
1.8369 0 Td
(different)Tj
3.6566 0 Td
(aspects)Tj
3.0388 0 Td
(of)Tj
1.0148 0 Td
(its)Tj
1.1451 0 Td
(biology,)Tj
3.3959 0 Td
(lifestyle)Tj
3.2315 0 Td
(and)Tj
1.7291 0 Td
(host)Tj
1.9106 0 Td
(specificity.)Tj
4.4333 0 Td
(The)Tj
1.7858 0 Td
(comparative)Tj
5.1704 0 Td
(geno-)Tj
-35.3024 -1.2983 Td
(mic)Tj
1.7291 0 Td
(analyses)Tj
3.4809 0 Td
(were)Tj
2.126 0 Td
(carried)Tj
3.0387 0 Td
(out)Tj
1.5534 0 Td
(between)Tj
3.5262 0 Td
(all)Tj
/F7 1 Tf
1.1452 0 Td
[()-2(\n)10()4()4()8(\r)11(\n)12(\r)7()-9()4()13()18()12()]TJ
/F8 1 Tf
6.0435 0 Td
(species)Tj
2.999 0 Td
(and)Tj
1.7291 0 Td
(other)Tj
2.3471 0 Td
(fungi)Tj
2.3187 0 Td
(with)Tj
1.9956 0 Td
(diverse)Tj
-34.0325 -1.2983 Td
(lifestyles)Tj
3.5886 0 Td
(using)Tj
2.3867 0 Td
(both)Tj
2.0637 0 Td
(genome)Tj
3.4072 0 Td
(and)Tj
1.7291 0 Td
(proteome)Tj
4.0875 0 Td
(data)Tj
1.9162 0 Td
(that)Tj
1.7745 0 Td
(was)Tj
1.7008 0 Td
(publicly)Tj
3.4072 0 Td
(available.)Tj
3.8948 0 Td
(With)Tj
2.279 0 Td
(the)Tj
1.4684 0 Td
(whole)Tj
-33.7037 -1.3039 Td
(genome)Tj
3.4015 0 Td
(sequencing)Tj
4.7112 0 Td
(of)Tj
1.0148 0 Td
(this)Tj
1.6667 0 Td
(major)Tj
2.6079 0 Td
(member)Tj
3.5773 0 Td
(of)Tj
1.0148 0 Td
(the)Tj
1.4626 0 Td
(truncatum)Tj
4.4674 0 Td
(species)Tj
2.9934 0 Td
(complex,)Tj
3.8437 0 Td
(9)Tj
0.6917 0 Td
(out)Tj
1.5477 0 Td
(of)Tj
1.0091 0 Td
(11)Tj
1.1679 0 Td
(clades)Tj
-35.1777 -1.2982 Td
(of)Tj
1.0147 0 Td
(the)Tj
1.4684 0 Td
(phylogenetic)Tj
5.3234 0 Td
(tree)Tj
1.7348 0 Td
(of)Tj
1.0148 0 Td
(the)Tj
/F7 1 Tf
1.4683 0 Td
[()-2(\n)10()4()4()8(\r)11(\n)12(\r)7()-9()4()13()18()12()]TJ
/F8 1 Tf
6.0491 0 Td
(genus)Tj
2.5455 0 Td
(presently)Tj
3.8608 0 Td
(have)Tj
2.0636 0 Td
(the)Tj
1.4683 0 Td
(genome)Tj
3.4073 0 Td
(information)Tj
-31.419 -1.2983 Td
(available,)Tj
3.8891 0 Td
(facilitating)Tj
4.456 0 Td
(further)Tj
3.033 0 Td
(genus-wide)Tj
4.7962 0 Td
(evolutionary)Tj
5.2611 0 Td
(and)Tj
1.7291 0 Td
(comparative)Tj
5.1704 0 Td
(studies.)Tj
ET
Q
q
1 j
1 J
0 w
11.9999 0 0 11.9999 200.0125 512.2204 cm
BT
/F3 1 Tf
1 TL
-0.0033 Tc
0 0 Td
(Materials)Tj
4.5071 0 Td
(and)Tj
1.989 0 Td
(methods)Tj
/F0 1 Tf
-6.4961 -1.5023 Td
(Fungal)Tj
3.2362 0 Td
(culture)Tj
3.1843 0 Td
(conditions)Tj
4.663 0 Td
(and)Tj
1.8662 0 Td
(plant)Tj
2.3575 0 Td
(infection)Tj
3.8929 0 Td
(assay)Tj
ET
Q
q
1 j
1 J
0 w
10 0 0 10 200.0125 477.1842 cm
BT
/F8 1 Tf
1 TL
-0.004 Tc
0 0 Td
(Six)Tj
/F7 1 Tf
1.4286 0 Td
[()-2(\n)10()4()4()8(\r)11(\n)12(\r)7()-9()4()13()18()12()]TJ
6.0434 0 Td
[()7()12()7()10()4()1()]TJ
/F8 1 Tf
2.7893 0 Td
(cultures)Tj
3.3959 0 Td
(that)Tj
1.7801 0 Td
(were)Tj
2.1203 0 Td
(deposited)Tj
4.0762 0 Td
(in)Tj
1.0318 0 Td
(Microbial)Tj
4.1386 0 Td
(Type)Tj
2.228 0 Td
(Culture)Tj
3.2768 0 Td
(Collection)Tj
-32.309 -1.2982 Td
(and)Tj
1.7291 0 Td
(Gene)Tj
2.33 0 Td
(Bank)Tj
2.2791 0 Td
(\(MTCC\),)Tj
3.9571 0 Td
(Institute)Tj
3.583 0 Td
(of)Tj
1.0148 0 Td
(Microbial)Tj
4.1329 0 Td
(Technology)Tj
4.9379 0 Td
(\(IMTECH\),)Tj
4.9663 0 Td
(Chandigarh,)Tj
5.2157 0 Td
(India)Tj
-34.1459 -1.2983 Td
(with)Tj
1.9955 0 Td
(MTCC)Tj
3.0501 0 Td
(no.)Tj
1.5023 0 Td
(2071,)Tj
2.3471 0 Td
(3414,)Tj
2.3471 0 Td
(8473,)Tj
2.3471 0 Td
(9691,)Tj
2.347 0 Td
(10147)Tj
2.6022 0 Td
(and)Tj
1.7291 0 Td
(10327)Tj
2.5966 0 Td
(were)Tj
2.1259 0 Td
(procured)Tj
3.8891 0 Td
(and)Tj
1.7292 0 Td
(were)Tj
2.1203 0 Td
(propagated)Tj
-32.7286 -1.3039 Td
(on)Tj
1.2755 0 Td
(potato)Tj
2.778 0 Td
(dextrose)Tj
3.5999 0 Td
(agar)Tj
1.9219 0 Td
(\(PDA,)Tj
2.7666 0 Td
(Diffco)Tj
2.7326 0 Td
(Laboratories,)Tj
5.4652 0 Td
(France\).)Tj
3.5092 0 Td
(To)Tj
1.338 0 Td
(confirm)Tj
3.4469 0 Td
(the)Tj
1.4683 0 Td
(species)Tj
2.9991 0 Td
(identity)Tj
3.3051 0 Td
(of)Tj
-36.6063 -1.2983 Td
(all)Tj
1.1451 0 Td
(the)Tj
1.4684 0 Td
(fungal)Tj
2.7326 0 Td
(cultures)Tj
3.3958 0 Td
(sourced)Tj
3.3619 0 Td
(from)Tj
2.2054 0 Td
(MTCC,)Tj
3.2768 0 Td
(internal)Tj
3.3562 0 Td
(transcribed)Tj
4.7565 0 Td
(spacer)Tj
2.7496 0 Td
(region)Tj
2.8006 0 Td
(\(ITS\))Tj
2.3301 0 Td
(of)Tj
1.0147 0 Td
(nuclear)Tj
-34.5937 -1.2982 Td
(ribosomal)Tj
4.2349 0 Td
(cistron)Tj
2.9934 0 Td
(and)Tj
1.7234 0 Td
(28S)Tj
1.6441 0 Td
(nuclear)Tj
3.1918 0 Td
(ribosomal)Tj
4.2349 0 Td
(large)Tj
2.1543 0 Td
(subunit)Tj
3.2542 0 Td
(rRNA)Tj
2.6305 0 Td
(gene)Tj
2.075 0 Td
(\(LSU\))Tj
2.6475 0 Td
(were)Tj
2.1146 0 Td
(PCR)Tj
2.0636 0 Td
(ampli-)Tj
-34.9622 -1.3039 Td
(fied)Tj
1.7234 0 Td
(using)Tj
2.3924 0 Td
(the)Tj
1.4684 0 Td
(conserved)Tj
4.2632 0 Td
(universal)Tj
3.8495 0 Td
(primer)Tj
2.9933 0 Td
(pairs)Tj
2.1714 0 Td
([)Tj
0.83 0.64 0.02 0 k
(27)Tj
0 g
(])Tj
1.8481 0 Td
(and)Tj
1.7292 0 Td
(sequenced.)Tj
-21.2427 -1.2983 Td
(The)Tj
1.7858 0 Td
(conidial)Tj
3.4412 0 Td
(suspension)Tj
4.6431 0 Td
(was)Tj
1.6951 0 Td
(prepared)Tj
3.8098 0 Td
(by)Tj
1.1792 0 Td
(adding)Tj
2.9934 0 Td
(sterile)Tj
2.6078 0 Td
(distilled)Tj
3.3846 0 Td
(water)Tj
2.4321 0 Td
(to)Tj
1.0261 0 Td
(the)Tj
1.4683 0 Td
(7)Tj
0.6974 0 Td
(day)Tj
1.6384 0 Td
(old)Tj
1.4967 0 Td
(colo-)Tj
-35.4952 -1.2983 Td
(nies)Tj
1.8198 0 Td
(on)Tj
1.2756 0 Td
(PDA)Tj
2.1996 0 Td
(and)Tj
1.7292 0 Td
(scrapping)Tj
4.1272 0 Td
(the)Tj
1.4683 0 Td
(spores)Tj
2.7609 0 Td
(off)Tj
1.304 0 Td
(the)Tj
1.4683 0 Td
(surface)Tj
3.0501 0 Td
(of)Tj
1.0148 0 Td
(the)Tj
1.4683 0 Td
(colonies)Tj
3.5036 0 Td
(using)Tj
2.3868 0 Td
(inoculation)Tj
4.7961 0 Td
(loops.)Tj
-34.3726 -1.2982 Td
(The)Tj
1.7801 0 Td
(conidia)Tj
3.1975 0 Td
(were)Tj
2.1203 0 Td
(counted)Tj
3.4752 0 Td
(using)Tj
2.3924 0 Td
(haemocytometer)Tj
6.9505 0 Td
(at)Tj
0.9525 0 Td
(different)Tj
3.6566 0 Td
(dilutions)Tj
3.7701 0 Td
(and)Tj
1.7291 0 Td
(the)Tj
1.4684 0 Td
(concentrations)Tj
-31.4927 -1.304 Td
(were)Tj
2.1203 0 Td
(adjusted)Tj
3.5773 0 Td
(to)Tj
1.0261 0 Td
(1)Tj
0.6973 0 Td
(x)Tj
0.6803 0 Td
(10)Tj
ET
Q
q
1 j
1 J
0 w
7.4999 0 0 6.6659 290.5511 351.6661 cm
BT
/F8 1 Tf
1 TL
-0.0053 Tc
0 0 Td
(6)Tj
ET
Q
q
1 j
1 J
0 w
10 0 0 10 296.3338 347.1874 cm
BT
/F8 1 Tf
1 TL
-0.004 Tc
0 0 Td
(conidia/ml.)Tj
4.8131 0 Td
(The)Tj
1.7859 0 Td
(pathogenicity)Tj
5.6522 0 Td
(assay)Tj
2.262 0 Td
(on)Tj
/F7 1 Tf
1.2756 0 Td
[()]TJ
/F8 1 Tf
(.)Tj
/F7 1 Tf
1.0658 0 Td
[()16( )18( )18()12()12()]TJ
/F8 1 Tf
3.5944 0 Td
(fruits)Tj
2.3357 0 Td
(was)Tj
1.7008 0 Td
(carried)Tj
-34.1175 -1.2982 Td
(out)Tj
1.5534 0 Td
(through)Tj
3.4412 0 Td
(wound/drop)Tj
5.2723 0 Td
(method)Tj
3.3222 0 Td
([)Tj
0.83 0.64 0.02 0 k
(2)Tj
0 g
(])Tj
1.3776 0 Td
(to)Tj
1.0205 0 Td
(inoculate)Tj
3.9004 0 Td
(conidia)Tj
3.1918 0 Td
(from)Tj
2.2054 0 Td
(different)Tj
3.6566 0 Td
(fungal)Tj
2.7326 0 Td
(cultures.)Tj
-31.674 -1.2983 Td
(Koch's)Tj
2.9253 0 Td
(postulates)Tj
4.1953 0 Td
(were)Tj
2.1203 0 Td
(tested)Tj
2.5567 0 Td
(by)Tj
1.1792 0 Td
(placing)Tj
3.1238 0 Td
(parts)Tj
2.1996 0 Td
(of)Tj
1.0148 0 Td
(lesions)Tj
2.9367 0 Td
(from)Tj
2.2054 0 Td
(inoculated)Tj
4.422 0 Td
(chillies)Tj
2.982 0 Td
(on)Tj
1.2756 0 Td
(PDA.)Tj
-31.9405 -1.3039 Td
(A)Tj
0.9071 0 Td
(highly)Tj
2.7099 0 Td
(virulent)Tj
3.3562 0 Td
(isolate)Tj
2.7551 0 Td
(of)Tj
/F7 1 Tf
1.0148 0 Td
[()]TJ
/F8 1 Tf
(.)Tj
/F7 1 Tf
1.0659 0 Td
[(\r)7()-9()12( )6()7()22(\r)7()12()]TJ
/F8 1 Tf
4.3993 0 Td
(\(MTCC)Tj
3.3902 0 Td
(no.)Tj
1.5024 0 Td
(3414\))Tj
2.4604 0 Td
(was)Tj
1.7008 0 Td
(selected)Tj
3.3449 0 Td
(for)Tj
1.3889 0 Td
(all)Tj
1.1452 0 Td
(the)Tj
1.4684 0 Td
(subse-)Tj
-33.8057 -1.2983 Td
(quent)Tj
2.5228 0 Td
(experiments.)Tj
5.3631 0 Td
(The)Tj
1.7857 0 Td
(molecular)Tj
4.218 0 Td
(phylogenetic)Tj
5.3234 0 Td
(analysis)Tj
3.3278 0 Td
(was)Tj
1.6952 0 Td
(carried)Tj
3.0387 0 Td
(out)Tj
1.5533 0 Td
(for)Tj
1.389 0 Td
(the)Tj
/F7 1 Tf
1.4684 0 Td
[()-2(\n)10()4()4()8(\r)11(\n)12(\r)7()-9()4()13()18()12()]TJ
/F8 1 Tf
-31.6854 -1.2982 Td
(species)Tj
2.9934 0 Td
(complexes)Tj
4.4106 0 Td
(based)Tj
2.4717 0 Td
(on)Tj
1.2756 0 Td
(multilocus)Tj
4.4447 0 Td
(alignment)Tj
4.269 0 Td
(of)Tj
1.0148 0 Td
(five)Tj
1.6554 0 Td
(genes)Tj
2.4434 0 Td
(used)Tj
2.058 0 Td
(in)Tj
1.0374 0 Td
(a)Tj
0.652 0 Td
(previous)Tj
3.651 0 Td
(study)Tj
2.3868 0 Td
([)Tj
0.83 0.64 0.02 0 k
(18)Tj
0 g
(])Tj
-34.7638 -1.3039 Td
(\(internal)Tj
3.6963 0 Td
(transcribed)Tj
4.7509 0 Td
(spacer)Tj
2.7551 0 Td
(of)Tj
1.0148 0 Td
(rRNA)Tj
2.6306 0 Td
(\(ITS\),)Tj
2.5511 0 Td
(chitin)Tj
2.5569 0 Td
(synthase-1)Tj
4.4503 0 Td
(\(CHS-1\),)Tj
3.8608 0 Td
(histone3)Tj
3.6283 0 Td
(\(HIS3\),)Tj
3.1861 0 Td
(actin)Tj
-35.0812 -1.2983 Td
(\(ACT\))Tj
2.8573 0 Td
(and)Tj
1.7291 0 Td
(tubulin)Tj
3.1464 0 Td
(\(TUB2\)\))Tj
3.6396 0 Td
(in)Tj
/F7 1 Tf
1.0375 0 Td
[()]TJ
/F8 1 Tf
(.)Tj
/F7 1 Tf
1.0658 0 Td
[(\r)7()-9()12( )6()7()22(\r)7()12()]TJ
/F8 1 Tf
4.3993 0 Td
(\(MTCC)Tj
3.3903 0 Td
(no.)Tj
1.4966 0 Td
(3414\))Tj
2.4662 0 Td
(and)Tj
1.7291 0 Td
(27)Tj
1.1735 0 Td
(other)Tj
/F7 1 Tf
2.3471 0 Td
[()-2(\n)10()4()4()8(\r)11(\n)12(\r)7()-9()4()13()18()12()]TJ
/F8 1 Tf
-30.4778 -1.2983 Td
(species)Tj
2.9934 0 Td
(using)Tj
2.3924 0 Td
(MEGA6)Tj
3.5546 0 Td
([)Tj
0.83 0.64 0.02 0 k
(28)Tj
0 g
(])Tj
1.8537 0 Td
(by)Tj
1.1793 0 Td
(neighbour)Tj
4.3653 0 Td
(joining)Tj
3.0841 0 Td
(\(NJ\))Tj
1.9615 0 Td
(method)Tj
3.3279 0 Td
(with)Tj
1.9955 0 Td
(1000)Tj
2.1203 0 Td
(bootstrap)Tj
4.0252 0 Td
(replicates.)Tj
/F7 1 Tf
-32.8532 -1.3039 Td
[()28(\n)11( )18()4()4(\n)4()13()6()6()8(\r)11()8()]TJ
5.828 0 Td
[()12( )11()-8()-4()-3()7()16( )]TJ
/F8 1 Tf
3.855 0 Td
(was)Tj
1.7007 0 Td
(taken)Tj
2.4208 0 Td
(as)Tj
1.0148 0 Td
(an)Tj
1.2019 0 Td
(outgroup)Tj
3.9401 0 Td
(for)Tj
1.3833 0 Td
(the)Tj
1.474 0 Td
(analysis.)Tj
-21.6224 -1.2983 Td
(Mycelia)Tj
3.3619 0 Td
(were)Tj
2.1259 0 Td
(harvested)Tj
4.0421 0 Td
(from)Tj
2.2054 0 Td
(liquid)Tj
2.5625 0 Td
(cultures)Tj
3.3958 0 Td
(grown)Tj
2.8007 0 Td
(in)Tj
1.0318 0 Td
(potato)Tj
2.7836 0 Td
(dextrose)Tj
3.5999 0 Td
(broth)Tj
2.4265 0 Td
(\(PDB\))Tj
2.7779 0 Td
(and)Tj
-34.3102 -1.2982 Td
(Czapeck's)Tj
4.1669 0 Td
(medium)Tj
3.6056 0 Td
(at)Tj
0.9525 0 Td
(28C)Tj
2.2279 0 Td
(with)Tj
1.9956 0 Td
(shaking)Tj
3.3165 0 Td
(at)Tj
0.9524 0 Td
(180)Tj
1.6498 0 Td
(rpm)Tj
1.9275 0 Td
(for)Tj
1.389 0 Td
(3)Tj
0.6916 0 Td
(days)Tj
2.0013 0 Td
(for)Tj
1.3833 0 Td
(DNA)Tj
2.3754 0 Td
(and)Tj
1.7291 0 Td
(RNA)Tj
2.2621 0 Td
(extractions,)Tj
-32.6265 -1.2983 Td
(respectively.)Tj
5.108 0 Td
(The)Tj
1.7858 0 Td
(fruits)Tj
2.3301 0 Td
(of)Tj
1.0147 0 Td
(chilli)Tj
2.1996 0 Td
(were)Tj
2.1203 0 Td
(surface)Tj
3.0501 0 Td
(sterilized)Tj
3.8211 0 Td
(with)Tj
1.9955 0 Td
(1%)Tj
1.4514 0 Td
(sodium)Tj
3.2315 0 Td
(hypochlorite)Tj
5.2894 0 Td
(and)Tj
1.7348 0 Td
(inoc-)Tj
-35.1323 -1.3039 Td
(ulated)Tj
2.6759 0 Td
(with)Tj
1.9956 0 Td
(1)Tj
0.6973 0 Td
(x)Tj
0.6859 0 Td
(10)Tj
ET
Q
q
1 j
1 J
0 w
7.4999 0 0 6.6659 270.085 182.6645 cm
BT
/F8 1 Tf
1 TL
-0.0053 Tc
0 0 Td
(6)Tj
ET
Q
q
1 j
1 J
0 w
10 0 0 10 275.811 178.1858 cm
BT
/F8 1 Tf
1 TL
-0.004 Tc
0 0 Td
(conidia/ml)Tj
4.592 0 Td
(of)Tj
1.0148 0 Td
(conidial)Tj
3.4413 0 Td
(suspension)Tj
4.6431 0 Td
(using)Tj
2.3868 0 Td
(non-wound/drop)Tj
7.2226 0 Td
(method)Tj
3.3278 0 Td
([)Tj
0.83 0.64 0.02 0 k
(2)Tj
0 g
(],)Tj
1.5988 0 Td
(cov-)Tj
-35.8069 -1.2982 Td
(ered)Tj
1.9672 0 Td
(with)Tj
1.9956 0 Td
(nylon)Tj
2.5228 0 Td
(mesh,)Tj
2.5794 0 Td
(sealed)Tj
2.6362 0 Td
(in)Tj
1.0375 0 Td
(a)Tj
0.6519 0 Td
(plastic)Tj
2.7666 0 Td
(box)Tj
1.7008 0 Td
(and)Tj
1.7291 0 Td
(incubated)Tj
4.1783 0 Td
(at)Tj
0.9524 0 Td
(room)Tj
2.4208 0 Td
(temperature)Tj
5.1307 0 Td
(for)Tj
1.3889 0 Td
(different)Tj
-33.6582 -1.2983 Td
(time)Tj
2.0295 0 Td
(points.)Tj
2.9424 0 Td
(The)Tj
1.7801 0 Td
(inoculated)Tj
4.4276 0 Td
(portions)Tj
3.5943 0 Td
(of)Tj
1.0148 0 Td
(the)Tj
1.4684 0 Td
(fruits)Tj
2.3357 0 Td
(were)Tj
2.1203 0 Td
(excised,)Tj
3.3392 0 Td
(ground)Tj
3.1691 0 Td
(in)Tj
1.0318 0 Td
(liquid)Tj
2.5625 0 Td
(nitrogen)Tj
3.651 0 Td
(and)Tj
-35.4667 -1.3039 Td
(stored)Tj
2.7099 0 Td
(at)Tj
0.9524 0 Td
(-80C)Tj
2.5738 0 Td
(until)Tj
2.1089 0 Td
(RNA)Tj
2.262 0 Td
(extraction.)Tj
ET
Q
q
1 j
1 J
0 w
11.9999 0 0 11.9999 200.0125 112.9889 cm
BT
/F0 1 Tf
1 TL
-0.0033 Tc
0 0 Td
(Genome)Tj
4.0205 0 Td
(sequencing)Tj
5.263 0 Td
(and)Tj
1.8661 0 Td
(assembly)Tj
ET
Q
q
1 j
1 J
0 w
10 0 0 10 200.0125 95.9811 cm
BT
/F8 1 Tf
1 TL
-0.004 Tc
0 0 Td
(The)Tj
1.7801 0 Td
(genomic)Tj
3.6737 0 Td
(DNA)Tj
2.3811 0 Td
(was)Tj
1.6951 0 Td
(isolated)Tj
3.2881 0 Td
(from)Tj
/F7 1 Tf
2.2054 0 Td
[()]TJ
/F8 1 Tf
(.)Tj
/F7 1 Tf
1.0658 0 Td
[(\r)7()-9()12( )6()7()22(\r)7()12()]TJ
/F8 1 Tf
4.3937 0 Td
(\(MTCC)Tj
3.3902 0 Td
(no.)Tj
1.5023 0 Td
(3414\))Tj
2.4662 0 Td
(culture)Tj
3.033 0 Td
(using)Tj
2.3924 0 Td
(DNeasy)Tj
-33.2671 -1.2982 Td
(Plant)Tj
2.3073 0 Td
(Minikit)Tj
3.2542 0 Td
(\(Qiagen,)Tj
3.6737 0 Td
(Hilden,)Tj
3.2258 0 Td
(Germany\))Tj
4.3256 0 Td
(according)Tj
4.1896 0 Td
(to)Tj
1.0205 0 Td
(the)Tj
1.474 0 Td
(manufacturer's)Tj
6.2645 0 Td
(instructions.)Tj
5.2214 0 Td
(Two)Tj
ET
Q
q
1 j
1 J
0 w
576 737.1 m
36 737.1 l
36 737.6 l
576 737.6 l
f*
36 741.2598 107.1496 23.6976 re
W* n
q
107.0929 0 0 23.6409 36 741.3165 cm
q
/I0 Do
Q
Q
Q
q
0 0 612 792 re
W* n
1 j
1 J
0 w
7.9999 0 0 7.9999 322.0157 745.7952 cm
BT
/F6 1 Tf
1 TL
-0.005 Tc
0 0 Td
(Colletotrich)Tj
4.9039 0 Td
(um)Tj
1.5945 0 Td
(truncatum)Tj
/F0 1 Tf
4.5993 0 Td
(genome)Tj
3.7701 0 Td
(sequencin)Tj
4.4717 0 Td
(g)Tj
0.7653 0 Td
(and)Tj
1.8567 0 Td
(comparati)Tj
4.3158 0 Td
(ve)Tj
1.2614 0 Td
(genomics)Tj
ET
Q
q
1 j
1 J
0 w
36 48.0002 m
576 48.0002 l
576 47.5002 l
36 47.5002 l
f*
0.83 0.64 0.02 0 k
81.5811 34.9228 m
237.8835 34.9228 l
h
f*
0 g
7.9999 0 0 7.9999 36 36 cm
BT
/F0 1 Tf
1 TL
-0.005 Tc
0 0 Td
(PLOS)Tj
2.8559 0 Td
(ONE)Tj
2.3669 0 Td
(|)Tj
0.83 0.64 0.02 0 k
0.4748 0 Td
(https://doi.or)Tj
5.4142 0 Td
(g/10.137)Tj
3.8198 0 Td
(1/journal.po)Tj
5.1236 0 Td
(ne.01835)Tj
4.089 0 Td
(67)Tj
0 g
2.0906 0 Td
(August)Tj
3.2882 0 Td
(28,)Tj
1.5874 0 Td
(2017)Tj
34.0302 0 Td
(3)Tj
0.7654 0 Td
(/)Tj
ET
endstream
endobj
97 0 obj
<>stream
endstream
endobj
98 0 obj
<>stream
endstream
endobj
99 0 obj
<>stream
endstream
endobj
100 0 obj
<>stream
endstream
endobj
101 0 obj
<>stream
endstream
endobj
102 0 obj
<>stream
endstream
endobj
103 0 obj
<>stream
endstream
endobj
104 0 obj
<>stream
endstream
endobj
105 0 obj
<>stream
endstream
endobj
106 0 obj
<>stream
endstream
endobj
107 0 obj
<>stream
BT
66.402 0 Td
(31)Tj
ET
Q
endstream
endobj
108 0 obj
<>/XObject<>>>/CropBox[0 0 612 792]/MediaBox[0 0 612 792]/Parent 12 0 R/Annots 109 0 R/Contents 110 0 R/TrimBox[0 0 612 792]>>
endobj
109 0 obj
[111 0 R 112 0 R 113 0 R 114 0 R 115 0 R 116 0 R 117 0 R 118 0 R 119 0 R 120 0 R 121 0 R 122 0 R 123 0 R 124 0 R 125 0 R 126 0 R]
endobj
111 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref029)>>
endobj
112 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref030)>>
endobj
113 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref031)>>
endobj
114 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.s008)>>
endobj
115 0 obj
<>/Border[0 0 0]/A 127 0 R>>
endobj
127 0 obj
<>
endobj
116 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref032)>>
endobj
117 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref033)>>
endobj
118 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref034)>>
endobj
119 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref035)>>
endobj
120 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref036)>>
endobj
121 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref037)>>
endobj
122 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref038)>>
endobj
123 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref039)>>
endobj
124 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref040)>>
endobj
125 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref041)>>
endobj
126 0 obj
<>/Border[0 0 0]/A 128 0 R>>
endobj
128 0 obj
<>
endobj
110 0 obj
[129 0 R 130 0 R 131 0 R 132 0 R 133 0 R 134 0 R 135 0 R 136 0 R 137 0 R 138 0 R 139 0 R 140 0 R 141 0 R 142 0 R 143 0 R 144 0 R 145 0 R]
endobj
129 0 obj
<>stream
q
0.83 0.64 0.02 0 k
424.9701 654.3496 m
434.4945 654.3496 l
h
f*
0 g
247.1811 640.4031 m
253.8142 640.4031 l
253.8142 639.8929 l
247.1811 639.8929 l
f*
269.0646 640.4031 m
274.7339 640.4031 l
274.7339 639.8929 l
269.0646 639.8929 l
f*
314.7591 640.4031 m
321.9024 640.4031 l
321.9024 639.8929 l
314.7591 639.8929 l
f*
341.6882 640.4031 m
350.589 640.4031 l
350.589 639.8929 l
341.6882 639.8929 l
f*
380.2961 640.4031 m
387.1559 640.4031 l
387.1559 639.8929 l
380.2961 639.8929 l
f*
0.83 0.64 0.02 0 k
488.4661 641.3102 m
497.9906 641.3102 l
h
f*
0 g
264.0189 627.3638 m
269.8583 627.3638 l
269.8583 626.8535 l
264.0189 626.8535 l
f*
325.3039 627.3638 m
332.674 627.3638 l
332.674 626.8535 l
325.3039 626.8535 l
f*
365.9528 627.3638 m
370.6583 627.3638 l
370.6583 626.8535 l
365.9528 626.8535 l
f*
393.6756 627.3638 m
400.3087 627.3638 l
400.3087 626.8535 l
393.6756 626.8535 l
f*
417.3165 627.3638 m
424.8 627.3638 l
424.8 626.8535 l
417.3165 626.8535 l
f*
0.83 0.64 0.02 0 k
525.2598 628.3276 m
534.7843 628.3276 l
h
f*
449.8583 348.6047 m
483.7606 348.6047 l
h
f*
271.5591 335.622 m
508.8189 335.622 l
h
f*
519.4205 322.6394 m
528.9449 322.6394 l
h
f*
442.715 309.6 m
452.1827 309.6 l
h
f*
360.3969 296.6173 m
369.9213 296.6173 l
h
f*
338.6835 283.6346 m
348.2079 283.6346 l
h
f*
290.0409 257.6126 m
299.5087 257.6126 l
h
f*
519.3071 257.6126 m
528.8315 257.6126 l
h
f*
289.9843 218.6079 m
299.5087 218.6079 l
h
f*
405.6378 205.6252 m
415.1622 205.6252 l
h
f*
0 g
522.2551 204.6614 m
527.811 204.6614 l
527.811 204.2079 l
522.2551 204.2079 l
f*
200.0126 191.6787 m
206.8157 191.6787 l
206.8157 191.1685 l
200.0126 191.1685 l
f*
240.4346 191.6787 m
245.1969 191.6787 l
245.1969 191.1685 l
240.4346 191.1685 l
f*
271.4457 191.6787 m
278.3055 191.6787 l
278.3055 191.1685 l
271.4457 191.1685 l
f*
0.83 0.64 0.02 0 k
356.7118 192.5858 m
366.2362 192.5858 l
h
f*
532.6299 107.9433 m
542.3244 107.9433 l
h
f*
0 g
1 j
1 J
0 w
10 0 0 10 200.0125 707.4141 cm
BT
/F8 1 Tf
1 TL
-0.004 Tc
0 0 Td
(short)Tj
2.2847 0 Td
(insert)Tj
2.4888 0 Td
(paired-end)Tj
4.6091 0 Td
(\(PE,)Tj
1.9162 0 Td
(average)Tj
3.2258 0 Td
(insert)Tj
2.4888 0 Td
(size)Tj
1.6838 0 Td
(of)Tj
1.0148 0 Td
(300)Tj
1.6497 0 Td
(bp)Tj
1.2416 0 Td
(and)Tj
1.7348 0 Td
(500)Tj
1.644 0 Td
(bp\),)Tj
1.8085 0 Td
(and)Tj
1.7292 0 Td
(two)Tj
1.7121 0 Td
(long)Tj
1.9842 0 Td
(insert)Tj
-33.2161 -1.3039 Td
(mate-pair)Tj
4.1328 0 Td
(\(average)Tj
3.566 0 Td
(insert)Tj
2.4888 0 Td
(size)Tj
1.6894 0 Td
(of)Tj
1.0148 0 Td
(3000)Tj
2.1203 0 Td
(bp)Tj
1.2416 0 Td
(and)Tj
1.7348 0 Td
(5000)Tj
2.1203 0 Td
(bp\))Tj
1.5874 0 Td
(genomic)Tj
3.6737 0 Td
(DNA)Tj
2.3754 0 Td
(libraries)Tj
3.4696 0 Td
(were)Tj
2.1203 0 Td
(con-)Tj
-33.3352 -1.2982 Td
(structed)Tj
3.4525 0 Td
(and)Tj
1.7291 0 Td
(sequenced)Tj
4.3824 0 Td
(on)Tj
1.2756 0 Td
(the)Tj
1.474 0 Td
(Illumina)Tj
3.6453 0 Td
(HiSeq)Tj
2.6646 0 Td
(2000)Tj
2.1203 0 Td
(platform)Tj
3.702 0 Td
(\(2x100)Tj
2.9253 0 Td
(bp)Tj
1.2473 0 Td
(reads\))Tj
2.6758 0 Td
(at)Tj
0.9525 0 Td
(Cofactor)Tj
-32.2467 -1.2983 Td
(Genomics)Tj
4.2859 0 Td
(\(St.)Tj
1.5591 0 Td
(Louis,)Tj
2.6475 0 Td
(MO,)Tj
2.0806 0 Td
(USA\).)Tj
2.6816 0 Td
(The)Tj
1.7858 0 Td
(demultiplexed)Tj
5.93 0 Td
(reads,)Tj
2.5625 0 Td
(filtered)Tj
3.0671 0 Td
(for)Tj
1.389 0 Td
(low)Tj
1.6554 0 Td
(quality)Tj
2.9537 0 Td
(and)Tj
1.7291 0 Td
(adapter)Tj
-34.3273 -1.2983 Td
(sequences,)Tj
4.4446 0 Td
(were)Tj
2.1203 0 Td
(assembled)Tj
4.32 0 Td
(using)Tj
2.3924 0 Td
(SOAPdenovo)Tj
5.6523 0 Td
(\(v)Tj
1.0148 0 Td
(1.05\))Tj
2.211 0 Td
([)Tj
0.83 0.64 0.02 0 k
(29)Tj
0 g
(].)Tj
2.0749 0 Td
(The)Tj
1.7859 0 Td
(gene)Tj
2.0806 0 Td
(space)Tj
2.3754 0 Td
(coverage)Tj
3.7247 0 Td
(was)Tj
1.6951 0 Td
(esti-)Tj
-35.892 -1.3039 Td
(mated)Tj
2.7212 0 Td
(with)Tj
1.9956 0 Td
(Core)Tj
2.1883 0 Td
(Eukaryotic)Tj
4.5694 0 Td
(Genes)Tj
2.6929 0 Td
(Mapping)Tj
3.8608 0 Td
(Approach)Tj
4.2009 0 Td
(\(CEGMA)Tj
4.0875 0 Td
(v2.5\))Tj
2.1884 0 Td
([)Tj
0.83 0.64 0.02 0 k
(30)Tj
0 g
(])Tj
1.8538 0 Td
(using)Tj
2.3868 0 Td
(default)Tj
-32.7456 -1.2982 Td
(parameters)Tj
4.6714 0 Td
(and)Tj
1.7291 0 Td
(Benchmarking)Tj
6.1285 0 Td
(Universal)Tj
4.0649 0 Td
(Single-Copy)Tj
5.1363 0 Td
(Orthologues)Tj
5.1987 0 Td
(\(BUSCO)Tj
3.7644 0 Td
(v1\))Tj
1.491 0 Td
([)Tj
0.83 0.64 0.02 0 k
(31)Tj
0 g
(])Tj
1.8539 0 Td
(using)Tj
-34.0382 -1.304 Td
(fungal)Tj
2.7269 0 Td
(gene)Tj
2.0806 0 Td
(set)Tj
1.3039 0 Td
(and)Tj
/F7 1 Tf
1.7291 0 Td
[()25()-4()-3()16()-9()12()12()]TJ
4.0139 0 Td
[()-8()20()16()18()12( )6()7()16()-9()12()12()]TJ
/F8 1 Tf
5.8676 0 Td
(as)Tj
1.0148 0 Td
(a)Tj
0.652 0 Td
(species)Tj
2.999 0 Td
(parameter)Tj
4.3143 0 Td
(in)Tj
1.0318 0 Td
(long)Tj
1.99 0 Td
(mode.)Tj
ET
Q
q
1 j
1 J
0 w
11.9999 0 0 11.9999 200.0125 587.6787 cm
BT
/F0 1 Tf
1 TL
-0.0033 Tc
0 0 Td
(RNA-sequencing)Tj
7.6866 0 Td
(\(RNA-Seq\))Tj
5.0599 0 Td
(and)Tj
1.8662 0 Td
(transcriptome)Tj
6.2126 0 Td
(assembly)Tj
ET
Q
q
1 j
1 J
0 w
10 0 0 10 200.0125 570.7275 cm
BT
/F8 1 Tf
1 TL
-0.004 Tc
0 0 Td
(Non-strand-specific)Tj
8.226 0 Td
(RNA-Seq)Tj
4.0139 0 Td
(was)Tj
1.7007 0 Td
(carried)Tj
3.0388 0 Td
(out)Tj
1.5533 0 Td
(for)Tj
1.3833 0 Td
(three)Tj
/F7 1 Tf
2.2677 0 Td
[()12( )]TJ
1.0148 0 Td
[()-13()14(\r)7()20(\n)]TJ
/F8 1 Tf
2.0466 0 Td
(samples,)Tj
3.6057 0 Td
(including)Tj
4.0422 0 Td
(7)Tj
0.6973 0 Td
(day)Tj
1.6327 0 Td
(old)Tj
-35.223 -1.3039 Td
(cultures)Tj
3.3958 0 Td
(on)Tj
1.2756 0 Td
(potato)Tj
2.7836 0 Td
(dextrose)Tj
3.6 0 Td
(agar)Tj
1.9219 0 Td
(\(PDA\))Tj
2.88 0 Td
(supported)Tj
4.2689 0 Td
(by)Tj
1.1849 0 Td
(dialysis)Tj
3.1351 0 Td
(membrane)Tj
4.5694 0 Td
(for)Tj
1.389 0 Td
(easy)Tj
1.8878 0 Td
(collection)Tj
4.1159 0 Td
(of)Tj
-36.4079 -1.2982 Td
(fungal)Tj
2.7269 0 Td
(mass)Tj
2.1996 0 Td
(along)Tj
2.4208 0 Td
(with)Tj
1.9956 0 Td
(un-germinated)Tj
6.2248 0 Td
(conidia,)Tj
3.4186 0 Td
(3)Tj
0.6973 0 Td
(day)Tj
1.6384 0 Td
(old)Tj
1.4967 0 Td
(liquid)Tj
2.5625 0 Td
(cultures)Tj
3.4016 0 Td
(in)Tj
1.0374 0 Td
(Czapeck's)Tj
4.1669 0 Td
(medium)Tj
-33.9871 -1.2983 Td
(\(CZ\))Tj
2.1656 0 Td
(and)Tj
/F7 1 Tf
1.7291 0 Td
[()12( )]TJ
1.0148 0 Td
[()-13()14(\r)7()20(\n)]TJ
/F8 1 Tf
2.0466 0 Td
(appresorial)Tj
4.6658 0 Td
(assay)Tj
2.2677 0 Td
(\(APR\).)Tj
2.9877 0 Td
(Three)Tj
/F7 1 Tf
2.5795 0 Td
[()12( )]TJ
1.0148 0 Td
[()10()4()16( )22(\r)11()]TJ
/F8 1 Tf
2.7269 0 Td
(samples)Tj
3.3846 0 Td
(which)Tj
2.6475 0 Td
(included)Tj
3.7134 0 Td
(chilli)Tj
2.1997 0 Td
(fruits)Tj
-35.1437 -1.3039 Td
(inoculated)Tj
4.422 0 Td
(with)Tj
/F7 1 Tf
1.9955 0 Td
[()]TJ
/F8 1 Tf
(.)Tj
/F7 1 Tf
1.0715 0 Td
[(\r)7()-9()12( )6()7()22(\r)7()12()]TJ
/F8 1 Tf
4.3937 0 Td
(conidia)Tj
3.1975 0 Td
(and)Tj
1.7291 0 Td
(sampled)Tj
3.5489 0 Td
(at)Tj
0.9525 0 Td
(0,)Tj
0.9184 0 Td
(24)Tj
1.1735 0 Td
(and)Tj
1.7292 0 Td
(72)Tj
1.1735 0 Td
(hours)Tj
2.5115 0 Td
(post)Tj
1.9048 0 Td
(inoculation)Tj
4.7962 0 Td
(\(0)Tj
-35.5178 -1.2983 Td
(hpi)Tj
1.5306 0 Td
(as)Tj
1.0148 0 Td
(control,)Tj
3.3449 0 Td
(24)Tj
1.1735 0 Td
(hpi)Tj
1.5307 0 Td
(and)Tj
1.7348 0 Td
(72)Tj
1.1679 0 Td
(hpi,)Tj
1.7575 0 Td
(respectively\))Tj
5.227 0 Td
(were)Tj
2.1203 0 Td
(also)Tj
1.7688 0 Td
(used)Tj
2.058 0 Td
(for)Tj
1.3889 0 Td
(RNA-Seq.)Tj
4.2406 0 Td
(For)Tj
/F7 1 Tf
1.6271 0 Td
[()12( )]TJ
1.0148 0 Td
[()-13()14(\r)7()20(\n)]TJ
/F8 1 Tf
2.0466 0 Td
(appre-)Tj
-34.7468 -1.2982 Td
(sorial)Tj
2.4037 0 Td
(assay,)Tj
2.4888 0 Td
(conidial)Tj
3.4413 0 Td
(suspension)Tj
4.6431 0 Td
(was)Tj
1.7008 0 Td
(placed)Tj
2.7949 0 Td
(on)Tj
1.2699 0 Td
(polystyrene)Tj
4.8302 0 Td
(petri)Tj
2.0976 0 Td
(dishes)Tj
2.6873 0 Td
(\(Tarsons,)Tj
3.9798 0 Td
(India;)Tj
2.5625 0 Td
(140)Tj
1.6441 0 Td
(x)Tj
-36.544 -1.304 Td
(16)Tj
1.1678 0 Td
(mm\))Tj
2.1997 0 Td
(in)Tj
1.0375 0 Td
(the)Tj
1.4683 0 Td
(form)Tj
2.2053 0 Td
(of)Tj
1.0148 0 Td
(droplets)Tj
3.4753 0 Td
(covering)Tj
3.6793 0 Td
(the)Tj
1.4684 0 Td
(whole)Tj
2.6078 0 Td
(surface,)Tj
3.2769 0 Td
(incubated)Tj
4.1782 0 Td
(overnight)Tj
4.0819 0 Td
(in)Tj
1.0374 0 Td
(a)Tj
0.652 0 Td
(plastic)Tj
-33.5506 -1.2982 Td
(box)Tj
1.6951 0 Td
(lined)Tj
2.2336 0 Td
(with)Tj
2.0013 0 Td
(moist)Tj
2.4718 0 Td
(tissue)Tj
2.4604 0 Td
(paper)Tj
2.4832 0 Td
(to)Tj
1.0204 0 Td
(maintain)Tj
3.8381 0 Td
(the)Tj
1.474 0 Td
(humidity)Tj
3.9062 0 Td
(and)Tj
1.7291 0 Td
(observed)Tj
3.7984 0 Td
(under)Tj
2.6192 0 Td
(light)Tj
2.0239 0 Td
(micro-)Tj
-33.7547 -1.2983 Td
(scope)Tj
2.4491 0 Td
(for)Tj
1.3889 0 Td
(the)Tj
1.4684 0 Td
(formation)Tj
4.2633 0 Td
(of)Tj
1.0148 0 Td
(appresoria.)Tj
4.6487 0 Td
(For)Tj
1.6214 0 Td
(RNA)Tj
2.2621 0 Td
(extraction,)Tj
4.4844 0 Td
(the)Tj
1.4683 0 Td
(petri)Tj
2.0976 0 Td
(dishes)Tj
2.6873 0 Td
(were)Tj
2.1259 0 Td
(washed)Tj
3.1748 0 Td
(with)Tj
-35.155 -1.3039 Td
(RNase-free)Tj
4.6544 0 Td
(water,)Tj
2.6532 0 Td
(appresoria)Tj
4.422 0 Td
(were)Tj
2.126 0 Td
(scraped)Tj
3.2768 0 Td
(off)Tj
1.304 0 Td
(the)Tj
1.4683 0 Td
(surface)Tj
3.0501 0 Td
(using)Tj
2.3867 0 Td
(a)Tj
0.6577 0 Td
(cell)Tj
1.559 0 Td
(scraper)Tj
3.1181 0 Td
(\(Corning)Tj
3.9345 0 Td
(Inc.,)Tj
-34.6108 -1.2983 Td
(USA\))Tj
2.4547 0 Td
(adding)Tj
2.9877 0 Td
(Trizol)Tj
2.6362 0 Td
(reagent)Tj
3.1862 0 Td
(\(Invitrogen,)Tj
5.0116 0 Td
(USA\).)Tj
2.6815 0 Td
(For)Tj
1.6271 0 Td
(the)Tj
1.4684 0 Td
(rest)Tj
1.6724 0 Td
(of)Tj
1.0148 0 Td
(the)Tj
1.4683 0 Td
(samples)Tj
3.3846 0 Td
(too,)Tj
1.7574 0 Td
(Trizol)Tj
2.6362 0 Td
(method)Tj
-33.9871 -1.2982 Td
(was)Tj
1.6951 0 Td
(used)Tj
2.0636 0 Td
(for)Tj
1.3833 0 Td
(RNA)Tj
2.262 0 Td
(extraction)Tj
4.2576 0 Td
(followed)Tj
3.6453 0 Td
(by)Tj
1.1849 0 Td
(purification)Tj
4.9379 0 Td
(with)Tj
1.9956 0 Td
(RNeasy)Tj
3.2485 0 Td
(minispin)Tj
3.8154 0 Td
(columns)Tj
3.6567 0 Td
(\(Qiagen,)Tj
-34.1459 -1.2983 Td
(Hilden,)Tj
3.2258 0 Td
(Germany\))Tj
4.3256 0 Td
(according)Tj
4.1896 0 Td
(to)Tj
1.0261 0 Td
(the)Tj
1.4684 0 Td
(manufacturers')Tj
6.2645 0 Td
(instructions.)Tj
5.2214 0 Td
(The)Tj
1.7858 0 Td
(RNAs)Tj
2.6192 0 Td
(from)Tj
2.2053 0 Td
(all)Tj
1.1509 0 Td
(samples)Tj
-33.4826 -1.3039 Td
(were)Tj
2.1203 0 Td
(treated)Tj
2.999 0 Td
(with)Tj
1.9956 0 Td
(Turbo)Tj
2.7439 0 Td
(DNA-free)Tj
4.2349 0 Td
(DNase)Tj
2.9083 0 Td
(\(Ambion,)Tj
4.1216 0 Td
(Texas,)Tj
2.7382 0 Td
(USA\))Tj
2.4548 0 Td
(to)Tj
1.0262 0 Td
(remove)Tj
3.2201 0 Td
(any)Tj
1.6554 0 Td
(genomic)Tj
-32.2183 -1.2983 Td
(DNA)Tj
2.3754 0 Td
(contamination.)Tj
6.3495 0 Td
(RNA-seq)Tj
3.9005 0 Td
(libraries)Tj
3.4696 0 Td
(were)Tj
2.1203 0 Td
(prepared)Tj
3.8097 0 Td
(using)Tj
2.3868 0 Td
(the)Tj
1.4683 0 Td
(Illumina)Tj
3.651 0 Td
(TruSeq)Tj
3.1351 0 Td
(3)Tj
0.6973 0 Td
(kit)Tj
1.2813 0 Td
(and)Tj
-34.6448 -1.2982 Td
(were)Tj
2.1203 0 Td
(sequenced)Tj
4.388 0 Td
(on)Tj
1.2755 0 Td
(Illumina)Tj
3.651 0 Td
(HiSeq)Tj
2.6589 0 Td
(2500)Tj
2.1203 0 Td
(platform)Tj
3.702 0 Td
(\(2x100)Tj
2.9311 0 Td
(bp)Tj
1.2415 0 Td
(reads\))Tj
2.6759 0 Td
(at)Tj
0.9524 0 Td
(SciGenom)Tj
4.4051 0 Td
(Labs)Tj
2.0579 0 Td
(Pvt.)Tj
1.7575 0 Td
(Ltd.)Tj
-35.9374 -1.304 Td
(\(Cochin,)Tj
3.719 0 Td
(Kerala,)Tj
3.033 0 Td
(India\).)Tj
2.9027 0 Td
(The)Tj
1.7801 0 Td
(quality)Tj
2.9537 0 Td
(check)Tj
2.5172 0 Td
(of)Tj
1.0148 0 Td
(sequenced)Tj
4.3823 0 Td
(reads)Tj
2.3414 0 Td
(\()Tj
0.83 0.64 0.02 0 k
(S1)Tj
1.508 0 Td
(Table)Tj
0 g
(\))Tj
2.7836 0 Td
(was)Tj
1.7008 0 Td
(performed)Tj
4.4674 0 Td
(using)Tj
-35.104 -1.2982 Td
(the)Tj
1.4683 0 Td
(FastQC)Tj
3.2485 0 Td
(suite)Tj
2.0976 0 Td
(\()Tj
0.83 0.64 0.02 0 k
(http://www.bioinform)Tj
9.2295 0 Td
(atics.babraham.ac.uk/proje)Tj
10.783 0 Td
(cts/fastqc/)Tj
0 g
(\).)Tj
-25.6307 -1.2983 Td
(The)Tj
1.7858 0 Td
(raw)Tj
1.7064 0 Td
(reads)Tj
2.3414 0 Td
(were)Tj
2.1203 0 Td
(quality)Tj
2.9537 0 Td
(filtered)Tj
3.0671 0 Td
(using)Tj
2.3924 0 Td
(the)Tj
1.4683 0 Td
(program)Tj
3.7021 0 Td
(Trimmomatic)Tj
5.862 0 Td
(\(v0.36\))Tj
3.0047 0 Td
([)Tj
0.83 0.64 0.02 0 k
(32)Tj
0 g
(])Tj
1.8538 0 Td
(and)Tj
-33.4542 -1.3039 Td
(rRNA)Tj
2.6305 0 Td
(sequences)Tj
4.2179 0 Td
(were)Tj
2.126 0 Td
(removed)Tj
3.7474 0 Td
(through)Tj
3.4469 0 Td
(SortMeRNA)Tj
5.227 0 Td
(\(v2.1\))Tj
2.5342 0 Td
([)Tj
0.83 0.64 0.02 0 k
(33)Tj
0 g
(].)Tj
2.0749 0 Td
(PCR)Tj
2.0636 0 Td
(duplicates)Tj
4.2463 0 Td
(were)Tj
-32.3147 -1.2983 Td
(removed)Tj
3.7473 0 Td
(using)Tj
2.3868 0 Td
(PRINSEQ-lite)Tj
5.8563 0 Td
(\(v0.20.4\))Tj
3.7077 0 Td
([)Tj
0.83 0.64 0.02 0 k
(34)Tj
0 g
(])Tj
1.8539 0 Td
(and)Tj
1.7291 0 Td
(PE)Tj
1.3493 0 Td
(reads)Tj
2.3357 0 Td
(were)Tj
2.1203 0 Td
(assembled)Tj
4.3256 0 Td
(into)Tj
1.8426 0 Td
(longer)Tj
2.7779 0 Td
(super-)Tj
-34.0325 -1.2982 Td
(reads)Tj
2.3357 0 Td
(through)Tj
3.4469 0 Td
(MaSuRCA)Tj
4.5184 0 Td
(\(v)Tj
1.0148 0 Td
(3.13\))Tj
2.211 0 Td
([)Tj
0.83 0.64 0.02 0 k
(35)Tj
0 g
(].)Tj
2.0749 0 Td
(All)Tj
1.4003 0 Td
(the)Tj
/F7 1 Tf
1.4684 0 Td
[()12( )]TJ
1.0148 0 Td
[()-13()14(\r)7()20(\n)]TJ
/F8 1 Tf
2.0466 0 Td
(and)Tj
/F7 1 Tf
1.7291 0 Td
[()12( )]TJ
1.0148 0 Td
[()10()4()16( )22(\r)11()]TJ
/F8 1 Tf
2.7269 0 Td
(reads)Tj
2.3414 0 Td
(were)Tj
2.1203 0 Td
(aligned)Tj
3.1351 0 Td
(to)Tj
/F7 1 Tf
-34.5994 -1.304 Td
[()]TJ
/F8 1 Tf
(.)Tj
/F7 1 Tf
1.0658 0 Td
[(\r)7()-9()12( )6()7()22(\r)7()12()]TJ
/F8 1 Tf
4.3936 0 Td
(genome)Tj
3.4073 0 Td
(\(intron)Tj
3.101 0 Td
(sizes:)Tj
2.2734 0 Td
(105000)Tj
3.5887 0 Td
(bp\))Tj
1.5874 0 Td
(and)Tj
1.7291 0 Td
(the)Tj
1.4683 0 Td
(annotated)Tj
4.2406 0 Td
(genome)Tj
3.4072 0 Td
(of)Tj
1.0148 0 Td
(chilli)Tj
2.1997 0 Td
(\()Tj
/F7 1 Tf
[()]TJ
/F8 1 Tf
(.)Tj
/F7 1 Tf
-33.4769 -1.2982 Td
[()16( )18( )18()12()12()]TJ
/F8 1 Tf
3.5943 0 Td
(cv.)Tj
1.3209 0 Td
(Zunla-1\))Tj
3.7474 0 Td
([)Tj
0.83 0.64 0.02 0 k
(36)Tj
0 g
(])Tj
1.8481 0 Td
(\(intron)Tj
3.1011 0 Td
(sizes:)Tj
2.2734 0 Td
(5020,000\),)Tj
4.8586 0 Td
(respectively)Tj
4.8812 0 Td
(using)Tj
2.3924 0 Td
(HISAT2)Tj
3.5716 0 Td
([)Tj
0.83 0.64 0.02 0 k
(37)Tj
0 g
(].)Tj
2.0807 0 Td
(The)Tj
/F7 1 Tf
1.7801 0 Td
[()12( )]TJ
-35.4498 -1.2983 Td
[()10()4()16( )22(\r)11()]TJ
/F8 1 Tf
2.7269 0 Td
(reads)Tj
2.3414 0 Td
(which)Tj
2.6475 0 Td
(did)Tj
1.542 0 Td
(not)Tj
1.5761 0 Td
(map)Tj
1.9899 0 Td
(to)Tj
1.0261 0 Td
(chilli)Tj
2.194 0 Td
(genome)Tj
3.4073 0 Td
(were)Tj
2.1259 0 Td
(aligned)Tj
3.1295 0 Td
(to)Tj
/F7 1 Tf
1.0261 0 Td
[()]TJ
/F8 1 Tf
(.)Tj
/F7 1 Tf
1.0658 0 Td
[(\r)7()-9()12( )6()7()22(\r)7()12()]TJ
/F8 1 Tf
4.3994 0 Td
(genome)Tj
3.4072 0 Td
(assem-)Tj
-34.6051 -1.2983 Td
(bly.)Tj
1.6497 0 Td
(Both)Tj
2.1373 0 Td
(genome-guided)Tj
6.497 0 Td
(and)Tj
/F7 1 Tf
1.7291 0 Td
[()4()]TJ
1.1055 0 Td
[( )6(\n)12()3(\n)]TJ
/F8 1 Tf
2.1146 0 Td
(transcript)Tj
4.1103 0 Td
(assemblies)Tj
4.422 0 Td
(of)Tj
/F7 1 Tf
1.0148 0 Td
[()]TJ
/F8 1 Tf
(.)Tj
/F7 1 Tf
1.0715 0 Td
[(\r)7()-9()12( )6()7()22(\r)7()12()]TJ
/F8 1 Tf
4.3936 0 Td
(were)Tj
2.1203 0 Td
(obtained)Tj
-32.3657 -1.3039 Td
(using)Tj
2.3867 0 Td
(Trinity)Tj
3.0387 0 Td
(\(v2.2.0\))Tj
3.2315 0 Td
([)Tj
0.83 0.64 0.02 0 k
(38)Tj
0 g
(])Tj
1.8538 0 Td
(with)Tj
1.9956 0 Td
(jaccard-clip)Tj
4.8983 0 Td
(option)Tj
2.8629 0 Td
(to)Tj
1.0262 0 Td
(reduce)Tj
2.9196 0 Td
(the)Tj
1.4684 0 Td
(fusion)Tj
2.7156 0 Td
(genes.)Tj
2.6702 0 Td
(The)Tj
1.7801 0 Td
(non-redun-)Tj
-32.8476 -1.2982 Td
(dant)Tj
2.0295 0 Td
(transcripts)Tj
4.4674 0 Td
(were)Tj
2.126 0 Td
(retained)Tj
3.5149 0 Td
(using)Tj
2.3868 0 Td
(CD-HIT-EST)Tj
5.6976 0 Td
([)Tj
0.83 0.64 0.02 0 k
(39)Tj
0 g
(])Tj
1.8482 0 Td
(\(95%)Tj
2.2677 0 Td
(identity)Tj
3.3108 0 Td
(threshold\).)Tj
4.5751 0 Td
(Program)Tj
3.7474 0 Td
(to)Tj
-35.9714 -1.304 Td
(Assemble)Tj
4.0421 0 Td
(Spliced)Tj
3.1011 0 Td
(Alignments)Tj
4.8869 0 Td
(\(PASA\))Tj
3.2995 0 Td
([)Tj
0.83 0.64 0.02 0 k
(40)Tj
0 g
(])Tj
1.8539 0 Td
(was)Tj
1.6951 0 Td
(used)Tj
2.0636 0 Td
(to)Tj
1.0261 0 Td
(align)Tj
2.177 0 Td
(transcripts)Tj
4.4731 0 Td
(to)Tj
1.0261 0 Td
(genome)Tj
3.4072 0 Td
(and)Tj
1.7291 0 Td
(recon-)Tj
-34.7808 -1.2982 Td
(struct)Tj
2.5001 0 Td
(the)Tj
1.4683 0 Td
(refined)Tj
3.0671 0 Td
(transcriptome.)Tj
6.0888 0 Td
(A)Tj
0.9071 0 Td
(set)Tj
1.2982 0 Td
(of)Tj
1.0148 0 Td
(likely)Tj
2.3584 0 Td
(coding)Tj
2.9594 0 Td
(regions)Tj
3.1634 0 Td
(was)Tj
1.6951 0 Td
(extracted)Tj
3.8891 0 Td
(for)Tj
1.3833 0 Td
(training)Tj
/F7 1 Tf
3.4186 0 Td
[()22()]TJ
-35.2117 -1.304 Td
[()12( )18()14(\r)7()4(\n)]TJ
/F8 1 Tf
2.313 0 Td
(gene)Tj
2.0806 0 Td
(prediction)Tj
4.371 0 Td
(softwares)Tj
3.9458 0 Td
(through)Tj
3.4469 0 Td
(TransDecoder)Tj
5.9584 0 Td
(module)Tj
3.2712 0 Td
(bundled)Tj
3.5263 0 Td
(with)Tj
2.0012 0 Td
(PASA.)Tj
ET
Q
q
1 j
1 J
0 w
11.9999 0 0 11.9999 200.0125 139.011 cm
BT
/F0 1 Tf
1 TL
-0.0033 Tc
0 0 Td
(Gene)Tj
2.6409 0 Td
(prediction)Tj
ET
Q
q
1 j
1 J
0 w
10 0 0 10 200.0125 122.0031 cm
BT
/F8 1 Tf
1 TL
0.005 Tc
0 0 Td
(Genes)Tj
2.7382 0 Td
(were)Tj
2.1543 0 Td
(predicted)Tj
4.0819 0 Td
(through)Tj
3.5093 0 Td
(a)Tj
0.6633 0 Td
(combination)Tj
5.4424 0 Td
(of)Tj
1.0375 0 Td
(evidence-based)Tj
6.4403 0 Td
(\(transcriptome)Tj
6.3269 0 Td
(data)Tj
1.9502 0 Td
(and)Tj
-34.3443 -1.2982 Td
(homology)Tj
4.3256 0 Td
(to)Tj
1.0431 0 Td
(known)Tj
3.0501 0 Td
(proteins\))Tj
3.9345 0 Td
(and)Tj
/F7 1 Tf
1.7574 0 Td
[()22()]TJ
1.1962 0 Td
[()12( )18()14(\r)7()4(\n)]TJ
/F8 1 Tf
2.3698 0 Td
(methods)Tj
3.7474 0 Td
(through)Tj
3.5092 0 Td
(MAKER2)Tj
4.1896 0 Td
(\(v2.31.7\))Tj
3.7871 0 Td
([)Tj
0.83 0.64 0.02 0 k
(41)Tj
0 g
(].)Tj
-32.91 -1.3039 Td
(Repetitive)Tj
4.3029 0 Td
(elements)Tj
3.8381 0 Td
(in)Tj
1.0545 0 Td
(the)Tj
1.4967 0 Td
(genome)Tj
3.4582 0 Td
(assembly)Tj
3.9005 0 Td
(were)Tj
2.1599 0 Td
(masked)Tj
3.3336 0 Td
(using)Tj
2.4321 0 Td
(library)Tj
2.9367 0 Td
(of)Tj
1.0318 0 Td
(all)Tj
1.1735 0 Td
(fungal)Tj
-31.1185 -1.2983 Td
(repeat)Tj
2.7382 0 Td
(elements)Tj
3.8381 0 Td
(in)Tj
1.0545 0 Td
(the)Tj
1.4967 0 Td
(Repbase)Tj
3.5716 0 Td
(database)Tj
3.7077 0 Td
(\(v)Tj
1.0374 0 Td
(20140131\))Tj
4.4447 0 Td
(through)Tj
3.5036 0 Td
(RepeatMasker)Tj
6.0265 0 Td
(\(v4.0.5,)Tj
ET
Q
q
1 j
1 J
0 w
576 737.1 m
36 737.1 l
36 737.6 l
576 737.6 l
f*
36 741.2598 107.1496 23.6976 re
W* n
q
107.0929 0 0 23.6409 36 741.3165 cm
q
/I0 Do
Q
Q
Q
q
0 0 612 792 re
W* n
1 j
1 J
0 w
7.9999 0 0 7.9999 322.0157 745.7952 cm
BT
/F6 1 Tf
1 TL
-0.005 Tc
0 0 Td
(Colletotrich)Tj
4.9039 0 Td
(um)Tj
1.5945 0 Td
(truncatum)Tj
/F0 1 Tf
4.5993 0 Td
(genome)Tj
3.7701 0 Td
(sequencin)Tj
4.4717 0 Td
(g)Tj
0.7653 0 Td
(and)Tj
1.8567 0 Td
(comparati)Tj
4.3158 0 Td
(ve)Tj
1.2614 0 Td
(genomics)Tj
ET
Q
q
1 j
1 J
0 w
36 48.0002 m
576 48.0002 l
576 47.5002 l
36 47.5002 l
f*
0.83 0.64 0.02 0 k
81.5811 34.9228 m
237.8835 34.9228 l
h
f*
0 g
7.9999 0 0 7.9999 36 36 cm
BT
/F0 1 Tf
1 TL
-0.005 Tc
0 0 Td
(PLOS)Tj
2.8559 0 Td
(ONE)Tj
2.3669 0 Td
(|)Tj
0.83 0.64 0.02 0 k
0.4748 0 Td
(https://doi.or)Tj
5.4142 0 Td
(g/10.137)Tj
3.8198 0 Td
(1/journal.po)Tj
5.1236 0 Td
(ne.01835)Tj
4.089 0 Td
(67)Tj
0 g
2.0906 0 Td
(August)Tj
3.2882 0 Td
(28,)Tj
1.5874 0 Td
(2017)Tj
34.0302 0 Td
(4)Tj
0.7654 0 Td
(/)Tj
ET
endstream
endobj
130 0 obj
<>stream
endstream
endobj
131 0 obj
<>stream
endstream
endobj
132 0 obj
<>stream
endstream
endobj
133 0 obj
<>stream
endstream
endobj
134 0 obj
<>stream
endstream
endobj
135 0 obj
<>stream
endstream
endobj
136 0 obj
<>stream
endstream
endobj
137 0 obj
<>stream
endstream
endobj
138 0 obj
<>stream
endstream
endobj
139 0 obj
<>stream
endstream
endobj
140 0 obj
<>stream
endstream
endobj
141 0 obj
<>stream
endstream
endobj
142 0 obj
<>stream
endstream
endobj
143 0 obj
<>stream
endstream
endobj
144 0 obj
<>stream
endstream
endobj
145 0 obj
<>stream
BT
66.402 0 Td
(31)Tj
ET
Q
endstream
endobj
146 0 obj
<>/XObject<>>>/CropBox[0 0 612 792]/MediaBox[0 0 612 792]/Parent 12 0 R/Annots 147 0 R/Contents 148 0 R/TrimBox[0 0 612 792]>>
endobj
147 0 obj
[149 0 R 150 0 R 151 0 R 152 0 R 153 0 R 154 0 R 155 0 R 156 0 R 157 0 R 158 0 R 159 0 R 160 0 R 161 0 R 162 0 R 163 0 R 164 0 R 165 0 R 166 0 R 167 0 R 168 0 R 169 0 R 170 0 R 171 0 R 172 0 R 173 0 R 174 0 R 175 0 R 176 0 R 177 0 R 178 0 R 179 0 R 180 0 R 181 0 R 182 0 R 183 0 R 184 0 R]
endobj
149 0 obj
<>/Border[0 0 0]/A 185 0 R>>
endobj
185 0 obj
<>
endobj
150 0 obj
<>/Border[0 0 0]/A 186 0 R>>
endobj
186 0 obj
<>
endobj
151 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref042)>>
endobj
152 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref043)>>
endobj
153 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref044)>>
endobj
154 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref045)>>
endobj
155 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref019)>>
endobj
156 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref018)>>
endobj
157 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref020)>>
endobj
158 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref046)>>
endobj
159 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref047)>>
endobj
160 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref048)>>
endobj
161 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref049)>>
endobj
162 0 obj
<>/Border[0 0 0]/A 187 0 R>>
endobj
187 0 obj
<>
endobj
163 0 obj
<>/Border[0 0 0]/A 188 0 R>>
endobj
188 0 obj
<>
endobj
164 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref050)>>
endobj
165 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref051)>>
endobj
166 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.s001)>>
endobj
167 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.t001)>>
endobj
168 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref052)>>
endobj
169 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref053)>>
endobj
170 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref054)>>
endobj
171 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref055)>>
endobj
172 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref056)>>
endobj
173 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref057)>>
endobj
174 0 obj
<>/Border[0 0 0]/A 189 0 R>>
endobj
189 0 obj
<>
endobj
175 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref065)>>
endobj
176 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref066)>>
endobj
177 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref067)>>
endobj
178 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref068)>>
endobj
179 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref069)>>
endobj
180 0 obj
<>/Border[0 0 0]/A 190 0 R>>
endobj
190 0 obj
<>
endobj
181 0 obj
<>/Border[0 0 0]/A 191 0 R>>
endobj
191 0 obj
<>
endobj
182 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref070)>>
endobj
183 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref071)>>
endobj
184 0 obj
<>/Border[0 0 0]/A 192 0 R>>
endobj
192 0 obj
<>
endobj
148 0 obj
[193 0 R 194 0 R 195 0 R 196 0 R 197 0 R 198 0 R 199 0 R 200 0 R 201 0 R 202 0 R 203 0 R 204 0 R 205 0 R 206 0 R 207 0 R 208 0 R 209 0 R 210 0 R 211 0 R 212 0 R 213 0 R 214 0 R 215 0 R 216 0 R 217 0 R 218 0 R 219 0 R 220 0 R 221 0 R 222 0 R 223 0 R 224 0 R]
endobj
193 0 obj
<>stream
q
0.83 0.64 0.02 0 k
200.0126 706.337 m
323.263 706.337 l
h
f*
268.6677 693.2976 m
475.8236 693.2976 l
h
f*
314.7024 680.315 m
324.3969 680.315 l
h
f*
530.8724 680.315 m
540.5669 680.315 l
h
f*
427.011 667.3323 m
436.7055 667.3323 l
h
f*
524.1827 667.3323 m
533.8772 667.3323 l
h
f*
557.0646 641.3102 m
566.7591 641.3102 l
h
f*
264.1323 628.3276 m
273.8268 628.3276 l
h
f*
335.7921 628.3276 m
345.4866 628.3276 l
h
f*
438.5764 589.3228 m
448.2709 589.3228 l
h
f*
238.5638 563.3008 m
248.2583 563.3008 l
h
f*
317.8772 550.3181 m
327.5717 550.3181 l
h
f*
420.6047 493.852 m
430.1291 493.852 l
h
f*
431.6598 480.8693 m
573.8457 480.8693 l
h
f*
200.0126 467.8299 m
233.8016 467.8299 l
h
f*
445.3228 454.8472 m
454.8472 454.8472 l
h
f*
424.9701 411.3638 m
434.4945 411.3638 l
h
f*
434.8346 359.3764 m
459.1559 359.3764 l
h
f*
228.8126 346.3937 m
257.9528 346.3937 l
h
f*
362.5512 320.3717 m
372.0756 320.3717 l
h
f*
240.4913 307.389 m
250.0157 307.389 l
h
f*
231.0236 294.4063 m
240.548 294.4063 l
h
f*
528.2079 294.4063 m
537.7323 294.4063 l
h
f*
518.7402 281.3669 m
528.2646 281.3669 l
h
f*
279.8929 268.3843 m
289.4173 268.3843 l
h
f*
267.8173 242.3622 m
427.3512 242.3622 l
h
f*
523.1055 172.9134 m
532.6299 172.9134 l
h
f*
438.3496 159.9307 m
447.874 159.9307 l
h
f*
493.9087 159.9307 m
503.3764 159.9307 l
h
f*
261.0709 146.948 m
270.5953 146.948 l
h
f*
228.6992 133.9087 m
238.2236 133.9087 l
h
f*
291.1181 133.9087 m
517.7197 133.9087 l
h
f*
203.4142 120.926 m
392.485 120.926 l
h
f*
477.3543 94.9039 m
486.8787 94.9039 l
h
f*
413.0079 81.9213 m
422.4756 81.9213 l
h
f*
0 g
430.3559 80.9575 m
436.989 80.9575 l
436.989 80.5039 l
430.3559 80.5039 l
f*
487.7291 80.9575 m
494.589 80.9575 l
494.589 80.5039 l
487.7291 80.5039 l
f*
525.2031 80.9575 m
551.7921 80.9575 l
551.7921 80.5039 l
525.2031 80.5039 l
f*
0.83 0.64 0.02 0 k
1 j
1 J
0 w
10 0 0 10 200.0125 707.4141 cm
BT
/F8 1 Tf
1 TL
0.005 Tc
0 0 Td
(http://www.repeatmasker.org)Tj
11.9904 0 Td
(/)Tj
0 g
(\))Tj
0.9071 0 Td
(as)Tj
1.0318 0 Td
(well)Tj
1.8539 0 Td
(as)Tj
1.0318 0 Td
(the)Tj
/F7 1 Tf
1.4966 0 Td
[()4()]TJ
1.1282 0 Td
[( )6(\n)12()3(\n)]TJ
/F8 1 Tf
2.1487 0 Td
(repeat)Tj
2.7439 0 Td
(library)Tj
2.931 0 Td
(identified)Tj
4.1499 0 Td
(using)Tj
2.4378 0 Td
(Repeat-)Tj
-33.8511 -1.3039 Td
(Modeler)Tj
3.6736 0 Td
(\(v1.0.8,)Tj
0.83 0.64 0.02 0 k
3.1918 0 Td
(http://www.repeatmasker.org/Re)Tj
13.3908 0 Td
(peatModeler.html)Tj
0 g
(\).)Tj
8.1297 0 Td
(Genes)Tj
2.7326 0 Td
(were)Tj
2.16 0 Td
(predicted)Tj
-33.2785 -1.2982 Td
(using)Tj
2.4321 0 Td
(SNAP)Tj
2.7099 0 Td
(\(v2013-02-16\))Tj
5.981 0 Td
([)Tj
0.83 0.64 0.02 0 k
(42)Tj
0 g
(])Tj
1.8879 0 Td
(trained)Tj
3.1521 0 Td
(on)Tj
1.2926 0 Td
(CEGMA)Tj
3.7927 0 Td
(output,)Tj
3.1805 0 Td
(AUGUSTUS)Tj
5.4651 0 Td
(\(3.0.3\))Tj
2.8403 0 Td
([)Tj
0.83 0.64 0.02 0 k
(43)Tj
0 g
(])Tj
1.8879 0 Td
(trained)Tj
-34.6221 -1.2983 Td
(on)Tj
1.2925 0 Td
(BUSCO)Tj
3.464 0 Td
(output,)Tj
3.1861 0 Td
(auto-trained)Tj
5.3177 0 Td
(GeneMark-ES)Tj
6.0208 0 Td
(\(v4.21\))Tj
3.0671 0 Td
([)Tj
0.83 0.64 0.02 0 k
(44)Tj
0 g
(],)Tj
2.1203 0 Td
(and)Tj
1.7574 0 Td
(GeneId)Tj
3.2542 0 Td
(\(v1.4\))Tj
2.5852 0 Td
([)Tj
0.83 0.64 0.02 0 k
(45)Tj
0 g
(].)Tj
2.1203 0 Td
(The)Tj
-34.1856 -1.2983 Td
(training)Tj
3.4922 0 Td
(set)Tj
1.3266 0 Td
(of)Tj
1.0318 0 Td
(transcripts)Tj
4.5751 0 Td
(was)Tj
1.7235 0 Td
(supplied)Tj
3.6793 0 Td
(as)Tj
1.0318 0 Td
(organism-specific)Tj
7.4721 0 Td
(ESTs)Tj
2.2734 0 Td
(to)Tj
1.0431 0 Td
(MAKER2)Tj
4.1896 0 Td
(along)Tj
2.4661 0 Td
(with)Tj
/F7 1 Tf
2.0296 0 Td
[()]TJ
/F8 1 Tf
(.)Tj
/F7 1 Tf
-36.3342 -1.3039 Td
[()4()2( )22(\r)7()-4()]TJ
/F8 1 Tf
2.3243 0 Td
(ESTs)Tj
2.2734 0 Td
(from)Tj
2.2394 0 Td
(NCBI)Tj
2.5795 0 Td
(as)Tj
1.0318 0 Td
(alternate)Tj
3.7757 0 Td
(ESTs)Tj
2.2734 0 Td
(and)Tj
1.7575 0 Td
(the)Tj
1.4966 0 Td
(known)Tj
3.0501 0 Td
(proteins)Tj
3.5886 0 Td
(from)Tj
/F7 1 Tf
2.2394 0 Td
[()]TJ
/F8 1 Tf
(.)Tj
/F7 1 Tf
1.0828 0 Td
[()18()10()-17()-8()12( )10()4()16( )18()12()]TJ
/F8 1 Tf
5.6409 0 Td
([)Tj
0.83 0.64 0.02 0 k
(19)Tj
0 g
(],)Tj
/F7 1 Tf
-35.3534 -1.2982 Td
[()]TJ
/F8 1 Tf
(.)Tj
/F7 1 Tf
1.0828 0 Td
[()-8()20()16()18()12( )18()4()7(\n)10()4()]TJ
/F8 1 Tf
4.9776 0 Td
([)Tj
0.83 0.64 0.02 0 k
(18)Tj
0 g
(],)Tj
/F7 1 Tf
2.1203 0 Td
[()]TJ
/F8 1 Tf
(.)Tj
/F7 1 Tf
1.0885 0 Td
[()-8()-9()4()-4(\r)7()4()7(\n)10()4()]TJ
/F8 1 Tf
3.9571 0 Td
([)Tj
0.83 0.64 0.02 0 k
(20)Tj
0 g
(])Tj
1.8879 0 Td
(and)Tj
1.7575 0 Td
(SwissProt)Tj
4.1839 0 Td
(database.)Tj
3.9458 0 Td
(The)Tj
1.8141 0 Td
(process)Tj
3.2428 0 Td
(was)Tj
1.7292 0 Td
(reiterated)Tj
-31.7875 -1.2983 Td
(using)Tj
2.4321 0 Td
(SNAP)Tj
2.7099 0 Td
(and)Tj
1.7574 0 Td
(AUGUSTUS)Tj
5.4652 0 Td
(trained)Tj
3.1521 0 Td
(on)Tj
1.2926 0 Td
(the)Tj
1.4967 0 Td
(output)Tj
2.9537 0 Td
(of)Tj
1.0318 0 Td
(the)Tj
1.4966 0 Td
(previous)Tj
3.7191 0 Td
(run)Tj
1.6951 0 Td
(including)Tj
4.1215 0 Td
(the)Tj
1.4967 0 Td
(tran-)Tj
-34.8205 -1.3039 Td
(scriptome)Tj
4.2859 0 Td
(assembly)Tj
3.9005 0 Td
(from)Tj
2.245 0 Td
(PASA.)Tj
2.8913 0 Td
(The)Tj
1.8085 0 Td
(standard)Tj
3.7927 0 Td
(set)Tj
1.3323 0 Td
(of)Tj
1.0318 0 Td
(protein)Tj
3.2145 0 Td
(coding)Tj
3.016 0 Td
(genes)Tj
2.4832 0 Td
(was)Tj
1.7291 0 Td
(compiled)Tj
4.0251 0 Td
(fol-)Tj
-35.7559 -1.2983 Td
(lowing)Tj
2.9933 0 Td
(the)Tj
1.4967 0 Td
(recommendations)Tj
7.6308 0 Td
(of)Tj
1.0318 0 Td
(Campbell)Tj
4.1499 0 Td
(and)Tj
1.7575 0 Td
(coworkers)Tj
4.4447 0 Td
([)Tj
0.83 0.64 0.02 0 k
(46)Tj
0 g
(],)Tj
2.126 0 Td
(retaining)Tj
3.9231 0 Td
(high)Tj
2.0409 0 Td
(confidence)Tj
/F7 1 Tf
4.6942 0 Td
[()22()]TJ
-36.2889 -1.2983 Td
[()12( )18()14(\r)7()4(\n)]TJ
/F8 1 Tf
2.364 0 Td
(gene)Tj
2.1203 0 Td
(models.)Tj
3.3902 0 Td
(Some)Tj
2.4832 0 Td
(of)Tj
1.0318 0 Td
(the)Tj
1.4967 0 Td
(scaffolds)Tj
3.736 0 Td
(were)Tj
2.16 0 Td
(randomly)Tj
4.2009 0 Td
(inspected)Tj
4.0932 0 Td
(through)Tj
3.5036 0 Td
(Apollo)Tj
2.982 0 Td
(genome)Tj
-33.5619 -1.3039 Td
(browser)Tj
3.5092 0 Td
([)Tj
0.83 0.64 0.02 0 k
(47)Tj
0 g
(])Tj
1.8822 0 Td
(to)Tj
1.0432 0 Td
(check)Tj
2.5625 0 Td
(for)Tj
1.4116 0 Td
(any)Tj
1.6838 0 Td
(annotation)Tj
4.7055 0 Td
(biases.)Tj
2.8573 0 Td
(Transfer)Tj
3.702 0 Td
(RNAs)Tj
2.6589 0 Td
(\(tRNAs\))Tj
3.6623 0 Td
(were)Tj
2.16 0 Td
(predicted)Tj
-31.8385 -1.2982 Td
(using)Tj
2.4321 0 Td
(tRNAScan-SE)Tj
5.9357 0 Td
(\(v1.23\))Tj
3.0727 0 Td
([)Tj
0.83 0.64 0.02 0 k
(48)Tj
0 g
(].)Tj
ET
Q
q
1 j
1 J
0 w
11.9999 0 0 11.9999 200.0125 524.9196 cm
BT
/F0 1 Tf
1 TL
-0.0033 Tc
0 0 Td
(Differential)Tj
4.937 0 Td
(gene)Tj
2.4095 0 Td
(expression)Tj
4.9984 0 Td
(analysis)Tj
ET
Q
q
1 j
1 J
0 w
10 0 0 10 200.0125 507.9118 cm
BT
/F8 1 Tf
1 TL
-0.004 Tc
0 0 Td
(RNA-Seq)Tj
4.0195 0 Td
(reads)Tj
2.3357 0 Td
(from)Tj
/F7 1 Tf
2.2053 0 Td
[()12( )]TJ
1.0148 0 Td
[()-13()14(\r)7()20(\n)]TJ
/F8 1 Tf
2.0466 0 Td
(and)Tj
/F7 1 Tf
1.7291 0 Td
[()12( )]TJ
1.0148 0 Td
[()10()4()16( )22(\r)11()]TJ
/F8 1 Tf
2.7326 0 Td
(samples)Tj
3.3789 0 Td
(were)Tj
2.126 0 Td
(mapped)Tj
3.4582 0 Td
(onto)Tj
2.0806 0 Td
(the)Tj
1.4684 0 Td
(annotated)Tj
4.2406 0 Td
(genomes)Tj
-33.8511 -1.2982 Td
(of)Tj
/F7 1 Tf
1.0147 0 Td
[()]TJ
/F8 1 Tf
(.)Tj
/F7 1 Tf
1.0659 0 Td
[(\r)7()-9()12( )6()7()22(\r)7()12()]TJ
/F8 1 Tf
4.3936 0 Td
(and)Tj
1.7348 0 Td
(chilli,)Tj
2.4208 0 Td
(respectively,)Tj
5.108 0 Td
(using)Tj
2.3924 0 Td
(Tophat2)Tj
3.5887 0 Td
([)Tj
0.83 0.64 0.02 0 k
(49)Tj
0 g
(].)Tj
2.0806 0 Td
(The)Tj
1.7801 0 Td
(unmapped)Tj
4.5354 0 Td
(reads)Tj
2.3414 0 Td
(from)Tj
/F7 1 Tf
2.2054 0 Td
[()12( )]TJ
-34.6618 -1.2983 Td
[()10()4()16( )22(\r)11()]TJ
/F8 1 Tf
2.7269 0 Td
(samples)Tj
3.3845 0 Td
(were)Tj
2.1203 0 Td
(retrieved)Tj
3.7814 0 Td
(through)Tj
3.4469 0 Td
(bamUtils)Tj
3.8891 0 Td
(\(v)Tj
1.0148 0 Td
(1.0.13,)Tj
0.83 0.64 0.02 0 k
2.8006 0 Td
(http://genome.sph.umich.edu/wik)Tj
13.6176 0 Td
(i/)Tj
-36.7821 -1.3039 Td
(BamUtil)Tj
0 g
(\))Tj
3.9344 0 Td
(and)Tj
1.7235 0 Td
(mapped)Tj
3.4525 0 Td
(to)Tj
/F7 1 Tf
1.0205 0 Td
[()]TJ
/F8 1 Tf
(.)Tj
/F7 1 Tf
1.0602 0 Td
[(\r)7()-9()12( )6()7()22(\r)7()12()]TJ
/F8 1 Tf
4.3936 0 Td
(genome)Tj
3.4016 0 Td
(through)Tj
3.4356 0 Td
(Tophat2.)Tj
3.8097 0 Td
(The)Tj
1.7801 0 Td
(differential)Tj
4.5978 0 Td
(gene)Tj
2.075 0 Td
(expres-)Tj
-34.6845 -1.2983 Td
(sion)Tj
1.9048 0 Td
(between)Tj
3.5263 0 Td
(the)Tj
1.4683 0 Td
(samples)Tj
3.3846 0 Td
(was)Tj
1.6951 0 Td
(estimated)Tj
4.0762 0 Td
(by)Tj
1.1792 0 Td
(GFOLD)Tj
3.4866 0 Td
(\(V1.1.4\))Tj
3.4696 0 Td
([)Tj
0.83 0.64 0.02 0 k
(50)Tj
0 g
(].)Tj
ET
Q
q
1 j
1 J
0 w
11.9999 0 0 11.9999 200.0125 429.4488 cm
BT
/F0 1 Tf
1 TL
-0.0033 Tc
0 0 Td
(Genome)Tj
4.0205 0 Td
(synteny)Tj
3.6283 0 Td
(and)Tj
1.8662 0 Td
(phylogenetic)Tj
5.7591 0 Td
(analysis)Tj
ET
Q
q
1 j
1 J
0 w
10 0 0 10 200.0125 412.4409 cm
BT
/F8 1 Tf
1 TL
-0.004 Tc
0 0 Td
(Synteny)Tj
3.4242 0 Td
(Mapping)Tj
3.8607 0 Td
(and)Tj
1.7292 0 Td
(Analysis)Tj
3.5773 0 Td
(Program)Tj
3.7473 0 Td
(\(SyMAP\))Tj
3.9685 0 Td
(v4.2)Tj
1.8482 0 Td
([)Tj
0.83 0.64 0.02 0 k
(51)Tj
0 g
(])Tj
1.8538 0 Td
(was)Tj
1.7008 0 Td
(used)Tj
2.058 0 Td
(for)Tj
1.3833 0 Td
(synteny)Tj
3.3108 0 Td
(analysis)Tj
3.3279 0 Td
(of)Tj
/F7 1 Tf
-35.79 -1.2982 Td
[()]TJ
/F8 1 Tf
(.)Tj
/F7 1 Tf
1.0658 0 Td
[(\r)7()-9()12( )6()7()22(\r)7()12()]TJ
/F8 1 Tf
4.3936 0 Td
(genome)Tj
3.4073 0 Td
(with)Tj
2.0012 0 Td
(that)Tj
1.7745 0 Td
(of)Tj
/F7 1 Tf
1.0148 0 Td
[()]TJ
/F8 1 Tf
(.)Tj
/F7 1 Tf
1.0715 0 Td
[()18()10()-17()-8()12( )10()4()16( )18()12()]TJ
/F8 1 Tf
5.5275 0 Td
(with)Tj
2.0012 0 Td
(minimum)Tj
4.286 0 Td
(size)Tj
1.6838 0 Td
(of)Tj
1.0148 0 Td
(sequences)Tj
4.2236 0 Td
(set)Tj
1.2982 0 Td
(to)Tj
1.0262 0 Td
(10)Tj
-35.79 -1.2983 Td
(kb)Tj
1.2245 0 Td
(and)Tj
1.7291 0 Td
(masking)Tj
3.6113 0 Td
(sequences)Tj
4.218 0 Td
(other)Tj
2.347 0 Td
(than)Tj
2.0296 0 Td
(the)Tj
1.4684 0 Td
(protein)Tj
3.1521 0 Td
(coding)Tj
2.9593 0 Td
(genes.)Tj
2.6703 0 Td
(For)Tj
1.627 0 Td
(phylogenetic)Tj
5.3235 0 Td
(analysis)Tj
3.3221 0 Td
(and)Tj
-35.6822 -1.2982 Td
(comparative)Tj
5.1703 0 Td
(genomics,)Tj
4.2576 0 Td
(the)Tj
1.474 0 Td
(genomes)Tj
3.7644 0 Td
(and/or)Tj
2.9424 0 Td
(proteomes)Tj
4.4447 0 Td
(of)Tj
1.0148 0 Td
(10)Tj
/F7 1 Tf
1.1735 0 Td
[()-2(\n)10()4()4()8(\r)11(\n)12(\r)7()-9()4()13()18()12()]TJ
/F8 1 Tf
6.0434 0 Td
(species)Tj
2.999 0 Td
(and)Tj
1.7292 0 Td
(12)Tj
-35.0133 -1.304 Td
(other)Tj
2.347 0 Td
(related)Tj
2.9424 0 Td
(plant)Tj
2.2677 0 Td
(pathogenic)Tj
4.6317 0 Td
(fungi)Tj
2.3131 0 Td
(with)Tj
2.0013 0 Td
(diverse)Tj
3.05 0 Td
(lifestyles)Tj
3.5887 0 Td
(\()Tj
0.83 0.64 0.02 0 k
(S1)Tj
1.508 0 Td
(Fig)Tj
0 g
(\))Tj
1.8198 0 Td
(were)Tj
2.126 0 Td
(downloaded)Tj
5.1533 0 Td
(from)Tj
-33.749 -1.2982 Td
(NCBI)Tj
2.5398 0 Td
(\()Tj
0.83 0.64 0.02 0 k
(Table)Tj
2.7779 0 Td
(1)Tj
0 g
(\).)Tj
1.2643 0 Td
(A)Tj
0.9014 0 Td
(phylogenetic)Tj
5.3234 0 Td
(tree)Tj
1.7405 0 Td
(was)Tj
1.6951 0 Td
(constructed)Tj
4.9322 0 Td
(for)Tj
1.3833 0 Td
(all)Tj
1.1509 0 Td
(the)Tj
1.4683 0 Td
(fungi)Tj
2.3131 0 Td
(with)Tj
/F7 1 Tf
2.0012 0 Td
[()10()10()4()2()6()-8()4()4()12()-4()]TJ
4.439 0 Td
[( )18()4()12()4()4()16( )]TJ
/F8 1 Tf
-33.9304 -1.2983 Td
(as)Tj
1.0147 0 Td
(outgroup.)Tj
4.1669 0 Td
(Briefly,)Tj
3.0728 0 Td
(the)Tj
1.474 0 Td
(tightly)Tj
2.7779 0 Td
(clustered)Tj
3.8211 0 Td
(single)Tj
2.5285 0 Td
(copy)Tj
2.126 0 Td
(orthologues)Tj
4.9606 0 Td
(present)Tj
3.1634 0 Td
(in)Tj
1.0375 0 Td
(all)Tj
1.1452 0 Td
(the)Tj
1.4683 0 Td
(fungi)Tj
2.3187 0 Td
(were)Tj
-35.0756 -1.3039 Td
(identified)Tj
4.0591 0 Td
(through)Tj
3.4413 0 Td
(Proteinortho)Tj
5.4084 0 Td
(\(v5.13\))Tj
3.0048 0 Td
([)Tj
0.83 0.64 0.02 0 k
(52)Tj
0 g
(])Tj
1.8538 0 Td
(and)Tj
1.7291 0 Td
(were)Tj
2.126 0 Td
(aligned)Tj
3.1294 0 Td
(to)Tj
1.0262 0 Td
(each)Tj
2.0295 0 Td
(other)Tj
2.3471 0 Td
(using)Tj
2.3868 0 Td
(MUSCLE)Tj
-32.5415 -1.2983 Td
(\(v3.8.31\))Tj
3.7076 0 Td
([)Tj
0.83 0.64 0.02 0 k
(53)Tj
0 g
(].)Tj
2.075 0 Td
(The)Tj
1.7858 0 Td
(trimmed)Tj
3.7474 0 Td
(alignment)Tj
4.2689 0 Td
(in)Tj
1.0375 0 Td
(PHYLIP)Tj
3.6113 0 Td
(format)Tj
2.9424 0 Td
(was)Tj
1.6951 0 Td
(generated)Tj
4.1385 0 Td
(through)Tj
3.4469 0 Td
(trimAl)Tj
2.9027 0 Td
(\(v1.4.)Tj
-35.3591 -1.2982 Td
(rev15\))Tj
2.7609 0 Td
([)Tj
0.83 0.64 0.02 0 k
(54)Tj
0 g
(])Tj
1.8482 0 Td
(and)Tj
1.7347 0 Td
(concatenated)Tj
5.5106 0 Td
(to)Tj
1.0204 0 Td
(generate)Tj
3.6113 0 Td
(a)Tj
0.652 0 Td
(supermatrix)Tj
5.0797 0 Td
(using)Tj
2.3867 0 Td
(FASconCAT)Tj
5.3461 0 Td
(\(v1.0\))Tj
2.5285 0 Td
([)Tj
0.83 0.64 0.02 0 k
(55)Tj
0 g
(].)Tj
2.0806 0 Td
(A)Tj
0.9014 0 Td
(max-)Tj
-35.4611 -1.304 Td
(imum)Tj
2.6532 0 Td
(likelihood)Tj
4.2349 0 Td
(tree)Tj
1.7348 0 Td
(with)Tj
2.0012 0 Td
(1000)Tj
2.1203 0 Td
(bootstraps)Tj
4.3824 0 Td
(was)Tj
1.7007 0 Td
(inferred)Tj
3.4413 0 Td
(using)Tj
2.3867 0 Td
(RAxML)Tj
3.4243 0 Td
(\(v)Tj
1.0148 0 Td
(8.2.9\))Tj
2.4377 0 Td
([)Tj
0.83 0.64 0.02 0 k
(56)Tj
0 g
(])Tj
1.8482 0 Td
(based)Tj
2.4775 0 Td
(on)Tj
-35.858 -1.2982 Td
(the)Tj
1.4683 0 Td
(ProtTest)Tj
3.651 0 Td
(\(v3.0\))Tj
2.5285 0 Td
([)Tj
0.83 0.64 0.02 0 k
(57)Tj
0 g
(])Tj
1.8538 0 Td
(estimated)Tj
4.0705 0 Td
(models)Tj
3.1068 0 Td
(\(Gamma)Tj
3.7814 0 Td
(distribution)Tj
4.9719 0 Td
(of)Tj
1.0148 0 Td
(rate)Tj
1.7462 0 Td
(heterogeneity)Tj
5.6522 0 Td
(on)Tj
-33.8454 -1.2983 Td
(invariant)Tj
3.8437 0 Td
(sites)Tj
1.9276 0 Td
(with)Tj
2.0012 0 Td
(JTT)Tj
1.7688 0 Td
(model)Tj
2.7439 0 Td
(and)Tj
1.7291 0 Td
(empirical)Tj
3.9912 0 Td
(amino)Tj
2.7949 0 Td
(acid)Tj
1.8766 0 Td
(frequency\))Tj
4.524 0 Td
(and)Tj
1.7348 0 Td
(was)Tj
1.6951 0 Td
(visualized)Tj
-30.6309 -1.3039 Td
(through)Tj
3.4412 0 Td
(Figtree)Tj
2.999 0 Td
(\()Tj
0.83 0.64 0.02 0 k
(http://tree.bio.ed.ac.uk/s)Tj
10.0913 0 Td
(oftware/figtree/)Tj
0 g
(\).)Tj
ET
Q
q
1 j
1 J
0 w
11.9999 0 0 11.9999 200.0125 217.0204 cm
BT
/F0 1 Tf
1 TL
-0.0033 Tc
0 0 Td
(Functional)Tj
4.7764 0 Td
(annotation)Tj
ET
Q
q
1 j
1 J
0 w
10 0 0 10 200.0125 200.0125 cm
BT
/F8 1 Tf
1 TL
-0.004 Tc
0 0 Td
(Putative)Tj
3.4809 0 Td
(functions)Tj
3.9911 0 Td
(were)Tj
2.1203 0 Td
(assigned)Tj
3.6113 0 Td
(to)Tj
1.0205 0 Td
(the)Tj
1.474 0 Td
(predicted)Tj
3.9968 0 Td
(proteins)Tj
3.515 0 Td
(that)Tj
1.7801 0 Td
(had)Tj
1.7065 0 Td
(at)Tj
0.9524 0 Td
(least)Tj
1.9842 0 Td
(one)Tj
1.7008 0 Td
(homologue)Tj
-31.3339 -1.3039 Td
(identified)Tj
4.0591 0 Td
(through)Tj
3.4413 0 Td
(BLASTP)Tj
3.668 0 Td
(\(v2.2.26\))Tj
3.7077 0 Td
(against)Tj
3.033 0 Td
(the)Tj
1.4684 0 Td
(SwissProt)Tj
4.1045 0 Td
(database)Tj
3.6397 0 Td
(\(E-value)Tj
3.5659 0 Td
(threshold)Tj
4.0082 0 Td
(1e-05\))Tj
-34.6958 -1.2982 Td
(and/or)Tj
2.9366 0 Td
(a)Tj
0.652 0 Td
(known)Tj
3.0047 0 Td
(protein)Tj
3.1578 0 Td
(domain)Tj
3.3222 0 Td
(identified)Tj
4.0591 0 Td
(through)Tj
3.4413 0 Td
(InterProScan)Tj
5.5218 0 Td
(5)Tj
0.6974 0 Td
(\(v5.2059.0\))Tj
5.176 0 Td
([)Tj
0.83 0.64 0.02 0 k
(65)Tj
0 g
(].)Tj
2.0749 0 Td
(Secre-)Tj
-34.0438 -1.2983 Td
(tome)Tj
2.2677 0 Td
(was)Tj
1.7007 0 Td
(predicted)Tj
3.9969 0 Td
(using)Tj
2.3924 0 Td
(a)Tj
0.6519 0 Td
(battery)Tj
3.0047 0 Td
(of)Tj
1.0148 0 Td
(tools;)Tj
2.3698 0 Td
(Signal-P)Tj
3.566 0 Td
(\(v4.1\))Tj
2.5284 0 Td
([)Tj
0.83 0.64 0.02 0 k
(66)Tj
0 g
(],)Tj
2.075 0 Td
(Phobius)Tj
3.4809 0 Td
([)Tj
0.83 0.64 0.02 0 k
(67)Tj
0 g
(])Tj
1.8482 0 Td
(and)Tj
1.7291 0 Td
(WoLF)Tj
-32.6265 -1.2983 Td
(PSORT)Tj
3.2314 0 Td
(\(v0.2\))Tj
2.5342 0 Td
([)Tj
0.83 0.64 0.02 0 k
(68)Tj
0 g
(])Tj
1.8482 0 Td
(to)Tj
1.0261 0 Td
(identify)Tj
3.2938 0 Td
(signal)Tj
2.5455 0 Td
(peptides)Tj
3.5547 0 Td
(or)Tj
1.0998 0 Td
(extracellular)Tj
5.1307 0 Td
(localization,)Tj
5.0343 0 Td
(and)Tj
1.7291 0 Td
(TMHMM)Tj
-31.0278 -1.3039 Td
(\(v2.0\))Tj
2.5284 0 Td
([)Tj
0.83 0.64 0.02 0 k
(69)Tj
0 g
(],)Tj
2.0807 0 Td
(PS-SCAN)Tj
4.1612 0 Td
(\()Tj
0.83 0.64 0.02 0 k
(ftp://ftp.expasy.org/datab)Tj
10.4144 0 Td
(ases/prosite/ps_scan/ps_sca)Tj
11.0494 0 Td
(n.pl)Tj
0 g
(\))Tj
2.0976 0 Td
(and)Tj
1.7291 0 Td
(PredGPI)Tj
-34.0608 -1.2982 Td
(\()Tj
0.83 0.64 0.02 0 k
(http://gpcr.biocomp.unibo.it)Tj
11.792 0 Td
(/predgpi/pred.htm)Tj
0 g
(\))Tj
8.0163 0 Td
(to)Tj
1.0262 0 Td
(exclude)Tj
3.2598 0 Td
(sequences)Tj
4.2179 0 Td
(with)Tj
1.9956 0 Td
(transmembrane)Tj
-30.3078 -1.2983 Td
(domains,)Tj
3.9117 0 Td
(ER-retention)Tj
5.4425 0 Td
(signal)Tj
2.5455 0 Td
(and)Tj
1.7291 0 Td
(GPI)Tj
1.8369 0 Td
(anchors,)Tj
3.617 0 Td
(respectively.)Tj
5.108 0 Td
(The)Tj
1.7858 0 Td
(secretory)Tj
3.8494 0 Td
(proteins)Tj
3.5149 0 Td
(with)Tj
-33.3408 -1.3039 Td
(nuclear)Tj
3.1917 0 Td
(localization)Tj
4.8132 0 Td
(signal)Tj
2.5399 0 Td
(were)Tj
2.1259 0 Td
(identified)Tj
4.0592 0 Td
(using)Tj
2.3868 0 Td
(NLStradamus)Tj
5.7429 0 Td
(\(v1.8\))Tj
2.5342 0 Td
([)Tj
0.83 0.64 0.02 0 k
(70)Tj
0 g
(],)Tj
2.0749 0 Td
(while)Tj
2.3698 0 Td
(putative)Tj
3.4412 0 Td
(effec-)Tj
-35.2797 -1.2983 Td
(tor)Tj
1.3946 0 Td
(proteins)Tj
3.5149 0 Td
(were)Tj
2.1203 0 Td
(predicted)Tj
4.0025 0 Td
(through)Tj
3.4469 0 Td
(EffectorP)Tj
3.9458 0 Td
(\(v1.0\))Tj
2.5342 0 Td
([)Tj
0.83 0.64 0.02 0 k
(71)Tj
0 g
(].)Tj
2.0749 0 Td
(Carbohydrate)Tj
5.7373 0 Td
(Active)Tj
2.7723 0 Td
(enZymes)Tj
ET
Q
q
1 j
1 J
0 w
576 737.1 m
36 737.1 l
36 737.6 l
576 737.6 l
f*
36 741.2598 107.1496 23.6976 re
W* n
q
107.0929 0 0 23.6409 36 741.3165 cm
q
/I0 Do
Q
Q
Q
q
0 0 612 792 re
W* n
1 j
1 J
0 w
7.9999 0 0 7.9999 322.0157 745.7952 cm
BT
/F6 1 Tf
1 TL
-0.005 Tc
0 0 Td
(Colletotrich)Tj
4.9039 0 Td
(um)Tj
1.5945 0 Td
(truncatum)Tj
/F0 1 Tf
4.5993 0 Td
(genome)Tj
3.7701 0 Td
(sequencin)Tj
4.4717 0 Td
(g)Tj
0.7653 0 Td
(and)Tj
1.8567 0 Td
(comparati)Tj
4.3158 0 Td
(ve)Tj
1.2614 0 Td
(genomics)Tj
ET
Q
q
1 j
1 J
0 w
36 48.0002 m
576 48.0002 l
576 47.5002 l
36 47.5002 l
f*
0.83 0.64 0.02 0 k
81.5811 34.9228 m
237.8835 34.9228 l
h
f*
0 g
7.9999 0 0 7.9999 36 36 cm
BT
/F0 1 Tf
1 TL
-0.005 Tc
0 0 Td
(PLOS)Tj
2.8559 0 Td
(ONE)Tj
2.3669 0 Td
(|)Tj
0.83 0.64 0.02 0 k
0.4748 0 Td
(https://doi.or)Tj
5.4142 0 Td
(g/10.137)Tj
3.8198 0 Td
(1/journal.po)Tj
5.1236 0 Td
(ne.01835)Tj
4.089 0 Td
(67)Tj
0 g
2.0906 0 Td
(August)Tj
3.2882 0 Td
(28,)Tj
1.5874 0 Td
(2017)Tj
34.0302 0 Td
(5)Tj
0.7654 0 Td
(/)Tj
ET
endstream
endobj
194 0 obj
<>stream
endstream
endobj
195 0 obj
<>stream
endstream
endobj
196 0 obj
<>stream
endstream
endobj
197 0 obj
<>stream
endstream
endobj
198 0 obj
<>stream
endstream
endobj
199 0 obj
<>stream
endstream
endobj
200 0 obj
<>stream
endstream
endobj
201 0 obj
<>stream
endstream
endobj
202 0 obj
<>stream
endstream
endobj
203 0 obj
<>stream
endstream
endobj
204 0 obj
<>stream
endstream
endobj
205 0 obj
<>stream
endstream
endobj
206 0 obj
<>stream
endstream
endobj
207 0 obj
<>stream
endstream
endobj
208 0 obj
<>stream
endstream
endobj
209 0 obj
<>stream
endstream
endobj
210 0 obj
<>stream
endstream
endobj
211 0 obj
<>stream
endstream
endobj
212 0 obj
<>stream
endstream
endobj
213 0 obj
<>stream
endstream
endobj
214 0 obj
<>stream
endstream
endobj
215 0 obj
<>stream
endstream
endobj
216 0 obj
<>stream
endstream
endobj
217 0 obj
<>stream
endstream
endobj
218 0 obj
<>stream
endstream
endobj
219 0 obj
<>stream
endstream
endobj
220 0 obj
<>stream
endstream
endobj
221 0 obj
<>stream
endstream
endobj
222 0 obj
<>stream
endstream
endobj
223 0 obj
<>stream
endstream
endobj
224 0 obj
<>stream
BT
66.402 0 Td
(31)Tj
ET
Q
endstream
endobj
225 0 obj
<>/XObject<>>>/CropBox[0 0 612 792]/MediaBox[0 0 612 792]/Parent 12 0 R/Annots 228 0 R/Contents 229 0 R/TrimBox[0 0 612 792]>>
endobj
228 0 obj
[230 0 R 231 0 R 232 0 R 233 0 R 234 0 R 235 0 R 236 0 R 237 0 R 238 0 R 239 0 R 240 0 R 241 0 R 242 0 R 243 0 R 244 0 R 245 0 R 246 0 R 247 0 R 248 0 R 249 0 R 250 0 R 251 0 R 252 0 R 253 0 R 254 0 R 255 0 R 256 0 R 257 0 R 258 0 R 259 0 R 260 0 R 261 0 R 262 0 R 263 0 R 264 0 R 265 0 R 266 0 R 267 0 R 268 0 R 269 0 R 270 0 R 271 0 R 272 0 R 273 0 R]
endobj
230 0 obj
<>/Border[0 0 0]/A 274 0 R>>
endobj
274 0 obj
<>
endobj
231 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref072)>>
endobj
232 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref073)>>
endobj
233 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref074)>>
endobj
234 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref075)>>
endobj
235 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref076)>>
endobj
236 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref077)>>
endobj
237 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref078)>>
endobj
238 0 obj
<>/Border[0 0 0]/Dest(Lpone.0183567.t001)>>
endobj
239 0 obj
<>/Border[0 0 0]/A 275 0 R>>
endobj
275 0 obj
<>
endobj
240 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref018)>>
endobj
241 0 obj
<>/Border[0 0 0]/A 276 0 R>>
endobj
276 0 obj
<>
endobj
242 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref019)>>
endobj
243 0 obj
<>/Border[0 0 0]/A 277 0 R>>
endobj
277 0 obj
<>
endobj
244 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref020)>>
endobj
245 0 obj
<>/Border[0 0 0]/A 278 0 R>>
endobj
278 0 obj
<>
endobj
246 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref020)>>
endobj
247 0 obj
<>/Border[0 0 0]/A 279 0 R>>
endobj
279 0 obj
<>
endobj
248 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref022)>>
endobj
249 0 obj
<>/Border[0 0 0]/A 280 0 R>>
endobj
280 0 obj
<>
endobj
250 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref023)>>
endobj
251 0 obj
<>/Border[0 0 0]/A 281 0 R>>
endobj
281 0 obj
<>
endobj
252 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref026)>>
endobj
253 0 obj
<>/Border[0 0 0]/A 282 0 R>>
endobj
282 0 obj
<>
endobj
254 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref026)>>
endobj
255 0 obj
<>/Border[0 0 0]/A 283 0 R>>
endobj
283 0 obj
<>
endobj
256 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref026)>>
endobj
257 0 obj
<>/Border[0 0 0]/A 284 0 R>>
endobj
284 0 obj
<>
endobj
258 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref005)>>
endobj
259 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref024)>>
endobj
260 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref058)>>
endobj
261 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref058)>>
endobj
262 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref059)>>
endobj
263 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref059)>>
endobj
264 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref059)>>
endobj
265 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref060)>>
endobj
266 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref061)>>
endobj
267 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref061)>>
endobj
268 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref062)>>
endobj
269 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref063)>>
endobj
270 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref064)>>
endobj
271 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref064)>>
endobj
272 0 obj
<>/Border[0 0 0]/A 285 0 R>>
endobj
285 0 obj
<>
endobj
273 0 obj
<>/Border[0 0 0]/A 286 0 R>>
endobj
286 0 obj
<>
endobj
229 0 obj
[287 0 R 288 0 R 289 0 R 290 0 R 291 0 R 292 0 R 293 0 R 294 0 R 295 0 R 296 0 R 297 0 R 298 0 R 299 0 R 300 0 R 301 0 R 302 0 R 303 0 R 304 0 R 305 0 R 306 0 R 307 0 R 308 0 R 309 0 R 310 0 R 311 0 R 312 0 R]
endobj
287 0 obj
<>stream
q
0.83 0.64 0.02 0 k
396.3402 325.8142 m
498.5575 325.8142 l
h
f*
410.1732 312.8315 m
419.6976 312.8315 l
h
f*
222.8598 286.8094 m
232.3843 286.8094 l
h
f*
0 g
232.9512 272.863 m
237.7134 272.863 l
237.7134 272.3528 l
232.9512 272.3528 l
f*
276.8315 272.863 m
285.7323 272.863 l
285.7323 272.3528 l
276.8315 272.3528 l
f*
321.9591 272.863 m
329.3291 272.863 l
329.3291 272.3528 l
321.9591 272.3528 l
f*
354.274 272.863 m
360.5102 272.863 l
360.5102 272.3528 l
354.274 272.3528 l
f*
388.4031 272.863 m
393.6756 272.863 l
393.6756 272.3528 l
388.4031 272.3528 l
f*
0.83 0.64 0.02 0 k
462.2173 273.8268 m
471.7417 273.8268 l
h
f*
0 g
200.0126 246.8409 m
215.4898 246.8409 l
215.4898 246.3874 l
200.0126 246.3874 l
f*
261.2976 246.8409 m
266.0598 246.8409 l
266.0598 246.3874 l
261.2976 246.3874 l
f*
305.178 246.8409 m
314.0787 246.8409 l
314.0787 246.3874 l
305.178 246.3874 l
f*
350.3055 246.8409 m
357.1654 246.8409 l
357.1654 246.3874 l
350.3055 246.3874 l
f*
386.0787 246.8409 m
398.4945 246.8409 l
398.4945 246.3874 l
386.0787 246.3874 l
f*
0.83 0.64 0.02 0 k
203.4142 234.7654 m
212.9386 234.7654 l
h
f*
355.0677 195.7606 m
364.5354 195.7606 l
h
f*
547.7669 195.7606 m
557.2913 195.7606 l
h
f*
328.9323 182.778 m
338.4567 182.778 l
h
f*
0 g
1 j
1 J
0 w
10 0 0 10 200.0125 326.8913 cm
BT
/F8 1 Tf
1 TL
-0.004 Tc
0 0 Td
(\(CAZymes\))Tj
4.9039 0 Td
(were)Tj
2.1259 0 Td
(identified)Tj
4.0592 0 Td
(by)Tj
1.1792 0 Td
(HMMER)Tj
3.9628 0 Td
(\(v3.1b1,)Tj
0.83 0.64 0.02 0 k
3.4016 0 Td
(http://hmmer.janelia.org/)Tj
0 g
(\))Tj
10.7829 0 Td
(scan)Tj
1.9842 0 Td
(against)Tj
3.0274 0 Td
(the)Tj
-35.4271 -1.2982 Td
(family-specific)Tj
6.049 0 Td
(HMM)Tj
2.7723 0 Td
(profiles)Tj
3.2031 0 Td
(of)Tj
1.0148 0 Td
(dbCAN)Tj
3.3392 0 Td
(release)Tj
2.9027 0 Td
(2.0)Tj
1.3946 0 Td
([)Tj
0.83 0.64 0.02 0 k
(72)Tj
0 g
(].)Tj
2.075 0 Td
(Putative)Tj
3.4866 0 Td
(proteases)Tj
3.9174 0 Td
(and)Tj
1.7291 0 Td
(protease)Tj
-31.8838 -1.3039 Td
(inhibitors)Tj
4.1385 0 Td
(were)Tj
2.126 0 Td
(predicted)Tj
3.9968 0 Td
(through)Tj
3.4469 0 Td
(online)Tj
2.7609 0 Td
(batch)Tj
2.4095 0 Td
(BLAST)Tj
3.1124 0 Td
(of)Tj
1.0148 0 Td
(proteins)Tj
3.5093 0 Td
(against)Tj
3.033 0 Td
(the)Tj
1.4683 0 Td
(MEROPS)Tj
4.0819 0 Td
(data-)Tj
-35.0983 -1.2983 Td
(base)Tj
1.9445 0 Td
([)Tj
0.83 0.64 0.02 0 k
(73)Tj
0 g
(],)Tj
2.075 0 Td
(excluding)Tj
4.1158 0 Td
(the)Tj
1.4684 0 Td
(sequences)Tj
4.2179 0 Td
(with)Tj
2.0012 0 Td
(incomplete)Tj
4.6942 0 Td
(domains)Tj
3.685 0 Td
(and)Tj
1.7291 0 Td
(mutated)Tj
3.549 0 Td
(active)Tj
2.5228 0 Td
(sites)Tj
1.9275 0 Td
(or)Tj
1.0999 0 Td
(metal)Tj
-35.0303 -1.2983 Td
(ligands.)Tj
3.2938 0 Td
(Secondary)Tj
4.388 0 Td
(Metabolite)Tj
4.5127 0 Td
(Unique)Tj
3.2315 0 Td
(Regions)Tj
3.4129 0 Td
(Finder)Tj
2.8856 0 Td
(\(SMURF\))Tj
4.1556 0 Td
([)Tj
0.83 0.64 0.02 0 k
(74)Tj
0 g
(])Tj
1.8538 0 Td
(was)Tj
1.6952 0 Td
(used)Tj
2.0636 0 Td
(to)Tj
1.0261 0 Td
(identify)Tj
-32.5188 -1.3039 Td
(potential)Tj
3.7587 0 Td
(secondary)Tj
4.2689 0 Td
(metabolite)Tj
4.4447 0 Td
(\(SM\))Tj
2.2734 0 Td
(gene)Tj
2.0806 0 Td
(clusters.)Tj
3.4582 0 Td
(In)Tj
1.1056 0 Td
(addition)Tj
3.5999 0 Td
(to)Tj
1.0205 0 Td
(SMURF,)Tj
3.702 0 Td
(another)Tj
3.3279 0 Td
(online)Tj
2.7609 0 Td
(tool,)Tj
-35.8013 -1.2982 Td
(antibiotics)Tj
4.3993 0 Td
(and)Tj
1.7291 0 Td
(Secondary)Tj
4.388 0 Td
(Metabolite)Tj
4.5127 0 Td
(Analysis)Tj
3.5773 0 Td
(SHell)Tj
2.3811 0 Td
(\(antiSMASH)Tj
5.4028 0 Td
(fungal)Tj
2.7326 0 Td
(version)Tj
3.1521 0 Td
(4.0.0rc1\))Tj
-32.275 -1.304 Td
([)Tj
0.83 0.64 0.02 0 k
(75)Tj
0 g
(])Tj
1.8481 0 Td
(was)Tj
1.7008 0 Td
(also)Tj
1.7688 0 Td
(used)Tj
2.058 0 Td
(with)Tj
2.0012 0 Td
(default)Tj
2.965 0 Td
(parameters)Tj
4.6715 0 Td
(for)Tj
1.389 0 Td
(the)Tj
1.4683 0 Td
(prediction)Tj
4.371 0 Td
(of)Tj
1.0148 0 Td
(SM)Tj
1.5874 0 Td
(gene)Tj
2.0806 0 Td
(clusters)Tj
3.2315 0 Td
(in)Tj
/F7 1 Tf
1.0374 0 Td
[()]TJ
/F8 1 Tf
(.)Tj
/F7 1 Tf
1.0659 0 Td
[(\r)7()-9()12( )6()7()]TJ
-34.2593 -1.2982 Td
[(\r)7()12()]TJ
/F8 1 Tf
(.)Tj
2.0466 0 Td
(The)Tj
1.7858 0 Td
(putative)Tj
3.4412 0 Td
(pathogenicity)Tj
5.6523 0 Td
(genes,)Tj
2.6645 0 Td
(transporters)Tj
5.0853 0 Td
(and)Tj
1.7291 0 Td
(cytochrome)Tj
4.9777 0 Td
(P450)Tj
2.2053 0 Td
(genes)Tj
2.4378 0 Td
(were)Tj
2.1259 0 Td
(identi-)Tj
-34.1515 -1.2983 Td
(fied)Tj
1.7234 0 Td
(by)Tj
1.1849 0 Td
(retaining)Tj
3.8437 0 Td
(the)Tj
1.4684 0 Td
(best)Tj
1.8085 0 Td
(hits)Tj
1.6724 0 Td
(through)Tj
3.4469 0 Td
(BLASTP)Tj
3.668 0 Td
(\(E-value)Tj
3.566 0 Td
(threshold)Tj
4.0138 0 Td
(1e-10\))Tj
2.7609 0 Td
(against)Tj
3.0274 0 Td
(pathogen-)Tj
-32.1843 -1.3039 Td
(host)Tj
1.9105 0 Td
(interactions)Tj
4.9719 0 Td
(database)Tj
3.6397 0 Td
(\(PHI-base\))Tj
4.6431 0 Td
([)Tj
0.83 0.64 0.02 0 k
(76)Tj
0 g
(],)Tj
2.075 0 Td
(transporter)Tj
4.7224 0 Td
(classification)Tj
5.3462 0 Td
(database)Tj
3.6396 0 Td
(\(TCDB\))Tj
3.4866 0 Td
([)Tj
0.83 0.64 0.02 0 k
(77)Tj
0 g
(])Tj
-34.435 -1.2983 Td
(and)Tj
1.7291 0 Td
(cytochrome)Tj
4.9776 0 Td
(P450)Tj
2.2053 0 Td
(database)Tj
3.6397 0 Td
([)Tj
0.83 0.64 0.02 0 k
(78)Tj
0 g
(],)Tj
2.0749 0 Td
(respectively)Tj
4.8869 0 Td
(\(all)Tj
1.4854 0 Td
(accessed)Tj
3.5943 0 Td
(in)Tj
1.0375 0 Td
(October)Tj
3.4979 0 Td
(2016\).)Tj
2.6872 0 Td
(For)Tj
1.6271 0 Td
(compara-)Tj
-33.4429 -1.2982 Td
(tive)Tj
1.661 0 Td
(genomics,)Tj
4.2633 0 Td
(the)Tj
1.4684 0 Td
(same)Tj
2.2563 0 Td
(pipeline)Tj
3.4299 0 Td
(was)Tj
1.7008 0 Td
(run)Tj
1.6668 0 Td
(on)Tj
1.2755 0 Td
(the)Tj
1.474 0 Td
(predicted)Tj
3.9969 0 Td
(proteomes)Tj
4.4503 0 Td
(of)Tj
1.0148 0 Td
(other)Tj
/F7 1 Tf
2.3471 0 Td
[()-2(\n)10()4()4()8(\r)11(\n)12(\r)7()-9()4()13()18()12()]TJ
/F8 1 Tf
-31.0051 -1.304 Td
(species)Tj
2.9933 0 Td
(and)Tj
1.7348 0 Td
(related)Tj
2.9424 0 Td
(ascomycete)Tj
4.7905 0 Td
(fungi)Tj
2.313 0 Td
(downloaded)Tj
5.1534 0 Td
(from)Tj
2.2053 0 Td
(NCBI.)Tj
ET
Q
q
1 j
1 J
0 w
11.9999 0 0 11.9999 200.0125 131.0173 cm
BT
/F3 1 Tf
1 TL
-0.0033 Tc
0 0 Td
(Results)Tj
/F0 1 Tf
0 -1.5023 Td
(Fungal)Tj
3.2362 0 Td
(culture)Tj
3.1843 0 Td
(authentication)Tj
ET
Q
q
1 j
1 J
0 w
10 0 0 10 200.0125 95.9811 cm
BT
/F8 1 Tf
1 TL
-0.004 Tc
0 0 Td
(The)Tj
1.7801 0 Td
(six)Tj
/F7 1 Tf
1.3153 0 Td
[()]TJ
/F8 1 Tf
(.)Tj
/F7 1 Tf
1.0658 0 Td
[()7()12()7()10()4()1()]TJ
/F8 1 Tf
2.7893 0 Td
(\()Tj
/F7 1 Tf
[()]TJ
/F8 1 Tf
(.)Tj
/F7 1 Tf
1.4059 0 Td
[(\r)7()-9()12( )6()7()22(\r)7()12()]TJ
/F8 1 Tf
(\))Tj
4.7339 0 Td
(cultures)Tj
3.4015 0 Td
(procured)Tj
3.8891 0 Td
(from)Tj
2.2054 0 Td
(MTCC)Tj
3.05 0 Td
(were)Tj
2.126 0 Td
(authenticated)Tj
5.6522 0 Td
(by)Tj
-33.4145 -1.2982 Td
(sequencing)Tj
4.7168 0 Td
(internal)Tj
3.3562 0 Td
(transcribed)Tj
4.7508 0 Td
(spacer)Tj
2.7496 0 Td
(region)Tj
2.8063 0 Td
(of)Tj
1.0148 0 Td
(nuclear)Tj
3.1918 0 Td
(rRNA)Tj
2.6362 0 Td
(\(ITS\),)Tj
2.5511 0 Td
(a)Tj
0.652 0 Td
(universal)Tj
3.8551 0 Td
(DNA)Tj
ET
Q
q
0.45 0.36 0.35 0.01 k
1 j
1 J
0 w
36 711.8736 m
576 711.8736 l
576 711.3736 l
36 711.3736 l
f*
211.7098 711.3736 m
211.7098 698.8737 l
211.2097 698.8737 l
211.2097 711.3736 l
f*
211.2097 698.8737 m
36 698.8737 l
36 699.3737 l
211.2097 699.3737 l
f*
279.885 711.3736 m
279.885 698.8737 l
279.3849 698.8737 l
279.3849 711.3736 l
f*
279.3849 698.8737 m
211.7098 698.8737 l
211.7098 699.3737 l
279.3849 699.3737 l
f*
377.5507 711.3736 m
377.5507 698.8737 l
377.0507 698.8737 l
377.0507 711.3736 l
f*
377.0507 698.8737 m
279.885 698.8737 l
279.885 699.3737 l
377.0507 699.3737 l
f*
460.2759 711.3736 m
460.2759 698.8737 l
459.7758 698.8737 l
459.7758 711.3736 l
f*
459.7758 698.8737 m
377.5507 698.8737 l
377.5507 699.3737 l
459.7758 699.3737 l
f*
543.3086 711.3736 m
543.3086 698.8737 l
542.8086 698.8737 l
542.8086 711.3736 l
f*
542.8086 698.8737 m
460.2759 698.8737 l
460.2759 699.3737 l
542.8086 699.3737 l
f*
575.9989 698.8737 m
543.3086 698.8737 l
543.3086 699.3737 l
575.9989 699.3737 l
f*
211.7098 698.8737 m
211.7098 686.3737 l
211.2097 686.3737 l
211.2097 698.8737 l
f*
211.2097 686.3737 m
36 686.3737 l
36 686.8738 l
211.2097 686.8738 l
f*
279.885 698.8737 m
279.885 686.3737 l
279.3849 686.3737 l
279.3849 698.8737 l
f*
279.3849 686.3737 m
211.7098 686.3737 l
211.7098 686.8738 l
279.3849 686.8738 l
f*
377.5507 698.8737 m
377.5507 686.3737 l
377.0507 686.3737 l
377.0507 698.8737 l
f*
377.0507 686.3737 m
279.885 686.3737 l
279.885 686.8738 l
377.0507 686.8738 l
f*
460.2759 698.8737 m
460.2759 686.3737 l
459.7758 686.3737 l
459.7758 698.8737 l
f*
459.7758 686.3737 m
377.5507 686.3737 l
377.5507 686.8738 l
459.7758 686.8738 l
f*
543.3086 698.8737 m
543.3086 686.3737 l
542.8086 686.3737 l
542.8086 698.8737 l
f*
542.8086 686.3737 m
460.2759 686.3737 l
460.2759 686.8738 l
542.8086 686.8738 l
f*
575.9989 686.3737 m
543.3086 686.3737 l
543.3086 686.8738 l
575.9989 686.8738 l
f*
211.7098 686.3737 m
211.7098 673.8738 l
211.2097 673.8738 l
211.2097 686.3737 l
f*
211.2097 673.8738 m
36 673.8738 l
36 674.3738 l
211.2097 674.3738 l
f*
279.885 686.3737 m
279.885 673.8738 l
279.3849 673.8738 l
279.3849 686.3737 l
f*
279.3849 673.8738 m
211.7098 673.8738 l
211.7098 674.3738 l
279.3849 674.3738 l
f*
377.5507 686.3737 m
377.5507 673.8738 l
377.0507 673.8738 l
377.0507 686.3737 l
f*
377.0507 673.8738 m
279.885 673.8738 l
279.885 674.3738 l
377.0507 674.3738 l
f*
460.2759 686.3737 m
460.2759 673.8738 l
459.7758 673.8738 l
459.7758 686.3737 l
f*
459.7758 673.8738 m
377.5507 673.8738 l
377.5507 674.3738 l
459.7758 674.3738 l
f*
543.3086 686.3737 m
543.3086 673.8738 l
542.8086 673.8738 l
542.8086 686.3737 l
f*
542.8086 673.8738 m
460.2759 673.8738 l
460.2759 674.3738 l
542.8086 674.3738 l
f*
575.9989 673.8738 m
543.3086 673.8738 l
543.3086 674.3738 l
575.9989 674.3738 l
f*
211.7098 673.8738 m
211.7098 661.3739 l
211.2097 661.3739 l
211.2097 673.8738 l
f*
211.2097 661.3739 m
36 661.3739 l
36 661.8739 l
211.2097 661.8739 l
f*
279.885 673.8738 m
279.885 661.3739 l
279.3849 661.3739 l
279.3849 673.8738 l
f*
279.3849 661.3739 m
211.7098 661.3739 l
211.7098 661.8739 l
279.3849 661.8739 l
f*
377.5507 673.8738 m
377.5507 661.3739 l
377.0507 661.3739 l
377.0507 673.8738 l
f*
377.0507 661.3739 m
279.885 661.3739 l
279.885 661.8739 l
377.0507 661.8739 l
f*
460.2759 673.8738 m
460.2759 661.3739 l
459.7758 661.3739 l
459.7758 673.8738 l
f*
459.7758 661.3739 m
377.5507 661.3739 l
377.5507 661.8739 l
459.7758 661.8739 l
f*
543.3086 673.8738 m
543.3086 661.3739 l
542.8086 661.3739 l
542.8086 673.8738 l
f*
542.8086 661.3739 m
460.2759 661.3739 l
460.2759 661.8739 l
542.8086 661.8739 l
f*
575.9989 661.3739 m
543.3086 661.3739 l
543.3086 661.8739 l
575.9989 661.8739 l
f*
211.7098 661.3739 m
211.7098 648.8739 l
211.2097 648.8739 l
211.2097 661.3739 l
f*
211.2097 648.8739 m
36 648.8739 l
36 649.374 l
211.2097 649.374 l
f*
279.885 661.3739 m
279.885 648.8739 l
279.3849 648.8739 l
279.3849 661.3739 l
f*
279.3849 648.8739 m
211.7098 648.8739 l
211.7098 649.374 l
279.3849 649.374 l
f*
377.5507 661.3739 m
377.5507 648.8739 l
377.0507 648.8739 l
377.0507 661.3739 l
f*
377.0507 648.8739 m
279.885 648.8739 l
279.885 649.374 l
377.0507 649.374 l
f*
460.2759 661.3739 m
460.2759 648.8739 l
459.7758 648.8739 l
459.7758 661.3739 l
f*
459.7758 648.8739 m
377.5507 648.8739 l
377.5507 649.374 l
459.7758 649.374 l
f*
543.3086 661.3739 m
543.3086 648.8739 l
542.8086 648.8739 l
542.8086 661.3739 l
f*
542.8086 648.8739 m
460.2759 648.8739 l
460.2759 649.374 l
542.8086 649.374 l
f*
575.9989 648.8739 m
543.3086 648.8739 l
543.3086 649.374 l
575.9989 649.374 l
f*
211.7098 648.8739 m
211.7098 636.374 l
211.2097 636.374 l
211.2097 648.8739 l
f*
211.2097 636.374 m
36 636.374 l
36 636.874 l
211.2097 636.874 l
f*
279.885 648.8739 m
279.885 636.374 l
279.3849 636.374 l
279.3849 648.8739 l
f*
279.3849 636.374 m
211.7098 636.374 l
211.7098 636.874 l
279.3849 636.874 l
f*
377.5507 648.8739 m
377.5507 636.374 l
377.0507 636.374 l
377.0507 648.8739 l
f*
377.0507 636.374 m
279.885 636.374 l
279.885 636.874 l
377.0507 636.874 l
f*
460.2759 648.8739 m
460.2759 636.374 l
459.7758 636.374 l
459.7758 648.8739 l
f*
459.7758 636.374 m
377.5507 636.374 l
377.5507 636.874 l
459.7758 636.874 l
f*
543.3086 648.8739 m
543.3086 636.374 l
542.8086 636.374 l
542.8086 648.8739 l
f*
542.8086 636.374 m
460.2759 636.374 l
460.2759 636.874 l
542.8086 636.874 l
f*
575.9989 636.374 m
543.3086 636.374 l
543.3086 636.874 l
575.9989 636.874 l
f*
211.7098 636.374 m
211.7098 623.874 l
211.2097 623.874 l
211.2097 636.374 l
f*
211.2097 623.874 m
36 623.874 l
36 624.3741 l
211.2097 624.3741 l
f*
279.885 636.374 m
279.885 623.874 l
279.3849 623.874 l
279.3849 636.374 l
f*
279.3849 623.874 m
211.7098 623.874 l
211.7098 624.3741 l
279.3849 624.3741 l
f*
377.5507 636.374 m
377.5507 623.874 l
377.0507 623.874 l
377.0507 636.374 l
f*
377.0507 623.874 m
279.885 623.874 l
279.885 624.3741 l
377.0507 624.3741 l
f*
460.2759 636.374 m
460.2759 623.874 l
459.7758 623.874 l
459.7758 636.374 l
f*
459.7758 623.874 m
377.5507 623.874 l
377.5507 624.3741 l
459.7758 624.3741 l
f*
543.3086 636.374 m
543.3086 623.874 l
542.8086 623.874 l
542.8086 636.374 l
f*
542.8086 623.874 m
460.2759 623.874 l
460.2759 624.3741 l
542.8086 624.3741 l
f*
575.9989 623.874 m
543.3086 623.874 l
543.3086 624.3741 l
575.9989 624.3741 l
f*
211.7098 623.874 m
211.7098 611.3741 l
211.2097 611.3741 l
211.2097 623.874 l
f*
211.2097 611.3741 m
36 611.3741 l
36 611.8741 l
211.2097 611.8741 l
f*
279.885 623.874 m
279.885 611.3741 l
279.3849 611.3741 l
279.3849 623.874 l
f*
279.3849 611.3741 m
211.7098 611.3741 l
211.7098 611.8741 l
279.3849 611.8741 l
f*
377.5507 623.874 m
377.5507 611.3741 l
377.0507 611.3741 l
377.0507 623.874 l
f*
377.0507 611.3741 m
279.885 611.3741 l
279.885 611.8741 l
377.0507 611.8741 l
f*
460.2759 623.874 m
460.2759 611.3741 l
459.7758 611.3741 l
459.7758 623.874 l
f*
459.7758 611.3741 m
377.5507 611.3741 l
377.5507 611.8741 l
459.7758 611.8741 l
f*
543.3086 623.874 m
543.3086 611.3741 l
542.8086 611.3741 l
542.8086 623.874 l
f*
542.8086 611.3741 m
460.2759 611.3741 l
460.2759 611.8741 l
542.8086 611.8741 l
f*
575.9989 611.3741 m
543.3086 611.3741 l
543.3086 611.8741 l
575.9989 611.8741 l
f*
211.7098 611.3741 m
211.7098 598.8742 l
211.2097 598.8742 l
211.2097 611.3741 l
f*
211.2097 598.8742 m
36 598.8742 l
36 599.3742 l
211.2097 599.3742 l
f*
279.885 611.3741 m
279.885 598.8742 l
279.3849 598.8742 l
279.3849 611.3741 l
f*
279.3849 598.8742 m
211.7098 598.8742 l
211.7098 599.3742 l
279.3849 599.3742 l
f*
377.5507 611.3741 m
377.5507 598.8742 l
377.0507 598.8742 l
377.0507 611.3741 l
f*
377.0507 598.8742 m
279.885 598.8742 l
279.885 599.3742 l
377.0507 599.3742 l
f*
460.2759 611.3741 m
460.2759 598.8742 l
459.7758 598.8742 l
459.7758 611.3741 l
f*
459.7758 598.8742 m
377.5507 598.8742 l
377.5507 599.3742 l
459.7758 599.3742 l
f*
543.3086 611.3741 m
543.3086 598.8742 l
542.8086 598.8742 l
542.8086 611.3741 l
f*
542.8086 598.8742 m
460.2759 598.8742 l
460.2759 599.3742 l
542.8086 599.3742 l
f*
575.9989 598.8742 m
543.3086 598.8742 l
543.3086 599.3742 l
575.9989 599.3742 l
f*
211.7098 598.8742 m
211.7098 586.3742 l
211.2097 586.3742 l
211.2097 598.8742 l
f*
211.2097 586.3742 m
36 586.3742 l
36 586.8743 l
211.2097 586.8743 l
f*
279.885 598.8742 m
279.885 586.3742 l
279.3849 586.3742 l
279.3849 598.8742 l
f*
279.3849 586.3742 m
211.7098 586.3742 l
211.7098 586.8743 l
279.3849 586.8743 l
f*
377.5507 598.8742 m
377.5507 586.3742 l
377.0507 586.3742 l
377.0507 598.8742 l
f*
377.0507 586.3742 m
279.885 586.3742 l
279.885 586.8743 l
377.0507 586.8743 l
f*
460.2759 598.8742 m
460.2759 586.3742 l
459.7758 586.3742 l
459.7758 598.8742 l
f*
459.7758 586.3742 m
377.5507 586.3742 l
377.5507 586.8743 l
459.7758 586.8743 l
f*
543.3086 598.8742 m
543.3086 586.3742 l
542.8086 586.3742 l
542.8086 598.8742 l
f*
542.8086 586.3742 m
460.2759 586.3742 l
460.2759 586.8743 l
542.8086 586.8743 l
f*
575.9989 586.3742 m
543.3086 586.3742 l
543.3086 586.8743 l
575.9989 586.8743 l
f*
211.7098 586.3742 m
211.7098 573.8743 l
211.2097 573.8743 l
211.2097 586.3742 l
f*
211.2097 573.8743 m
36 573.8743 l
36 574.3743 l
211.2097 574.3743 l
f*
279.885 586.3742 m
279.885 573.8743 l
279.3849 573.8743 l
279.3849 586.3742 l
f*
279.3849 573.8743 m
211.7098 573.8743 l
211.7098 574.3743 l
279.3849 574.3743 l
f*
377.5507 586.3742 m
377.5507 573.8743 l
377.0507 573.8743 l
377.0507 586.3742 l
f*
377.0507 573.8743 m
279.885 573.8743 l
279.885 574.3743 l
377.0507 574.3743 l
f*
460.2759 586.3742 m
460.2759 573.8743 l
459.7758 573.8743 l
459.7758 586.3742 l
f*
459.7758 573.8743 m
377.5507 573.8743 l
377.5507 574.3743 l
459.7758 574.3743 l
f*
543.3086 586.3742 m
543.3086 573.8743 l
542.8086 573.8743 l
542.8086 586.3742 l
f*
542.8086 573.8743 m
460.2759 573.8743 l
460.2759 574.3743 l
542.8086 574.3743 l
f*
575.9989 573.8743 m
543.3086 573.8743 l
543.3086 574.3743 l
575.9989 574.3743 l
f*
211.7098 573.8743 m
211.7098 561.3744 l
211.2097 561.3744 l
211.2097 573.8743 l
f*
211.2097 561.3744 m
36 561.3744 l
36 561.8744 l
211.2097 561.8744 l
f*
279.885 573.8743 m
279.885 561.3744 l
279.3849 561.3744 l
279.3849 573.8743 l
f*
279.3849 561.3744 m
211.7098 561.3744 l
211.7098 561.8744 l
279.3849 561.8744 l
f*
377.5507 573.8743 m
377.5507 561.3744 l
377.0507 561.3744 l
377.0507 573.8743 l
f*
377.0507 561.3744 m
279.885 561.3744 l
279.885 561.8744 l
377.0507 561.8744 l
f*
460.2759 573.8743 m
460.2759 561.3744 l
459.7758 561.3744 l
459.7758 573.8743 l
f*
459.7758 561.3744 m
377.5507 561.3744 l
377.5507 561.8744 l
459.7758 561.8744 l
f*
543.3086 573.8743 m
543.3086 561.3744 l
542.8086 561.3744 l
542.8086 573.8743 l
f*
542.8086 561.3744 m
460.2759 561.3744 l
460.2759 561.8744 l
542.8086 561.8744 l
f*
575.9989 561.3744 m
543.3086 561.3744 l
543.3086 561.8744 l
575.9989 561.8744 l
f*
211.7098 561.3744 m
211.7098 548.8744 l
211.2097 548.8744 l
211.2097 561.3744 l
f*
211.2097 548.8744 m
36 548.8744 l
36 549.3745 l
211.2097 549.3745 l
f*
279.885 561.3744 m
279.885 548.8744 l
279.3849 548.8744 l
279.3849 561.3744 l
f*
279.3849 548.8744 m
211.7098 548.8744 l
211.7098 549.3745 l
279.3849 549.3745 l
f*
377.5507 561.3744 m
377.5507 548.8744 l
377.0507 548.8744 l
377.0507 561.3744 l
f*
377.0507 548.8744 m
279.885 548.8744 l
279.885 549.3745 l
377.0507 549.3745 l
f*
460.2759 561.3744 m
460.2759 548.8744 l
459.7758 548.8744 l
459.7758 561.3744 l
f*
459.7758 548.8744 m
377.5507 548.8744 l
377.5507 549.3745 l
459.7758 549.3745 l
f*
543.3086 561.3744 m
543.3086 548.8744 l
542.8086 548.8744 l
542.8086 561.3744 l
f*
542.8086 548.8744 m
460.2759 548.8744 l
460.2759 549.3745 l
542.8086 549.3745 l
f*
575.9989 548.8744 m
543.3086 548.8744 l
543.3086 549.3745 l
575.9989 549.3745 l
f*
211.7098 548.8744 m
211.7098 536.3745 l
211.2097 536.3745 l
211.2097 548.8744 l
f*
211.2097 536.3745 m
36 536.3745 l
36 536.8745 l
211.2097 536.8745 l
f*
279.885 548.8744 m
279.885 536.3745 l
279.3849 536.3745 l
279.3849 548.8744 l
f*
279.3849 536.3745 m
211.7098 536.3745 l
211.7098 536.8745 l
279.3849 536.8745 l
f*
377.5507 548.8744 m
377.5507 536.3745 l
377.0507 536.3745 l
377.0507 548.8744 l
f*
377.0507 536.3745 m
279.885 536.3745 l
279.885 536.8745 l
377.0507 536.8745 l
f*
460.2759 548.8744 m
460.2759 536.3745 l
459.7758 536.3745 l
459.7758 548.8744 l
f*
459.7758 536.3745 m
377.5507 536.3745 l
377.5507 536.8745 l
459.7758 536.8745 l
f*
543.3086 548.8744 m
543.3086 536.3745 l
542.8086 536.3745 l
542.8086 548.8744 l
f*
542.8086 536.3745 m
460.2759 536.3745 l
460.2759 536.8745 l
542.8086 536.8745 l
f*
575.9989 536.3745 m
543.3086 536.3745 l
543.3086 536.8745 l
575.9989 536.8745 l
f*
211.7098 536.3745 m
211.7098 523.8746 l
211.2097 523.8746 l
211.2097 536.3745 l
f*
211.2097 523.8746 m
36 523.8746 l
36 524.3746 l
211.2097 524.3746 l
f*
279.885 536.3745 m
279.885 523.8746 l
279.3849 523.8746 l
279.3849 536.3745 l
f*
279.3849 523.8746 m
211.7098 523.8746 l
211.7098 524.3746 l
279.3849 524.3746 l
f*
377.5507 536.3745 m
377.5507 523.8746 l
377.0507 523.8746 l
377.0507 536.3745 l
f*
377.0507 523.8746 m
279.885 523.8746 l
279.885 524.3746 l
377.0507 524.3746 l
f*
460.2759 536.3745 m
460.2759 523.8746 l
459.7758 523.8746 l
459.7758 536.3745 l
f*
459.7758 523.8746 m
377.5507 523.8746 l
377.5507 524.3746 l
459.7758 524.3746 l
f*
543.3086 536.3745 m
543.3086 523.8746 l
542.8086 523.8746 l
542.8086 536.3745 l
f*
542.8086 523.8746 m
460.2759 523.8746 l
460.2759 524.3746 l
542.8086 524.3746 l
f*
575.9989 523.8746 m
543.3086 523.8746 l
543.3086 524.3746 l
575.9989 524.3746 l
f*
211.7098 523.8746 m
211.7098 511.3746 l
211.2097 511.3746 l
211.2097 523.8746 l
f*
211.2097 511.3746 m
36 511.3746 l
36 511.8746 l
211.2097 511.8746 l
f*
279.885 523.8746 m
279.885 511.3746 l
279.3849 511.3746 l
279.3849 523.8746 l
f*
279.3849 511.3746 m
211.7098 511.3746 l
211.7098 511.8746 l
279.3849 511.8746 l
f*
377.5507 523.8746 m
377.5507 511.3746 l
377.0507 511.3746 l
377.0507 523.8746 l
f*
377.0507 511.3746 m
279.885 511.3746 l
279.885 511.8746 l
377.0507 511.8746 l
f*
460.2759 523.8746 m
460.2759 511.3746 l
459.7758 511.3746 l
459.7758 523.8746 l
f*
459.7758 511.3746 m
377.5507 511.3746 l
377.5507 511.8746 l
459.7758 511.8746 l
f*
543.3086 523.8746 m
543.3086 511.3746 l
542.8086 511.3746 l
542.8086 523.8746 l
f*
542.8086 511.3746 m
460.2759 511.3746 l
460.2759 511.8746 l
542.8086 511.8746 l
f*
575.9989 511.3746 m
543.3086 511.3746 l
543.3086 511.8746 l
575.9989 511.8746 l
f*
211.7098 511.3746 m
211.7098 498.8747 l
211.2097 498.8747 l
211.2097 511.3746 l
f*
211.2097 498.8747 m
36 498.8747 l
36 499.3747 l
211.2097 499.3747 l
f*
279.885 511.3746 m
279.885 498.8747 l
279.3849 498.8747 l
279.3849 511.3746 l
f*
279.3849 498.8747 m
211.7098 498.8747 l
211.7098 499.3747 l
279.3849 499.3747 l
f*
377.5507 511.3746 m
377.5507 498.8747 l
377.0507 498.8747 l
377.0507 511.3746 l
f*
377.0507 498.8747 m
279.885 498.8747 l
279.885 499.3747 l
377.0507 499.3747 l
f*
460.2759 511.3746 m
460.2759 498.8747 l
459.7758 498.8747 l
459.7758 511.3746 l
f*
459.7758 498.8747 m
377.5507 498.8747 l
377.5507 499.3747 l
459.7758 499.3747 l
f*
543.3086 511.3746 m
543.3086 498.8747 l
542.8086 498.8747 l
542.8086 511.3746 l
f*
542.8086 498.8747 m
460.2759 498.8747 l
460.2759 499.3747 l
542.8086 499.3747 l
f*
575.9989 498.8747 m
543.3086 498.8747 l
543.3086 499.3747 l
575.9989 499.3747 l
f*
211.7098 498.8747 m
211.7098 486.3747 l
211.2097 486.3747 l
211.2097 498.8747 l
f*
211.2097 486.3747 m
36 486.3747 l
36 486.8748 l
211.2097 486.8748 l
f*
279.885 498.8747 m
279.885 486.3747 l
279.3849 486.3747 l
279.3849 498.8747 l
f*
279.3849 486.3747 m
211.7098 486.3747 l
211.7098 486.8748 l
279.3849 486.8748 l
f*
377.5507 498.8747 m
377.5507 486.3747 l
377.0507 486.3747 l
377.0507 498.8747 l
f*
377.0507 486.3747 m
279.885 486.3747 l
279.885 486.8748 l
377.0507 486.8748 l
f*
460.2759 498.8747 m
460.2759 486.3747 l
459.7758 486.3747 l
459.7758 498.8747 l
f*
459.7758 486.3747 m
377.5507 486.3747 l
377.5507 486.8748 l
459.7758 486.8748 l
f*
543.3086 498.8747 m
543.3086 486.3747 l
542.8086 486.3747 l
542.8086 498.8747 l
f*
542.8086 486.3747 m
460.2759 486.3747 l
460.2759 486.8748 l
542.8086 486.8748 l
f*
575.9989 486.3747 m
543.3086 486.3747 l
543.3086 486.8748 l
575.9989 486.8748 l
f*
211.7098 486.3747 m
211.7098 473.8748 l
211.2097 473.8748 l
211.2097 486.3747 l
f*
211.2097 473.8748 m
36 473.8748 l
36 474.3748 l
211.2097 474.3748 l
f*
279.885 486.3747 m
279.885 473.8748 l
279.3849 473.8748 l
279.3849 486.3747 l
f*
279.3849 473.8748 m
211.7098 473.8748 l
211.7098 474.3748 l
279.3849 474.3748 l
f*
377.5507 486.3747 m
377.5507 473.8748 l
377.0507 473.8748 l
377.0507 486.3747 l
f*
377.0507 473.8748 m
279.885 473.8748 l
279.885 474.3748 l
377.0507 474.3748 l
f*
460.2759 486.3747 m
460.2759 473.8748 l
459.7758 473.8748 l
459.7758 486.3747 l
f*
459.7758 473.8748 m
377.5507 473.8748 l
377.5507 474.3748 l
459.7758 474.3748 l
f*
543.3086 486.3747 m
543.3086 473.8748 l
542.8086 473.8748 l
542.8086 486.3747 l
f*
542.8086 473.8748 m
460.2759 473.8748 l
460.2759 474.3748 l
542.8086 474.3748 l
f*
575.9989 473.8748 m
543.3086 473.8748 l
543.3086 474.3748 l
575.9989 474.3748 l
f*
211.7098 473.8748 m
211.7098 461.3749 l
211.2097 461.3749 l
211.2097 473.8748 l
f*
211.2097 461.3749 m
36 461.3749 l
36 461.8749 l
211.2097 461.8749 l
f*
279.885 473.8748 m
279.885 461.3749 l
279.3849 461.3749 l
279.3849 473.8748 l
f*
279.3849 461.3749 m
211.7098 461.3749 l
211.7098 461.8749 l
279.3849 461.8749 l
f*
377.5507 473.8748 m
377.5507 461.3749 l
377.0507 461.3749 l
377.0507 473.8748 l
f*
377.0507 461.3749 m
279.885 461.3749 l
279.885 461.8749 l
377.0507 461.8749 l
f*
460.2759 473.8748 m
460.2759 461.3749 l
459.7758 461.3749 l
459.7758 473.8748 l
f*
459.7758 461.3749 m
377.5507 461.3749 l
377.5507 461.8749 l
459.7758 461.8749 l
f*
543.3086 473.8748 m
543.3086 461.3749 l
542.8086 461.3749 l
542.8086 473.8748 l
f*
542.8086 461.3749 m
460.2759 461.3749 l
460.2759 461.8749 l
542.8086 461.8749 l
f*
575.9989 461.3749 m
543.3086 461.3749 l
543.3086 461.8749 l
575.9989 461.8749 l
f*
211.7098 461.3749 m
211.7098 448.8749 l
211.2097 448.8749 l
211.2097 461.3749 l
f*
211.2097 448.8749 m
36 448.8749 l
36 449.375 l
211.2097 449.375 l
f*
279.885 461.3749 m
279.885 448.8749 l
279.3849 448.8749 l
279.3849 461.3749 l
f*
279.3849 448.8749 m
211.7098 448.8749 l
211.7098 449.375 l
279.3849 449.375 l
f*
377.5507 461.3749 m
377.5507 448.8749 l
377.0507 448.8749 l
377.0507 461.3749 l
f*
377.0507 448.8749 m
279.885 448.8749 l
279.885 449.375 l
377.0507 449.375 l
f*
460.2759 461.3749 m
460.2759 448.8749 l
459.7758 448.8749 l
459.7758 461.3749 l
f*
459.7758 448.8749 m
377.5507 448.8749 l
377.5507 449.375 l
459.7758 449.375 l
f*
543.3086 461.3749 m
543.3086 448.8749 l
542.8086 448.8749 l
542.8086 461.3749 l
f*
542.8086 448.8749 m
460.2759 448.8749 l
460.2759 449.375 l
542.8086 449.375 l
f*
575.9989 448.8749 m
543.3086 448.8749 l
543.3086 449.375 l
575.9989 449.375 l
f*
211.7098 448.8749 m
211.7098 436.375 l
211.2097 436.375 l
211.2097 448.8749 l
f*
211.2097 436.375 m
36 436.375 l
36 436.875 l
211.2097 436.875 l
f*
279.885 448.8749 m
279.885 436.375 l
279.3849 436.375 l
279.3849 448.8749 l
f*
279.3849 436.375 m
211.7098 436.375 l
211.7098 436.875 l
279.3849 436.875 l
f*
377.5507 448.8749 m
377.5507 436.375 l
377.0507 436.375 l
377.0507 448.8749 l
f*
377.0507 436.375 m
279.885 436.375 l
279.885 436.875 l
377.0507 436.875 l
f*
460.2759 448.8749 m
460.2759 436.375 l
459.7758 436.375 l
459.7758 448.8749 l
f*
459.7758 436.375 m
377.5507 436.375 l
377.5507 436.875 l
459.7758 436.875 l
f*
543.3086 448.8749 m
543.3086 436.375 l
542.8086 436.375 l
542.8086 448.8749 l
f*
542.8086 436.375 m
460.2759 436.375 l
460.2759 436.875 l
542.8086 436.875 l
f*
575.9989 436.375 m
543.3086 436.375 l
543.3086 436.875 l
575.9989 436.875 l
f*
211.7098 436.375 m
211.7098 423.8751 l
211.2097 423.8751 l
211.2097 436.375 l
f*
211.2097 423.8751 m
36 423.8751 l
36 424.3751 l
211.2097 424.3751 l
f*
279.885 436.375 m
279.885 423.8751 l
279.3849 423.8751 l
279.3849 436.375 l
f*
279.3849 423.8751 m
211.7098 423.8751 l
211.7098 424.3751 l
279.3849 424.3751 l
f*
377.5507 436.375 m
377.5507 423.8751 l
377.0507 423.8751 l
377.0507 436.375 l
f*
377.0507 423.8751 m
279.885 423.8751 l
279.885 424.3751 l
377.0507 424.3751 l
f*
460.2759 436.375 m
460.2759 423.8751 l
459.7758 423.8751 l
459.7758 436.375 l
f*
459.7758 423.8751 m
377.5507 423.8751 l
377.5507 424.3751 l
459.7758 424.3751 l
f*
543.3086 436.375 m
543.3086 423.8751 l
542.8086 423.8751 l
542.8086 436.375 l
f*
542.8086 423.8751 m
460.2759 423.8751 l
460.2759 424.3751 l
542.8086 424.3751 l
f*
575.9989 423.8751 m
543.3086 423.8751 l
543.3086 424.3751 l
575.9989 424.3751 l
f*
211.7098 423.8751 m
211.7098 411.3751 l
211.2097 411.3751 l
211.2097 423.8751 l
f*
211.2097 411.3751 m
36 411.3751 l
36 411.8751 l
211.2097 411.8751 l
f*
279.885 423.8751 m
279.885 411.3751 l
279.3849 411.3751 l
279.3849 423.8751 l
f*
279.3849 411.3751 m
211.7098 411.3751 l
211.7098 411.8751 l
279.3849 411.8751 l
f*
377.5507 423.8751 m
377.5507 411.3751 l
377.0507 411.3751 l
377.0507 423.8751 l
f*
377.0507 411.3751 m
279.885 411.3751 l
279.885 411.8751 l
377.0507 411.8751 l
f*
460.2759 423.8751 m
460.2759 411.3751 l
459.7758 411.3751 l
459.7758 423.8751 l
f*
459.7758 411.3751 m
377.5507 411.3751 l
377.5507 411.8751 l
459.7758 411.8751 l
f*
543.3086 423.8751 m
543.3086 411.3751 l
542.8086 411.3751 l
542.8086 423.8751 l
f*
542.8086 411.3751 m
460.2759 411.3751 l
460.2759 411.8751 l
542.8086 411.8751 l
f*
575.9989 411.3751 m
543.3086 411.3751 l
543.3086 411.8751 l
575.9989 411.8751 l
f*
211.7098 411.3751 m
211.7098 398.8752 l
211.2097 398.8752 l
211.2097 411.3751 l
f*
211.2097 398.8752 m
36 398.8752 l
36 399.3752 l
211.2097 399.3752 l
f*
279.885 411.3751 m
279.885 398.8752 l
279.3849 398.8752 l
279.3849 411.3751 l
f*
279.3849 398.8752 m
211.7098 398.8752 l
211.7098 399.3752 l
279.3849 399.3752 l
f*
377.5507 411.3751 m
377.5507 398.8752 l
377.0507 398.8752 l
377.0507 411.3751 l
f*
377.0507 398.8752 m
279.885 398.8752 l
279.885 399.3752 l
377.0507 399.3752 l
f*
460.2759 411.3751 m
460.2759 398.8752 l
459.7758 398.8752 l
459.7758 411.3751 l
f*
459.7758 398.8752 m
377.5507 398.8752 l
377.5507 399.3752 l
459.7758 399.3752 l
f*
543.3086 411.3751 m
543.3086 398.8752 l
542.8086 398.8752 l
542.8086 411.3751 l
f*
542.8086 398.8752 m
460.2759 398.8752 l
460.2759 399.3752 l
542.8086 399.3752 l
f*
575.9989 398.8752 m
543.3086 398.8752 l
543.3086 399.3752 l
575.9989 399.3752 l
f*
575.9989 365.125 m
36 365.125 l
36 365.6251 l
575.9989 365.6251 l
f*
0.83 0.64 0.02 0 k
463.2945 675.7795 m
528.1512 675.7795 l
h
f*
548.5606 675.7795 m
557.348 675.7795 l
h
f*
463.2945 663.3071 m
525.4866 663.3071 l
h
f*
548.5606 663.3071 m
557.348 663.3071 l
h
f*
463.2945 650.778 m
528.1512 650.778 l
h
f*
548.5606 650.778 m
557.348 650.778 l
h
f*
463.2945 638.3055 m
526.8472 638.3055 l
h
f*
548.5606 638.3055 m
557.348 638.3055 l
h
f*
463.2945 625.7764 m
525.8835 625.7764 l
h
f*
548.5606 625.7764 m
557.348 625.7764 l
h
f*
463.2945 613.3039 m
526.3937 613.3039 l
h
f*
548.5606 613.3039 m
557.348 613.3039 l
h
f*
463.2945 600.7748 m
524.6929 600.7748 l
h
f*
548.5606 600.7748 m
557.348 600.7748 l
h
f*
463.2945 588.3024 m
521.178 588.3024 l
h
f*
548.5606 588.3024 m
557.348 588.3024 l
h
f*
463.2945 575.7732 m
526.8472 575.7732 l
h
f*
548.5606 575.7732 m
557.348 575.7732 l
h
f*
463.2945 563.3008 m
524.2394 563.3008 l
h
f*
548.5606 563.3008 m
552.926 563.3008 l
h
f*
548.5606 550.7717 m
557.348 550.7717 l
h
f*
548.5606 538.2992 m
557.348 538.2992 l
h
f*
548.5606 525.7701 m
557.348 525.7701 l
h
f*
548.5606 513.2976 m
557.348 513.2976 l
h
f*
548.5606 500.8252 m
557.348 500.8252 l
h
f*
548.5606 488.2961 m
557.348 488.2961 l
h
f*
548.5606 475.8236 m
557.348 475.8236 l
h
f*
548.5606 463.2945 m
557.348 463.2945 l
h
f*
548.5606 450.822 m
557.348 450.822 l
h
f*
548.5606 438.2929 m
557.348 438.2929 l
h
f*
548.5606 425.8205 m
557.348 425.8205 l
h
f*
548.5606 413.2913 m
557.348 413.2913 l
h
f*
548.5606 400.8189 m
557.348 400.8189 l
h
f*
36 352.063 m
186.7465 352.063 l
h
f*
0 g
7.9999 0 0 7.9999 36 716.7118 cm
BT
/F3 1 Tf
1 TL
-0.005 Tc
0 0 Td
(Table)Tj
2.7992 0 Td
(1.)Tj
1.2614 0 Td
(The)Tj
1.9843 0 Td
(list)Tj
1.6441 0 Td
(of)Tj
1.1551 0 Td
(fungal)Tj
3.189 0 Td
(genomes)Tj
4.5567 0 Td
(used)Tj
2.5229 0 Td
(for)Tj
1.5378 0 Td
(compar)Tj
3.5575 0 Td
(ative)Tj
2.4591 0 Td
(analysis)Tj
4.1103 0 Td
(with)Tj
/F14 1 Tf
2.2039 0 Td
(C)Tj
/F3 1 Tf
(.)Tj
/F14 1 Tf
1.2047 0 Td
(truncatum)Tj
/F3 1 Tf
5.0458 0 Td
(sequence)Tj
4.5496 0 Td
(d)Tj
0.8291 0 Td
(in)Tj
1.0985 0 Td
(the)Tj
1.7008 0 Td
(present)Tj
3.7772 0 Td
(study)Tj
2.8559 0 Td
(\(in)Tj
1.4315 0 Td
(bold\).)Tj
0 Tc
-55.4744 -1.8567 Td
(Organism)Tj
22.2167 0 Td
(Strain)Tj
8.5181 0 Td
(Host)Tj
12.2104 0 Td
(Origin)Tj
10.3394 0 Td
(Accessio)Tj
4.3583 0 Td
(n)Tj
0.8433 0 Td
(no.)Tj
5.1804 0 Td
(Ref.)Tj
/F14 1 Tf
-63.6666 -1.559 Td
(C)Tj
/F3 1 Tf
(.)Tj
/F14 1 Tf
1.2259 0 Td
(truncatum)Tj
/F3 1 Tf
21.1112 0 Td
(MTCC)Tj
3.1111 0 Td
(#3414)Tj
/F14 1 Tf
5.4142 0 Td
(Capsicu)Tj
3.8693 0 Td
(m)Tj
1.1126 0 Td
(annuum)Tj
/F3 1 Tf
7.2213 0 Td
(India)Tj
10.3466 0 Td
(NBAU00)Tj
3.9614 0 Td
(000000)Tj
/F0 1 Tf
6.4135 0 Td
(-)Tj
/F6 1 Tf
-63.7871 -1.5662 Td
(C)Tj
/F0 1 Tf
(.)Tj
/F6 1 Tf
1.2259 0 Td
(graminicola)Tj
/F0 1 Tf
21.1112 0 Td
(M1.001)Tj
/F6 1 Tf
8.5253 0 Td
(Zea)Tj
1.9417 0 Td
(mays)Tj
/F0 1 Tf
10.2615 0 Td
(USA)Tj
0.83 0.64 0.02 0 k
10.3466 0 Td
(ACOD0)Tj
3.4228 0 Td
(0000000.)Tj
4.1316 0 Td
(1)Tj
0 g
2.8205 0 Td
([)Tj
0.83 0.64 0.02 0 k
(18)Tj
0 g
(])Tj
/F6 1 Tf
-63.7871 -1.559 Td
(C)Tj
/F0 1 Tf
(.)Tj
/F6 1 Tf
1.2259 0 Td
(higginsianu)Tj
5.0032 0 Td
(m)Tj
/F0 1 Tf
16.108 0 Td
(IMI)Tj
1.6229 0 Td
(349063)Tj
/F6 1 Tf
6.9024 0 Td
(Brassica)Tj
4.0394 0 Td
(rapa)Tj
/F0 1 Tf
8.1638 0 Td
(Trinidad)Tj
3.8127 0 Td
(&)Tj
0.9 0 Td
(Tobago)Tj
0.83 0.64 0.02 0 k
5.6339 0 Td
(LTAN0)Tj
3.0898 0 Td
(0000000.1)Tj
0 g
7.2851 0 Td
([)Tj
0.83 0.64 0.02 0 k
(19)Tj
0 g
(])Tj
/F6 1 Tf
-63.7871 -1.5662 Td
(C)Tj
/F0 1 Tf
(.)Tj
/F6 1 Tf
1.2259 0 Td
(orbiculare)Tj
/F0 1 Tf
21.1112 0 Td
(MAFF)Tj
2.9552 0 Td
(240422)Tj
/F6 1 Tf
5.5701 0 Td
(Cucumis)Tj
4.089 0 Td
(sativus)Tj
/F0 1 Tf
8.1142 0 Td
(Japan)Tj
0.83 0.64 0.02 0 k
10.3466 0 Td
(AMCV0)Tj
3.4228 0 Td
(0000000.)Tj
4.1316 0 Td
(1)Tj
0 g
2.8205 0 Td
([)Tj
0.83 0.64 0.02 0 k
(20)Tj
0 g
(])Tj
/F6 1 Tf
-63.7871 -1.5591 Td
(C)Tj
/F0 1 Tf
(.)Tj
/F6 1 Tf
1.2259 0 Td
(fructicola)Tj
/F0 1 Tf
4.2095 0 Td
(\(deposi)Tj
3.2457 0 Td
(ted)Tj
1.6158 0 Td
(as)Tj
/F6 1 Tf
1.2756 0 Td
(C)Tj
/F0 1 Tf
(.)Tj
/F6 1 Tf
1.226 0 Td
(gloeosporioi)Tj
5.3362 0 Td
(des)Tj
/F0 1 Tf
(\))Tj
4.2024 0 Td
(Nara)Tj
2.3812 0 Td
(gc5)Tj
/F6 1 Tf
6.1441 0 Td
(Fragaria)Tj
3.926 0 Td
(x)Tj
0.7299 0 Td
(ananas)Tj
3.2457 0 Td
(sa)Tj
/F0 1 Tf
4.3016 0 Td
(Japan)Tj
0.83 0.64 0.02 0 k
10.3466 0 Td
(ANPB00)Tj
3.8055 0 Td
(000000.1)Tj
0 g
6.5694 0 Td
([)Tj
0.83 0.64 0.02 0 k
(20)Tj
0 g
(])Tj
/F6 1 Tf
-63.7871 -1.5661 Td
(C)Tj
/F0 1 Tf
(.)Tj
/F6 1 Tf
1.2259 0 Td
(fioriniae)Tj
/F0 1 Tf
21.1112 0 Td
(IMI)Tj
1.6229 0 Td
(504882)Tj
/F6 1 Tf
6.9024 0 Td
(Fragaria)Tj
3.926 0 Td
(x)Tj
0.7299 0 Td
(ananas)Tj
3.2457 0 Td
(sa)Tj
/F0 1 Tf
4.3016 0 Td
(New)Tj
2.2182 0 Td
(Zealand)Tj
0.83 0.64 0.02 0 k
8.1284 0 Td
(JARH00)Tj
3.6921 0 Td
(000000.1)Tj
0 g
6.6828 0 Td
([)Tj
0.83 0.64 0.02 0 k
(22)Tj
0 g
(])Tj
/F6 1 Tf
-63.7871 -1.5591 Td
(C)Tj
/F0 1 Tf
(.)Tj
/F6 1 Tf
1.2259 0 Td
(sublineola)Tj
/F0 1 Tf
21.1112 0 Td
(TX430BB)Tj
/F6 1 Tf
8.5253 0 Td
(Sorghum)Tj
4.2591 0 Td
(bicolor)Tj
/F0 1 Tf
7.9441 0 Td
(USA)Tj
0.83 0.64 0.02 0 k
10.3466 0 Td
(JMSE0)Tj
3.2032 0 Td
(0000000.1)Tj
0 g
7.1717 0 Td
([)Tj
0.83 0.64 0.02 0 k
(23)Tj
0 g
(])Tj
/F6 1 Tf
-63.7871 -1.5661 Td
(C)Tj
/F0 1 Tf
(.)Tj
/F6 1 Tf
1.2259 0 Td
(simmondsii)Tj
/F0 1 Tf
21.1112 0 Td
(CBS)Tj
2.2749 0 Td
(122122)Tj
/F6 1 Tf
6.2504 0 Td
(Carica)Tj
3.0969 0 Td
(papaya)Tj
/F0 1 Tf
9.1063 0 Td
(Australia)Tj
0.83 0.64 0.02 0 k
10.3466 0 Td
(JFBX00)Tj
3.5362 0 Td
(000000.1)Tj
0 g
6.8387 0 Td
([)Tj
0.83 0.64 0.02 0 k
(26)Tj
0 g
(])Tj
/F6 1 Tf
-63.7871 -1.5591 Td
(C)Tj
/F0 1 Tf
(.)Tj
/F6 1 Tf
1.2259 0 Td
(salicis)Tj
/F0 1 Tf
21.1112 0 Td
(CBS)Tj
2.2749 0 Td
(607.94)Tj
/F6 1 Tf
6.2504 0 Td
(Salix)Tj
/F0 1 Tf
2.3811 0 Td
(species)Tj
9.8221 0 Td
(Netherlands)Tj
0.83 0.64 0.02 0 k
10.3466 0 Td
(JFFI000)Tj
3.6496 0 Td
(00000.1)Tj
0 g
6.7253 0 Td
([)Tj
0.83 0.64 0.02 0 k
(26)Tj
0 g
(])Tj
/F6 1 Tf
-63.7871 -1.5662 Td
(C)Tj
/F0 1 Tf
(.)Tj
/F6 1 Tf
1.2259 0 Td
(nymphaeae)Tj
/F0 1 Tf
21.1112 0 Td
(IMI)Tj
1.6229 0 Td
(504889)Tj
/F6 1 Tf
6.9024 0 Td
(Fragaria)Tj
3.926 0 Td
(x)Tj
0.7299 0 Td
(ananas)Tj
3.2457 0 Td
(sa)Tj
/F0 1 Tf
4.3016 0 Td
(Denmark)Tj
0.83 0.64 0.02 0 k
10.3466 0 Td
(JEMN00)Tj
3.8055 0 Td
(000000.1)Tj
0 g
6.5694 0 Td
([)Tj
0.83 0.64 0.02 0 k
(26)Tj
0 g
(])Tj
/F6 1 Tf
-63.7871 -1.559 Td
(C)Tj
/F0 1 Tf
(.)Tj
/F6 1 Tf
1.2259 0 Td
(incanum)Tj
/F0 1 Tf
21.1112 0 Td
(MAFF)Tj
2.9552 0 Td
(238704)Tj
/F6 1 Tf
5.5701 0 Td
(Raphanus)Tj
4.7481 0 Td
(sativus)Tj
/F0 1 Tf
7.4551 0 Td
(Japan)Tj
0.83 0.64 0.02 0 k
10.3466 0 Td
(LFIW0000)Tj
4.5851 0 Td
(0000.1)Tj
0 g
5.7898 0 Td
([)Tj
0.83 0.64 0.02 0 k
(5)Tj
0 g
(])Tj
/F6 1 Tf
-63.7871 -1.5662 Td
(C)Tj
/F0 1 Tf
(.)Tj
/F6 1 Tf
1.2259 0 Td
(scovillei)Tj
/F5 1 Tf
[()]TJ
/F0 1 Tf
21.1112 0 Td
(1)Tj
/F6 1 Tf
8.5253 0 Td
(Capsicu)Tj
3.5788 0 Td
(m)Tj
1.063 0 Td
(annuum)Tj
/F0 1 Tf
7.5614 0 Td
(South)Tj
2.8276 0 Td
(Korea)Tj
7.519 0 Td
(LUXP00)Tj
3.6921 0 Td
(000000.1)Tj
6.6828 0 Td
([)Tj
0.83 0.64 0.02 0 k
(24)Tj
0 g
(])Tj
/F6 1 Tf
-63.7871 -1.5591 Td
(Verticillium)Tj
5.0244 0 Td
(alfalfa)Tj
/F0 1 Tf
17.3127 0 Td
(VaMs.102)Tj
/F6 1 Tf
8.5253 0 Td
(Medicago)Tj
4.5284 0 Td
(sativa)Tj
/F0 1 Tf
7.6748 0 Td
(USA)Tj
10.3466 0 Td
(ABPE0)Tj
3.2032 0 Td
(0000000.1)Tj
7.1717 0 Td
([)Tj
0.83 0.64 0.02 0 k
(58)Tj
0 g
(])Tj
/F6 1 Tf
-63.7871 -1.5661 Td
(V)Tj
/F0 1 Tf
(.)Tj
/F6 1 Tf
1.1763 0 Td
(dahliae)Tj
/F0 1 Tf
21.1608 0 Td
(VdLs.17)Tj
/F6 1 Tf
8.5253 0 Td
(Lactuca)Tj
3.7063 0 Td
(sativa)Tj
/F0 1 Tf
8.4969 0 Td
(USA)Tj
10.3466 0 Td
(ABJE000)Tj
4.1386 0 Td
(00000.1)Tj
6.2363 0 Td
([)Tj
0.83 0.64 0.02 0 k
(58)Tj
0 g
(])Tj
/F6 1 Tf
-63.7871 -1.5591 Td
(Fusarium)Tj
4.3724 0 Td
(graminea)Tj
4.1316 0 Td
(rum)Tj
/F0 1 Tf
13.8331 0 Td
(PH1)Tj
/F6 1 Tf
8.5253 0 Td
(Triticum)Tj
/F0 1 Tf
3.7701 0 Td
(species)Tj
8.4331 0 Td
(USA)Tj
10.3466 0 Td
(AACM0)Tj
3.4228 0 Td
(0000000.)Tj
4.1316 0 Td
(1)Tj
2.8205 0 Td
([)Tj
0.83 0.64 0.02 0 k
(59)Tj
0 g
(])Tj
/F6 1 Tf
-63.7871 -1.559 Td
(F)Tj
/F0 1 Tf
(.)Tj
/F6 1 Tf
1.1196 0 Td
(oxysporum)Tj
/F0 1 Tf
21.2175 0 Td
(FOL)Tj
2.1756 0 Td
(4287)Tj
/F6 1 Tf
6.3497 0 Td
(Solanum)Tj
4.1457 0 Td
(lycopers)Tj
3.6922 0 Td
(icum)Tj
/F0 1 Tf
4.3653 0 Td
(Spain)Tj
10.3466 0 Td
(AAXH00)Tj
3.8055 0 Td
(000000.1)Tj
6.5694 0 Td
([)Tj
0.83 0.64 0.02 0 k
(59)Tj
0 g
(])Tj
/F6 1 Tf
-63.7871 -1.5662 Td
(F)Tj
/F0 1 Tf
(.)Tj
/F6 1 Tf
1.1196 0 Td
(verticillioides)Tj
/F0 1 Tf
21.2175 0 Td
(7600)Tj
/F6 1 Tf
8.5253 0 Td
(Zea)Tj
1.9417 0 Td
(mays)Tj
/F0 1 Tf
10.2615 0 Td
(USA)Tj
10.3466 0 Td
(AAIM00)Tj
3.5362 0 Td
(000000.2)Tj
6.8387 0 Td
([)Tj
0.83 0.64 0.02 0 k
(59)Tj
0 g
(])Tj
/F6 1 Tf
-63.7871 -1.5591 Td
(Magnapo)Tj
4.1315 0 Td
(rthe)Tj
1.9417 0 Td
(oryzae)Tj
ET
Q
q
1 j
1 J
0 w
5.9998 0 0 5.3325 108.4535 480.4157 cm
BT
/F0 1 Tf
1 TL
0 0 Td
(#)Tj
ET
Q
q
1 j
1 J
0 w
7.9999 0 0 7.9999 214.696 476.9007 cm
BT
/F0 1 Tf
1 TL
0 0 Td
(7015)Tj
/F6 1 Tf
8.5252 0 Td
(Oryza)Tj
2.8843 0 Td
(sativa)Tj
/F0 1 Tf
9.319 0 Td
(French)Tj
3.3307 0 Td
(Guiana)Tj
7.0158 0 Td
(AACU000)Tj
4.4079 0 Td
(00000.3)Tj
5.967 0 Td
([)Tj
0.83 0.64 0.02 0 k
(60)Tj
0 g
(])Tj
/F6 1 Tf
-63.787 -1.5661 Td
(M)Tj
/F0 1 Tf
(.)Tj
/F6 1 Tf
1.3393 0 Td
(oryzae)Tj
/F0 1 Tf
20.9978 0 Td
(P131)Tj
/F6 1 Tf
8.5252 0 Td
(Oryza)Tj
2.8843 0 Td
(sativa)Tj
/F0 1 Tf
9.319 0 Td
(Japan)Tj
10.3465 0 Td
(AHZT000)Tj
4.252 0 Td
(00000.1)Tj
6.1229 0 Td
([)Tj
0.83 0.64 0.02 0 k
(61)Tj
0 g
(])Tj
/F6 1 Tf
-63.787 -1.5591 Td
(M)Tj
/F0 1 Tf
(.)Tj
/F6 1 Tf
1.3393 0 Td
(oryzae)Tj
/F0 1 Tf
20.9978 0 Td
(Y34)Tj
/F6 1 Tf
8.5252 0 Td
(Oryza)Tj
2.8843 0 Td
(sativa)Tj
/F0 1 Tf
9.319 0 Td
(China)Tj
10.3465 0 Td
(AHZS0)Tj
3.2032 0 Td
(0000000.1)Tj
7.1717 0 Td
([)Tj
0.83 0.64 0.02 0 k
(61)Tj
0 g
(])Tj
/F6 1 Tf
-63.787 -1.5661 Td
(N)Tj
/F0 1 Tf
(.)Tj
/F6 1 Tf
1.226 0 Td
(crassa)Tj
/F0 1 Tf
21.1111 0 Td
(OR74A)Tj
8.5252 0 Td
(-)Tj
12.2033 0 Td
(USA)Tj
10.3465 0 Td
(AABX0)Tj
3.2032 0 Td
(0000000.3)Tj
7.1717 0 Td
([)Tj
0.83 0.64 0.02 0 k
(62)Tj
0 g
(])Tj
/F6 1 Tf
-63.787 -1.5591 Td
(Trichoderm)Tj
5.0244 0 Td
(a)Tj
0.7795 0 Td
(reesei)Tj
/F0 1 Tf
16.5332 0 Td
(QM6a)Tj
8.5252 0 Td
(-)Tj
12.2033 0 Td
(Solomon)Tj
4.1457 0 Td
(Islands)Tj
6.2008 0 Td
(AAIL000)Tj
3.8055 0 Td
(00000.2)Tj
6.5694 0 Td
([)Tj
0.83 0.64 0.02 0 k
(63)Tj
0 g
(])Tj
/F6 1 Tf
-63.787 -1.5661 Td
(Botrytis)Tj
3.5504 0 Td
(cinerea)Tj
/F0 1 Tf
18.7867 0 Td
(B05.10)Tj
8.5252 0 Td
(Unknow)Tj
3.5788 0 Td
(n)Tj
8.6245 0 Td
(Germany)Tj
10.3465 0 Td
(ASM832)Tj
3.8055 0 Td
(94v1)Tj
6.5694 0 Td
([)Tj
0.83 0.64 0.02 0 k
(64)Tj
0 g
(])Tj
/F6 1 Tf
-63.787 -1.5591 Td
(Sclerotinia)Tj
4.8614 0 Td
(sclerotior)Tj
4.0253 0 Td
(um)Tj
/F0 1 Tf
13.4504 0 Td
(1980)Tj
/F6 1 Tf
8.5252 0 Td
(Phaseol)Tj
3.5788 0 Td
(us)Tj
1.2827 0 Td
(vulgari)Tj
2.9126 0 Td
(s)Tj
/F0 1 Tf
4.4292 0 Td
(USA)Tj
10.3465 0 Td
(AAGT0)Tj
3.267 0 Td
(0000000.)Tj
4.1315 0 Td
(1)Tj
2.9764 0 Td
([)Tj
0.83 0.64 0.02 0 k
(64)Tj
0 g
(])Tj
/F5 1 Tf
-63.787 -2.3457 Td
[()]TJ
/F0 1 Tf
(Gene)Tj
3.2102 0 Td
(annotations)Tj
5.3576 0 Td
(were)Tj
2.3811 0 Td
(not)Tj
1.6086 0 Td
(available)Tj
4.1387 0 Td
(for)Tj
1.3889 0 Td
(further)Tj
3.1111 0 Td
(analyses)Tj
4.1456 0 Td
(at)Tj
1.0559 0 Td
(the)Tj
1.6158 0 Td
(time)Tj
2.1047 0 Td
(of)Tj
1.063 0 Td
(writing)Tj
3.0969 0 Td
(this)Tj
1.7787 0 Td
(manusc)Tj
3.4725 0 Td
(ript.)Tj
ET
Q
q
1 j
1 J
0 w
5.9998 0 0 5.3325 36 374.6834 cm
BT
/F0 1 Tf
1 TL
0 0 Td
(#)Tj
ET
Q
q
1 j
1 J
0 w
7.9999 0 0 7.9999 41.159 371.1118 cm
BT
/F0 1 Tf
1 TL
0 0 Td
(The)Tj
1.9417 0 Td
(strain)Tj
2.6575 0 Td
(used)Tj
2.3811 0 Td
(for)Tj
1.3961 0 Td
(phylog)Tj
2.9126 0 Td
(enetic)Tj
2.8843 0 Td
(analysis)Tj
3.5788 0 Td
(.)Tj
0.83 0.64 0.02 0 k
/F11 1 Tf
-0.025 Tc
-18.3969 -2.2464 Td
(https://do)Tj
3.5574 0 Td
(i.org/10.1371/j)Tj
5.4425 0 Td
(ournal.pone)Tj
4.4079 0 Td
(.0183567.t001)Tj
ET
Q
q
1 j
1 J
0 w
576 737.1 m
36 737.1 l
36 737.6 l
576 737.6 l
f*
36 741.2598 107.1496 23.6976 re
W* n
q
107.0929 0 0 23.6409 36 741.3165 cm
q
/I0 Do
Q
Q
Q
q
0 0 612 792 re
W* n
1 j
1 J
0 w
7.9999 0 0 7.9999 322.0157 745.7952 cm
BT
/F6 1 Tf
1 TL
-0.005 Tc
0 0 Td
(Colletotrich)Tj
4.9039 0 Td
(um)Tj
1.5945 0 Td
(truncatum)Tj
/F0 1 Tf
4.5993 0 Td
(genome)Tj
3.7701 0 Td
(sequencin)Tj
4.4717 0 Td
(g)Tj
0.7653 0 Td
(and)Tj
1.8567 0 Td
(comparati)Tj
4.3158 0 Td
(ve)Tj
1.2614 0 Td
(genomics)Tj
ET
Q
q
1 j
1 J
0 w
36 48.0002 m
576 48.0002 l
576 47.5002 l
36 47.5002 l
f*
0.83 0.64 0.02 0 k
81.5811 34.9228 m
237.8835 34.9228 l
h
f*
0 g
7.9999 0 0 7.9999 36 36 cm
BT
/F0 1 Tf
1 TL
-0.005 Tc
0 0 Td
(PLOS)Tj
2.8559 0 Td
(ONE)Tj
2.3669 0 Td
(|)Tj
0.83 0.64 0.02 0 k
0.4748 0 Td
(https://doi.or)Tj
5.4142 0 Td
(g/10.137)Tj
3.8198 0 Td
(1/journal.po)Tj
5.1236 0 Td
(ne.01835)Tj
4.089 0 Td
(67)Tj
0 g
2.0906 0 Td
(August)Tj
3.2882 0 Td
(28,)Tj
1.5874 0 Td
(2017)Tj
34.0302 0 Td
(6)Tj
0.7654 0 Td
(/)Tj
ET
endstream
endobj
288 0 obj
<>stream
endstream
endobj
289 0 obj
<>stream
endstream
endobj
290 0 obj
<>stream
endstream
endobj
291 0 obj
<>stream
endstream
endobj
292 0 obj
<>stream
endstream
endobj
293 0 obj
<>stream
endstream
endobj
294 0 obj
<>stream
endstream
endobj
295 0 obj
<>stream
endstream
endobj
296 0 obj
<>stream
endstream
endobj
297 0 obj
<>stream
endstream
endobj
298 0 obj
<>stream
endstream
endobj
299 0 obj
<>stream
endstream
endobj
300 0 obj
<>stream
endstream
endobj
301 0 obj
<>stream
endstream
endobj
302 0 obj
<>stream
endstream
endobj
303 0 obj
<>stream
endstream
endobj
304 0 obj
<>stream
endstream
endobj
305 0 obj
<>stream
endstream
endobj
306 0 obj
<>stream
endstream
endobj
307 0 obj
<>stream
endstream
endobj
308 0 obj
<>stream
endstream
endobj
309 0 obj
<>stream
endstream
endobj
310 0 obj
<>stream
endstream
endobj
311 0 obj
<>stream
endstream
endobj
312 0 obj
<>stream
BT
66.402 0 Td
(31)Tj
ET
Q
endstream
endobj
313 0 obj
<>/XObject<>>>/CropBox[0 0 612 792]/MediaBox[0 0 612 792]/Parent 12 0 R/Annots 314 0 R/Contents 315 0 R/TrimBox[0 0 612 792]>>
endobj
314 0 obj
[316 0 R 317 0 R 318 0 R 319 0 R 320 0 R 321 0 R 322 0 R 323 0 R]
endobj
316 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.s002)>>
endobj
317 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.t002)>>
endobj
318 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.s001)>>
endobj
319 0 obj
<>/Border[0 0 0]/Dest(Lpone.0183567.t002)>>
endobj
320 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.s009)>>
endobj
321 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.s010)>>
endobj
322 0 obj
<>/Border[0 0 0]/A 324 0 R>>
endobj
324 0 obj
<>
endobj
323 0 obj
<>/Border[0 0 0]/A 325 0 R>>
endobj
325 0 obj
<>
endobj
315 0 obj
[326 0 R 327 0 R 328 0 R 329 0 R 330 0 R 331 0 R 332 0 R 333 0 R]
endobj
326 0 obj
<>stream
q
0.83 0.64 0.02 0 k
434.6646 576.3402 m
458.9858 576.3402 l
h
f*
501.8457 488.5228 m
530.9858 488.5228 l
h
f*
276.0945 462.5575 m
300.4157 462.5575 l
h
f*
0 g
1 j
1 J
0 w
10 0 0 10 200.0125 707.4141 cm
BT
/F8 1 Tf
1 TL
-0.004 Tc
0 0 Td
(barcode)Tj
3.4128 0 Td
(marker,)Tj
3.3619 0 Td
(and)Tj
1.7291 0 Td
(28S)Tj
1.6498 0 Td
(nuclear)Tj
3.1918 0 Td
(ribosomal)Tj
4.2406 0 Td
(large)Tj
2.16 0 Td
(subunit)Tj
3.2598 0 Td
(rRNA)Tj
2.6305 0 Td
(gene)Tj
2.0806 0 Td
(\(LSU\),)Tj
2.8744 0 Td
(which)Tj
2.6532 0 Td
(sometimes)Tj
-33.2445 -1.3039 Td
(discriminates)Tj
5.5898 0 Td
(species)Tj
2.9934 0 Td
(on)Tj
1.2756 0 Td
(its)Tj
1.1508 0 Td
(own)Tj
1.9559 0 Td
(or)Tj
1.0999 0 Td
(when)Tj
2.4037 0 Td
(combined)Tj
4.2463 0 Td
(with)Tj
1.9956 0 Td
(ITS.)Tj
1.8708 0 Td
(Conserved)Tj
4.5014 0 Td
(universal)Tj
3.8551 0 Td
(primer)Tj
-32.9383 -1.2982 Td
(pairs)Tj
2.1713 0 Td
(for)Tj
1.3833 0 Td
(ITS)Tj
1.6497 0 Td
(and)Tj
1.7291 0 Td
(LSU)Tj
1.9673 0 Td
(were)Tj
2.126 0 Td
(used)Tj
2.0579 0 Td
(to)Tj
1.0261 0 Td
(PCR)Tj
2.0636 0 Td
(amplify)Tj
3.2485 0 Td
(and)Tj
1.7291 0 Td
(sequence)Tj
3.8551 0 Td
(these)Tj
2.2564 0 Td
(genes.)Tj
2.6702 0 Td
(BLAST)Tj
3.1068 0 Td
(analysis)Tj
-33.0404 -1.2983 Td
(against)Tj
3.0273 0 Td
(the)Tj
1.4684 0 Td
(NCBI)Tj
2.5398 0 Td
(non-redundant)Tj
6.3836 0 Td
(database)Tj
3.6396 0 Td
(showed)Tj
3.2485 0 Td
(100%)Tj
2.4038 0 Td
(homology)Tj
4.2576 0 Td
(with)Tj
/F7 1 Tf
1.9956 0 Td
[()]TJ
/F8 1 Tf
(.)Tj
/F7 1 Tf
1.0658 0 Td
[(\r)7()-9()12( )6()7()22(\r)7()12()]TJ
/F8 1 Tf
(.)Tj
4.6204 0 Td
(Patho-)Tj
-34.6504 -1.2983 Td
(genicity)Tj
3.3675 0 Td
(and)Tj
1.7291 0 Td
(virulence)Tj
3.9061 0 Td
(of)Tj
1.0148 0 Td
(the)Tj
1.4684 0 Td
(cultures)Tj
3.4015 0 Td
(showing)Tj
3.583 0 Td
(conidiation)Tj
4.8132 0 Td
(were)Tj
2.1203 0 Td
(established)Tj
4.5978 0 Td
(by)Tj
1.1848 0 Td
(inoculating)Tj
-31.1865 -1.3039 Td
(chilli)Tj
2.194 0 Td
(fruits)Tj
2.3357 0 Td
(and)Tj
1.7291 0 Td
(proving)Tj
3.3505 0 Td
(Koch's)Tj
2.931 0 Td
(postulates.)Tj
4.4164 0 Td
(A)Tj
0.9071 0 Td
(highly)Tj
2.7099 0 Td
(virulent)Tj
3.3562 0 Td
(fungal)Tj
2.7269 0 Td
(strain)Tj
2.5001 0 Td
(\(MTCC)Tj
3.3902 0 Td
(no.)Tj
1.5024 0 Td
(3414\),)Tj
-34.0495 -1.2982 Td
(isolated)Tj
3.2824 0 Td
(from)Tj
2.2054 0 Td
(chilli)Tj
2.1997 0 Td
(in)Tj
1.0374 0 Td
(Puducherry,)Tj
5.1591 0 Td
(India)Tj
2.3357 0 Td
(was)Tj
1.7008 0 Td
(selected)Tj
3.3448 0 Td
(for)Tj
1.389 0 Td
(the)Tj
1.4683 0 Td
(subsequent)Tj
4.7055 0 Td
(experiments)Tj
5.1364 0 Td
(and)Tj
-33.9645 -1.2983 Td
(genome)Tj
3.4072 0 Td
(sequencing.)Tj
4.9379 0 Td
(The)Tj
1.7858 0 Td
(molecular)Tj
4.2179 0 Td
(phylogenetic)Tj
5.3235 0 Td
(analysis)Tj
3.3278 0 Td
(based)Tj
2.4718 0 Td
(on)Tj
1.2756 0 Td
(five)Tj
1.6498 0 Td
(conserved)Tj
4.2632 0 Td
(genes)Tj
2.4435 0 Td
(of)Tj
/F7 1 Tf
-35.104 -1.3039 Td
[()-2(\n)10()4()4()8(\r)11(\n)12(\r)7()-9()4()13()18()12()]TJ
/F8 1 Tf
6.0434 0 Td
(species)Tj
2.999 0 Td
(from)Tj
2.2054 0 Td
(different)Tj
3.6566 0 Td
(clades)Tj
2.6306 0 Td
(showed)Tj
3.2541 0 Td
(that)Tj
/F7 1 Tf
1.7802 0 Td
[()]TJ
/F8 1 Tf
(.)Tj
/F7 1 Tf
1.0658 0 Td
[(\r)7()-9()12( )6()7()22(\r)7()12()]TJ
/F8 1 Tf
4.3936 0 Td
(\(MTCC)Tj
3.3903 0 Td
(no.)Tj
1.5023 0 Td
(3414\),)Tj
-32.9213 -1.2983 Td
(together)Tj
3.5319 0 Td
(with)Tj
1.9956 0 Td
(the)Tj
1.474 0 Td
(other)Tj
2.3471 0 Td
(isolate)Tj
2.7552 0 Td
(of)Tj
/F7 1 Tf
1.0148 0 Td
[()]TJ
/F8 1 Tf
(.)Tj
/F7 1 Tf
1.0658 0 Td
[(\r)7()-9()12( )6()7()22(\r)7()12()]TJ
/F8 1 Tf
4.3937 0 Td
(that)Tj
1.7801 0 Td
(infects)Tj
/F7 1 Tf
2.829 0 Td
[()4()6()-3()7(\n)10()12()-4()]TJ
4.0422 0 Td
[()12()12( )6()22(\r)7()-4()]TJ
/F8 1 Tf
(,)Tj
3.3732 0 Td
(forms)Tj
2.5682 0 Td
(the)Tj
1.4683 0 Td
(trunca-)Tj
-34.6391 -1.2983 Td
(tum)Tj
1.8651 0 Td
(clade,)Tj
2.5002 0 Td
(which)Tj
2.6475 0 Td
(diverged)Tj
3.685 0 Td
(from)Tj
2.2054 0 Td
(the)Tj
1.4683 0 Td
(gloeosporioides)Tj
6.48 0 Td
(clade)Tj
2.2733 0 Td
(\()Tj
0.83 0.64 0.02 0 k
(S2)Tj
1.5137 0 Td
(Fig)Tj
0 g
(\).)Tj
2.041 0 Td
(The)Tj
1.7858 0 Td
(position)Tj
3.4922 0 Td
(of)Tj
/F7 1 Tf
1.0148 0 Td
[()]TJ
/F8 1 Tf
(.)Tj
/F7 1 Tf
1.0659 0 Td
[(\r)7()-9()12( )6()7()]TJ
-34.0382 -1.3039 Td
[(\r)7()12()]TJ
/F8 1 Tf
1.8255 0 Td
(in)Tj
1.0318 0 Td
(the)Tj
1.4683 0 Td
(cladogram)Tj
4.4504 0 Td
(confirmed)Tj
4.3993 0 Td
(its)Tj
1.1452 0 Td
(identity)Tj
3.3052 0 Td
(in)Tj
1.0374 0 Td
(the)Tj
/F7 1 Tf
1.4684 0 Td
[()-2(\n)10()4()4()8(\r)11(\n)12(\r)7()-9()4()13()18()12()]TJ
/F8 1 Tf
6.0434 0 Td
(species)Tj
2.999 0 Td
(complexes.)Tj
ET
Q
q
1 j
1 J
0 w
11.9999 0 0 11.9999 200.0125 532.6299 cm
BT
/F0 1 Tf
1 TL
-0.0033 Tc
0 0 Td
(Genome)Tj
4.0205 0 Td
(and)Tj
1.8614 0 Td
(transcriptome)Tj
6.2126 0 Td
(assembly)Tj
4.3985 0 Td
(of)Tj
/F6 1 Tf
1.0488 0 Td
(C)Tj
/F0 1 Tf
(.)Tj
/F6 1 Tf
1.2095 0 Td
(truncatum)Tj
ET
Q
q
1 j
1 J
0 w
10 0 0 10 200.0125 515.622 cm
BT
/F8 1 Tf
1 TL
-0.004 Tc
0 0 Td
(The)Tj
1.7801 0 Td
(genome)Tj
3.4072 0 Td
(of)Tj
1.0148 0 Td
(an)Tj
1.2019 0 Td
(Indian)Tj
2.8856 0 Td
(isolate)Tj
2.761 0 Td
(of)Tj
/F7 1 Tf
1.0148 0 Td
[()]TJ
/F8 1 Tf
(.)Tj
/F7 1 Tf
1.0658 0 Td
[(\r)7()-9()12( )6()7()22(\r)7()12()]TJ
/F8 1 Tf
4.3937 0 Td
(was)Tj
1.7007 0 Td
(sequenced)Tj
4.388 0 Td
(on)Tj
1.2756 0 Td
(Illumina)Tj
3.6454 0 Td
(HiSeq)Tj
2.6645 0 Td
(2000)Tj
2.1203 0 Td
(plat-)Tj
-35.3194 -1.2982 Td
(form,)Tj
2.4321 0 Td
(generating)Tj
4.4617 0 Td
(a)Tj
0.6576 0 Td
(high)Tj
2.0069 0 Td
(quality)Tj
2.9537 0 Td
(draft)Tj
2.1373 0 Td
(genome)Tj
3.4072 0 Td
(assembly)Tj
3.8268 0 Td
(consisting)Tj
4.2689 0 Td
(of)Tj
1.0148 0 Td
(6,193)Tj
2.3471 0 Td
(contigs)Tj
3.0897 0 Td
(arranged)Tj
3.7984 0 Td
(in)Tj
-36.4022 -1.3039 Td
(81)Tj
1.1678 0 Td
(scaffolds)Tj
3.6567 0 Td
(with)Tj
2.0012 0 Td
(a)Tj
0.652 0 Td
(total)Tj
2.0012 0 Td
(size)Tj
1.6895 0 Td
(of)Tj
1.0148 0 Td
(55.3)Tj
1.8708 0 Td
(Mb)Tj
1.6158 0 Td
(and)Tj
1.7348 0 Td
(N50)Tj
1.9048 0 Td
(scaffold)Tj
3.2939 0 Td
(length)Tj
2.7326 0 Td
(of)Tj
1.0148 0 Td
(1.66)Tj
1.8708 0 Td
(Mb)Tj
1.6214 0 Td
(\()Tj
0.83 0.64 0.02 0 k
(Table)Tj
2.7779 0 Td
(2)Tj
0 g
(\).)Tj
1.2643 0 Td
(The)Tj
1.7801 0 Td
(esti-)Tj
-35.6652 -1.2983 Td
(mated)Tj
2.7212 0 Td
(genome)Tj
3.4072 0 Td
(size)Tj
1.6838 0 Td
(and)Tj
1.7291 0 Td
(G-C)Tj
1.9502 0 Td
(content)Tj
3.2712 0 Td
(were)Tj
2.1203 0 Td
(comparable)Tj
4.9039 0 Td
(to)Tj
1.0261 0 Td
(most)Tj
2.2054 0 Td
(of)Tj
1.0148 0 Td
(the)Tj
1.4683 0 Td
(sequenced)Tj
4.388 0 Td
(species)Tj
2.9934 0 Td
(of)Tj
/F7 1 Tf
1.0148 0 Td
[()-2(\n)10()]TJ
-35.8977 -1.2983 Td
[()4()8(\r)11(\n)12(\r)7()-9()4()13()18()12()]TJ
/F8 1 Tf
4.7224 0 Td
(genus)Tj
2.5455 0 Td
(\()Tj
0.83 0.64 0.02 0 k
(S1)Tj
1.5081 0 Td
(Fig)Tj
0 g
(\).)Tj
2.0466 0 Td
(A)Tj
0.907 0 Td
(single)Tj
2.5285 0 Td
(scaffold)Tj
3.2939 0 Td
(\(scaffold_70_2.0\))Tj
7.0979 0 Td
(of)Tj
1.0148 0 Td
(~900)Tj
2.228 0 Td
(bp)Tj
1.2416 0 Td
(was)Tj
1.7007 0 Td
(excluded)Tj
3.7871 0 Td
(from)Tj
-34.6221 -1.3039 Td
(assembly)Tj
3.8267 0 Td
(since)Tj
2.245 0 Td
(it)Tj
0.7824 0 Td
(had)Tj
1.7121 0 Td
(adapter)Tj
3.2258 0 Td
(contamination.)Tj
6.3439 0 Td
(None)Tj
2.4378 0 Td
(of)Tj
1.0148 0 Td
(the)Tj
1.4683 0 Td
(sequences)Tj
4.2179 0 Td
(in)Tj
1.0375 0 Td
(the)Tj
/F7 1 Tf
1.4683 0 Td
[()]TJ
/F8 1 Tf
(.)Tj
/F7 1 Tf
1.0659 0 Td
[(\r)7()-9()12( )6()7()22(\r)7()12()]TJ
/F8 1 Tf
-30.8464 -1.2982 Td
(assembly)Tj
3.8267 0 Td
(showed)Tj
3.2485 0 Td
(any)Tj
1.6611 0 Td
(homology)Tj
4.2519 0 Td
(to)Tj
1.0261 0 Td
(complete)Tj
3.8778 0 Td
(mitochondrial)Tj
5.9641 0 Td
(genome)Tj
3.4072 0 Td
(sequences)Tj
4.2179 0 Td
(of)Tj
/F7 1 Tf
1.0148 0 Td
[()]TJ
/F8 1 Tf
(.)Tj
/F7 1 Tf
1.0715 0 Td
[()6()1()14(\r)11()22(\r)7()12()]TJ
/F8 1 Tf
-33.5676 -1.2983 Td
(and)Tj
/F7 1 Tf
1.7291 0 Td
[()]TJ
/F8 1 Tf
(.)Tj
/F7 1 Tf
1.0658 0 Td
[()-8()20()16()18()12( )18()4()7(\n)10()4()]TJ
/F8 1 Tf
(.)Tj
5.1023 0 Td
(The)Tj
1.7858 0 Td
(completeness)Tj
5.5729 0 Td
(of)Tj
1.0148 0 Td
(the)Tj
1.4684 0 Td
(genome)Tj
3.4072 0 Td
(assembly)Tj
3.8267 0 Td
(of)Tj
/F7 1 Tf
1.0148 0 Td
[()]TJ
/F8 1 Tf
(.)Tj
/F7 1 Tf
1.0658 0 Td
[(\r)7()-9()12( )6()7()22(\r)7()12()]TJ
/F8 1 Tf
4.3994 0 Td
(was)Tj
1.6951 0 Td
(assessed)Tj
-33.1481 -1.3039 Td
(using)Tj
2.3867 0 Td
(CEGMA)Tj
3.7474 0 Td
(that)Tj
1.7801 0 Td
(showed)Tj
3.2485 0 Td
(235)Tj
1.6441 0 Td
(complete)Tj
3.8834 0 Td
(genes)Tj
2.4378 0 Td
(out)Tj
1.5534 0 Td
(of)Tj
1.0148 0 Td
(248)Tj
1.6497 0 Td
(orthologues)Tj
4.9606 0 Td
(of)Tj
1.0148 0 Td
(core)Tj
1.9446 0 Td
(eukaryotic)Tj
-31.2659 -1.2983 Td
(genes)Tj
2.4377 0 Td
(\(CEGs\))Tj
3.2145 0 Td
(conserved)Tj
4.2576 0 Td
(in)Tj
1.0375 0 Td
(all)Tj
1.1452 0 Td
(eukaryotes)Tj
4.5184 0 Td
(in)Tj
1.0374 0 Td
(the)Tj
1.4684 0 Td
(assembled)Tj
4.32 0 Td
(genome)Tj
3.4072 0 Td
(\(94.76%)Tj
3.4469 0 Td
(coverage\).)Tj
ET
Q
q
0.45 0.36 0.35 0.01 k
1 j
1 J
0 w
200.0001 370.5012 m
576 370.5012 l
576 370.0012 l
200.0001 370.0012 l
f*
489.5291 370.0012 m
489.5291 357.5013 l
489.0291 357.5013 l
489.0291 370.0012 l
f*
489.0291 357.5013 m
200.0001 357.5013 l
200.0001 358.0013 l
489.0291 358.0013 l
f*
576 357.5013 m
489.5291 357.5013 l
489.5291 358.0013 l
576 358.0013 l
f*
489.5291 357.5013 m
489.5291 345.0013 l
489.0291 345.0013 l
489.0291 357.5013 l
f*
489.0291 345.0013 m
200.0001 345.0013 l
200.0001 345.5014 l
489.0291 345.5014 l
f*
576 345.0013 m
489.5291 345.0013 l
489.5291 345.5014 l
576 345.5014 l
f*
489.5291 345.0013 m
489.5291 332.5014 l
489.0291 332.5014 l
489.0291 345.0013 l
f*
489.0291 332.5014 m
200.0001 332.5014 l
200.0001 333.0014 l
489.0291 333.0014 l
f*
576 332.5014 m
489.5291 332.5014 l
489.5291 333.0014 l
576 333.0014 l
f*
489.5291 332.5014 m
489.5291 320.0014 l
489.0291 320.0014 l
489.0291 332.5014 l
f*
489.0291 320.0014 m
200.0001 320.0014 l
200.0001 320.5015 l
489.0291 320.5015 l
f*
576 320.0014 m
489.5291 320.0014 l
489.5291 320.5015 l
576 320.5015 l
f*
489.5291 320.0014 m
489.5291 307.5015 l
489.0291 307.5015 l
489.0291 320.0014 l
f*
489.0291 307.5015 m
200.0001 307.5015 l
200.0001 308.0015 l
489.0291 308.0015 l
f*
576 307.5015 m
489.5291 307.5015 l
489.5291 308.0015 l
576 308.0015 l
f*
489.5291 307.5015 m
489.5291 295.0016 l
489.0291 295.0016 l
489.0291 307.5015 l
f*
489.0291 295.0016 m
200.0001 295.0016 l
200.0001 295.5016 l
489.0291 295.5016 l
f*
576 295.0016 m
489.5291 295.0016 l
489.5291 295.5016 l
576 295.5016 l
f*
489.5291 295.0016 m
489.5291 282.5016 l
489.0291 282.5016 l
489.0291 295.0016 l
f*
489.0291 282.5016 m
200.0001 282.5016 l
200.0001 283.0017 l
489.0291 283.0017 l
f*
576 282.5016 m
489.5291 282.5016 l
489.5291 283.0017 l
576 283.0017 l
f*
489.5291 282.5016 m
489.5291 270.0017 l
489.0291 270.0017 l
489.0291 282.5016 l
f*
489.0291 270.0017 m
200.0001 270.0017 l
200.0001 270.5017 l
489.0291 270.5017 l
f*
576 270.0017 m
489.5291 270.0017 l
489.5291 270.5017 l
576 270.5017 l
f*
489.5291 270.0017 m
489.5291 257.5018 l
489.0291 257.5018 l
489.0291 270.0017 l
f*
489.0291 257.5018 m
200.0001 257.5018 l
200.0001 258.0018 l
489.0291 258.0018 l
f*
576 257.5018 m
489.5291 257.5018 l
489.5291 258.0018 l
576 258.0018 l
f*
489.5291 257.5018 m
489.5291 245.0018 l
489.0291 245.0018 l
489.0291 257.5018 l
f*
489.0291 245.0018 m
200.0001 245.0018 l
200.0001 245.5019 l
489.0291 245.5019 l
f*
576 245.0018 m
489.5291 245.0018 l
489.5291 245.5019 l
576 245.5019 l
f*
489.5291 245.0018 m
489.5291 232.5019 l
489.0291 232.5019 l
489.0291 245.0018 l
f*
489.0291 232.5019 m
200.0001 232.5019 l
200.0001 233.0019 l
489.0291 233.0019 l
f*
576 232.5019 m
489.5291 232.5019 l
489.5291 233.0019 l
576 233.0019 l
f*
489.5291 232.5019 m
489.5291 220.002 l
489.0291 220.002 l
489.0291 232.5019 l
f*
489.0291 220.002 m
200.0001 220.002 l
200.0001 220.502 l
489.0291 220.502 l
f*
576 220.002 m
489.5291 220.002 l
489.5291 220.502 l
576 220.502 l
f*
489.5291 220.002 m
489.5291 207.502 l
489.0291 207.502 l
489.0291 220.002 l
f*
489.0291 207.502 m
200.0001 207.502 l
200.0001 208.002 l
489.0291 208.002 l
f*
576 207.502 m
489.5291 207.502 l
489.5291 208.002 l
576 208.002 l
f*
489.5291 207.502 m
489.5291 195.0021 l
489.0291 195.0021 l
489.0291 207.502 l
f*
489.0291 195.0021 m
200.0001 195.0021 l
200.0001 195.5021 l
489.0291 195.5021 l
f*
576 195.0021 m
489.5291 195.0021 l
489.5291 195.5021 l
576 195.5021 l
f*
489.5291 195.0021 m
489.5291 182.5021 l
489.0291 182.5021 l
489.0291 195.0021 l
f*
489.0291 182.5021 m
200.0001 182.5021 l
200.0001 183.0022 l
489.0291 183.0022 l
f*
576 182.5021 m
489.5291 182.5021 l
489.5291 183.0022 l
576 183.0022 l
f*
489.5291 182.5021 m
489.5291 170.0022 l
489.0291 170.0022 l
489.0291 182.5021 l
f*
489.0291 170.0022 m
200.0001 170.0022 l
200.0001 170.5022 l
489.0291 170.5022 l
f*
576 170.0022 m
489.5291 170.0022 l
489.5291 170.5022 l
576 170.5022 l
f*
489.5291 170.0022 m
489.5291 157.5023 l
489.0291 157.5023 l
489.0291 170.0022 l
f*
489.0291 157.5023 m
200.0001 157.5023 l
200.0001 158.0023 l
489.0291 158.0023 l
f*
576 157.5023 m
489.5291 157.5023 l
489.5291 158.0023 l
576 158.0023 l
f*
489.5291 157.5023 m
489.5291 145.0023 l
489.0291 145.0023 l
489.0291 157.5023 l
f*
489.0291 145.0023 m
200.0001 145.0023 l
200.0001 145.5024 l
489.0291 145.5024 l
f*
576 145.0023 m
489.5291 145.0023 l
489.5291 145.5024 l
576 145.5024 l
f*
489.5291 145.0023 m
489.5291 132.5024 l
489.0291 132.5024 l
489.0291 145.0023 l
f*
489.0291 132.5024 m
200.0001 132.5024 l
200.0001 133.0024 l
489.0291 133.0024 l
f*
576 132.5024 m
489.5291 132.5024 l
489.5291 133.0024 l
576 133.0024 l
f*
489.5291 132.5024 m
489.5291 120.0025 l
489.0291 120.0025 l
489.0291 132.5024 l
f*
489.0291 120.0025 m
200.0001 120.0025 l
200.0001 120.5025 l
489.0291 120.5025 l
f*
576 120.0025 m
489.5291 120.0025 l
489.5291 120.5025 l
576 120.5025 l
f*
489.5291 120.0025 m
489.5291 107.5025 l
489.0291 107.5025 l
489.0291 120.0025 l
f*
489.0291 107.5025 m
200.0001 107.5025 l
200.0001 108.0026 l
489.0291 108.0026 l
f*
576 107.5025 m
489.5291 107.5025 l
489.5291 108.0026 l
576 108.0026 l
f*
489.5291 107.5025 m
489.5291 95.0026 l
489.0291 95.0026 l
489.0291 107.5025 l
f*
489.0291 95.0026 m
200.0001 95.0026 l
200.0001 95.5026 l
489.0291 95.5026 l
f*
576 95.0026 m
489.5291 95.0026 l
489.5291 95.5026 l
576 95.5026 l
f*
0.83 0.64 0.02 0 k
380.5795 196.9512 m
390.3307 196.9512 l
h
f*
407.2252 196.9512 m
416.9197 196.9512 l
h
f*
200.0126 81.9213 m
350.7591 81.9213 l
h
f*
0 g
7.9999 0 0 7.9999 200.0125 375.307 cm
BT
/F3 1 Tf
1 TL
-0.005 Tc
0 0 Td
(Table)Tj
2.7992 0 Td
(2.)Tj
1.2614 0 Td
(Assembly)Tj
4.8756 0 Td
(statistics)Tj
4.4788 0 Td
(of)Tj
1.1551 0 Td
(the)Tj
/F14 1 Tf
1.7008 0 Td
(C)Tj
/F3 1 Tf
(.)Tj
/F14 1 Tf
1.2048 0 Td
(truncatum)Tj
/F3 1 Tf
5.0457 0 Td
(genome)Tj
4.011 0 Td
(assemb)Tj
3.6639 0 Td
(ly.)Tj
/F0 1 Tf
0 Tc
-30.1963 -1.8496 Td
(Total)Tj
2.4378 0 Td
(number)Tj
3.6 0 Td
(of)Tj
1.0559 0 Td
(contigs)Tj
29.4735 0 Td
(6,193)Tj
-36.5672 -1.5661 Td
(Total)Tj
2.4378 0 Td
(number)Tj
3.6 0 Td
(of)Tj
1.0559 0 Td
(scaffolds)Tj
29.4735 0 Td
(81)Tj
-36.5672 -1.5591 Td
(Total)Tj
2.4378 0 Td
(length)Tj
2.9338 0 Td
(\(bp\))Tj
31.1956 0 Td
(55,368,95)Tj
4.4079 0 Td
(7)Tj
-40.9751 -1.5661 Td
(Mean)Tj
2.7071 0 Td
(length)Tj
2.9338 0 Td
(\(bp\))Tj
30.9263 0 Td
(683,567)Tj
-36.5672 -1.5591 Td
(Max)Tj
2.1047 0 Td
(length)Tj
2.9339 0 Td
(\(bp\))Tj
31.5286 0 Td
(3,859,631)Tj
-36.5672 -1.5662 Td
(Min)Tj
1.8283 0 Td
(length)Tj
2.9268 0 Td
(\(bp\))Tj
31.8121 0 Td
(906)Tj
-36.5672 -1.559 Td
(Largest)Tj
3.5433 0 Td
(10)Tj
1.3252 0 Td
(Total)Tj
2.4449 0 Td
(\(bp\))Tj
29.2538 0 Td
(26,251,40)Tj
4.4079 0 Td
(2)Tj
-40.9751 -1.5662 Td
(Scaffold)Tj
3.8197 0 Td
(N50)Tj
2.048 0 Td
(\(bp\))Tj
30.6995 0 Td
(1,667,354)Tj
-36.5672 -1.5591 Td
(Number)Tj
3.7559 0 Td
(of)Tj
1.063 0 Td
(Gaps)Tj
31.7483 0 Td
(6,793)Tj
-36.5672 -1.5661 Td
(Total)Tj
2.4378 0 Td
(Gap)Tj
2.1118 0 Td
(Length)Tj
3.2599 0 Td
(\(bp\))Tj
28.7577 0 Td
(2,630,941)Tj
-36.5672 -1.5591 Td
(Mean)Tj
2.7071 0 Td
(Gap)Tj
2.1118 0 Td
(Length)Tj
3.2599 0 Td
(\(bp\))Tj
28.4884 0 Td
(387)Tj
-36.5672 -1.559 Td
(Percent)Tj
3.6567 0 Td
(N's)Tj
32.9105 0 Td
(4.75%)Tj
-36.5672 -1.5662 Td
(GC)Tj
1.722 0 Td
(content)Tj
34.8452 0 Td
(49.61%)Tj
-36.5672 -1.5591 Td
(Repetitive)Tj
4.6417 0 Td
(DNA)Tj
2.3244 0 Td
(\(homology)Tj
4.8615 0 Td
(based/)Tj
/F6 1 Tf
3.2103 0 Td
(de)Tj
1.3323 0 Td
(novo)Tj
/F0 1 Tf
2.3811 0 Td
(method,)Tj
0.83 0.64 0.02 0 k
3.8197 0 Td
(S2)Tj
0 g
1.4457 0 Td
(and)Tj
0.83 0.64 0.02 0 k
1.885 0 Td
(S3)Tj
0 g
1.4457 0 Td
(Tables\))Tj
9.2198 0 Td
(0.443%)Tj
-36.5672 -1.5661 Td
(tRNA)Tj
36.5672 0 Td
(257)Tj
-36.5672 -1.5591 Td
(Refined)Tj
3.6425 0 Td
(transcripts)Tj
32.9247 0 Td
(32,566)Tj
-36.5672 -1.5661 Td
(Predict)Tj
3.0897 0 Td
(ed)Tj
1.3323 0 Td
(protein)Tj
3.267 0 Td
(coding)Tj
3.1465 0 Td
(genes)Tj
25.7317 0 Td
(13,724)Tj
-36.5672 -1.5591 Td
(Coding)Tj
3.3661 0 Td
(region)Tj
2.9835 0 Td
(in)Tj
0.9921 0 Td
(genome)Tj
29.2255 0 Td
(51%)Tj
-36.5672 -1.5662 Td
(Genes)Tj
3.1535 0 Td
(with)Tj
1.9985 0 Td
(SwissProt)Tj
4.6559 0 Td
(homolo)Tj
3.2457 0 Td
(gues)Tj
23.5136 0 Td
(66%)Tj
-36.5672 -1.559 Td
(Genes)Tj
3.1535 0 Td
(with)Tj
1.9985 0 Td
(IPR/Pfam)Tj
4.5 0 Td
(annotation)Tj
4.6276 0 Td
(s)Tj
22.2876 0 Td
(74%)Tj
-36.5672 -1.5662 Td
(Genes)Tj
3.1535 0 Td
(with)Tj
1.9985 0 Td
(GO)Tj
1.7858 0 Td
(annotations)Tj
29.6294 0 Td
(46%)Tj
-36.5672 -1.5591 Td
(Genes)Tj
3.1535 0 Td
(with)Tj
1.9985 0 Td
(AED)Tj
2.2748 0 Td
(scores)Tj
3.1606 0 Td
(between)Tj
3.9757 0 Td
(00.25)Tj
22.0041 0 Td
(82%)Tj
0.83 0.64 0.02 0 k
/F11 1 Tf
-0.025 Tc
-36.5672 -1.8779 Td
(https://d)Tj
3.0827 0 Td
(oi.org/10.1371/j)Tj
5.9173 0 Td
(ournal.pon)Tj
3.9827 0 Td
(e.0183567.t00)Tj
5.3859 0 Td
(2)Tj
ET
Q
q
1 j
1 J
0 w
576 737.1 m
36 737.1 l
36 737.6 l
576 737.6 l
f*
36 741.2598 107.1496 23.6976 re
W* n
q
107.0929 0 0 23.6409 36 741.3165 cm
q
/I0 Do
Q
Q
Q
q
0 0 612 792 re
W* n
1 j
1 J
0 w
7.9999 0 0 7.9999 322.0157 745.7952 cm
BT
/F6 1 Tf
1 TL
-0.005 Tc
0 0 Td
(Colletotrich)Tj
4.9039 0 Td
(um)Tj
1.5945 0 Td
(truncatum)Tj
/F0 1 Tf
4.5993 0 Td
(genome)Tj
3.7701 0 Td
(sequencin)Tj
4.4717 0 Td
(g)Tj
0.7653 0 Td
(and)Tj
1.8567 0 Td
(comparati)Tj
4.3158 0 Td
(ve)Tj
1.2614 0 Td
(genomics)Tj
ET
Q
q
1 j
1 J
0 w
36 48.0002 m
576 48.0002 l
576 47.5002 l
36 47.5002 l
f*
0.83 0.64 0.02 0 k
81.5811 34.9228 m
237.8835 34.9228 l
h
f*
0 g
7.9999 0 0 7.9999 36 36 cm
BT
/F0 1 Tf
1 TL
-0.005 Tc
0 0 Td
(PLOS)Tj
2.8559 0 Td
(ONE)Tj
2.3669 0 Td
(|)Tj
0.83 0.64 0.02 0 k
0.4748 0 Td
(https://doi.or)Tj
5.4142 0 Td
(g/10.137)Tj
3.8198 0 Td
(1/journal.po)Tj
5.1236 0 Td
(ne.01835)Tj
4.089 0 Td
(67)Tj
0 g
2.0906 0 Td
(August)Tj
3.2882 0 Td
(28,)Tj
1.5874 0 Td
(2017)Tj
34.0302 0 Td
(7)Tj
0.7654 0 Td
(/)Tj
ET
endstream
endobj
327 0 obj
<>stream
endstream
endobj
328 0 obj
<>stream
endstream
endobj
329 0 obj
<>stream
endstream
endobj
330 0 obj
<>stream
endstream
endobj
331 0 obj
<>stream
endstream
endobj
332 0 obj
<>stream
endstream
endobj
333 0 obj
<>stream
BT
66.402 0 Td
(31)Tj
ET
Q
endstream
endobj
334 0 obj
<>/XObject<>>>/CropBox[0 0 612 792]/MediaBox[0 0 612 792]/Parent 12 0 R/Annots 336 0 R/Contents 337 0 R/TrimBox[0 0 612 792]>>
endobj
336 0 obj
[338 0 R 339 0 R 340 0 R 341 0 R 342 0 R 343 0 R 344 0 R 345 0 R]
endobj
338 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.s008)>>
endobj
339 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref046)>>
endobj
340 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref079)>>
endobj
341 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.s011)>>
endobj
342 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.ref080)>>
endobj
343 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.s011)>>
endobj
344 0 obj
<>/Border[0 0 0]/Dest(Rpone.0183567.g001)>>
endobj
345 0 obj
<>/Border[0 0 0]/A 346 0 R>>
endobj
346 0 obj
<>
endobj
337 0 obj
[347 0 R 348 0 R 349 0 R 350 0 R 351 0 R 352 0 R 353 0 R 354 0 R 355 0 R]
endobj
347 0 obj
<>stream
q
0.83 0.64 0.02 0 k
226.7717 602.3055 m
260.7307 602.3055 l
h
f*
537.9024 348.6047 m
547.4268 348.6047 l
h
f*
549.6378 348.6047 m
559.1622 348.6047 l
h
f*
475.2567 257.6126 m
509.1591 257.6126 l
h
f*
310.7906 218.6079 m
320.2583 218.6079 l
h
f*
390.274 179.6031 m
424.1764 179.6031 l
h
f*
302.7969 107.9433 m
322.3559 107.9433 l
h
f*
0 g
1 j
1 J
0 w
10 0 0 10 200.0125 707.4141 cm
BT
/F8 1 Tf
1 TL
-0.004 Tc
0 0 Td
(However,)Tj
4.0761 0 Td
(all)Tj
1.1452 0 Td
(the)Tj
1.4684 0 Td
(partial)Tj
2.7892 0 Td
(and)Tj
1.7292 0 Td
(missing)Tj
3.3108 0 Td
(CEGs)Tj
2.5285 0 Td
(were)Tj
2.126 0 Td
(identified)Tj
4.0592 0 Td
(through)Tj
3.4412 0 Td
(TBLASTN)Tj
4.456 0 Td
(comparison)Tj
4.9776 0 Td
(of)Tj
-36.1074 -1.3039 Td
(orthologues)Tj
4.9605 0 Td
(from)Tj
2.2054 0 Td
(other)Tj
/F7 1 Tf
2.3471 0 Td
[()-2(\n)10()4()4()8(\r)11(\n)12(\r)7()-9()4()13()18()12()]TJ
/F8 1 Tf
6.0434 0 Td
(species)Tj
2.999 0 Td
(to)Tj
/F7 1 Tf
1.0262 0 Td
[()]TJ
/F8 1 Tf
(.)Tj
/F7 1 Tf
1.0658 0 Td
[(\r)7()-9()12( )6()7()22(\r)7()12()]TJ
/F8 1 Tf
4.3993 0 Td
(genome)Tj
3.4072 0 Td
(\(E-value)Tj
/F15 1 Tf
0 Tc
3.566 0 Td
(<)Tj
/F8 1 Tf
-0.004 Tc
0.9865 0 Td
(1e-10,)Tj
/F15 1 Tf
0 Tc
-33.0064 -1.2982 Td
(>)Tj
/F8 1 Tf
-0.004 Tc
(70%)Tj
2.6985 0 Td
(identity)Tj
3.3052 0 Td
(and)Tj
1.7291 0 Td
(query)Tj
2.5058 0 Td
(coverage\))Tj
4.0649 0 Td
(representing)Tj
5.2384 0 Td
(100%)Tj
2.4037 0 Td
(coverage)Tj
3.7191 0 Td
(of)Tj
1.0148 0 Td
(the)Tj
1.474 0 Td
(gene)Tj
2.0806 0 Td
(space.)Tj
2.6022 0 Td
(Another)Tj
-32.8363 -1.2983 Td
(tool)Tj
1.7744 0 Td
(BUSCO,)Tj
3.651 0 Td
(based)Tj
2.4718 0 Td
(on)Tj
1.2756 0 Td
(1,438)Tj
2.3471 0 Td
(single-copy)Tj
4.7848 0 Td
(genes)Tj
2.4435 0 Td
(present)Tj
3.1634 0 Td
(in)Tj
1.0318 0 Td
(at)Tj
0.9525 0 Td
(least)Tj
1.9842 0 Td
(90%)Tj
1.9275 0 Td
(of)Tj
1.0148 0 Td
(the)Tj
1.4741 0 Td
(fungi,)Tj
2.5398 0 Td
(reported)Tj
-32.8363 -1.2983 Td
(99%)Tj
1.9275 0 Td
(coverage)Tj
3.719 0 Td
(of)Tj
1.0148 0 Td
(complete)Tj
3.8778 0 Td
(BUSCOs)Tj
3.7871 0 Td
(with)Tj
1.9955 0 Td
(1,325)Tj
2.3471 0 Td
(single-copy)Tj
4.7849 0 Td
(orthologues)Tj
4.9606 0 Td
(detected)Tj
3.5659 0 Td
(in)Tj
1.0318 0 Td
(the)Tj
/F7 1 Tf
1.474 0 Td
[()]TJ
/F8 1 Tf
(.)Tj
/F7 1 Tf
1.0659 0 Td
[(\r)7()-9()12( )]TJ
-35.5519 -1.3039 Td
[()7()22(\r)7()12()]TJ
/F8 1 Tf
2.6815 0 Td
(genome)Tj
3.4072 0 Td
(assembly.)Tj
-4.8925 -1.2982 Td
(RNA-Seq)Tj
4.0195 0 Td
(was)Tj
1.7007 0 Td
(carried)Tj
3.0388 0 Td
(out)Tj
1.5533 0 Td
(with)Tj
1.9956 0 Td
(three)Tj
/F7 1 Tf
2.2677 0 Td
[()12( )]TJ
1.0148 0 Td
[()-13()14(\r)7()20(\n)]TJ
/F8 1 Tf
2.0409 0 Td
(samples)Tj
3.3846 0 Td
(of)Tj
/F7 1 Tf
1.0148 0 Td
[()]TJ
/F8 1 Tf
(.)Tj
/F7 1 Tf
1.0658 0 Td
[(\r)7()-9()12( )6()7()22(\r)7()12()]TJ
/F8 1 Tf
4.3994 0 Td
(and)Tj
1.7291 0 Td
(three)Tj
/F7 1 Tf
2.262 0 Td
[()12( )]TJ
1.0148 0 Td
[()10()4()16( )22(\r)11()]TJ
/F8 1 Tf
-33.698 -1.2983 Td
(samples)Tj
3.3788 0 Td
(of)Tj
1.0148 0 Td
(inoculated)Tj
4.4277 0 Td
(chillies)Tj
2.982 0 Td
(at)Tj
0.9525 0 Td
(different)Tj
3.6566 0 Td
(time)Tj
2.024 0 Td
(points)Tj
2.7212 0 Td
(giving)Tj
2.6872 0 Td
(13.739.5)Tj
4.0422 0 Td
(million)Tj
3.1238 0 Td
(processed)Tj
4.1329 0 Td
(PE)Tj
-35.1437 -1.3039 Td
(reads)Tj
2.3357 0 Td
(\()Tj
0.83 0.64 0.02 0 k
(S1)Tj
1.5137 0 Td
(Table)Tj
0 g
(\).)Tj
3.0047 0 Td
(~90%)Tj
2.5115 0 Td
(of)Tj
/F7 1 Tf
1.0148 0 Td
[()12( )]TJ
1.0148 0 Td
[()-13()14(\r)7()20(\n)]TJ
/F8 1 Tf
2.0409 0 Td
(processed)Tj
4.1385 0 Td
(reads)Tj
2.3358 0 Td
(\(super-reads,)Tj
5.4538 0 Td
(PEs)Tj
1.7121 0 Td
(and)Tj
1.7291 0 Td
(singletons\))Tj
4.5865 0 Td
(mapped)Tj
-33.3919 -1.2983 Td
(to)Tj
1.0261 0 Td
(the)Tj
/F7 1 Tf
1.4683 0 Td
[()]TJ
/F8 1 Tf
(.)Tj
/F7 1 Tf
1.0658 0 Td
[(\r)7()-9()12( )6()7()22(\r)7()12()]TJ
/F8 1 Tf
4.3994 0 Td
(genome,)Tj
3.6283 0 Td
(while)Tj
/F15 1 Tf
0 Tc
2.3698 0 Td
(>)Tj
/F8 1 Tf
-0.004 Tc
(88%)Tj
2.6985 0 Td
(of)Tj
1.0148 0 Td
(reads)Tj
2.3414 0 Td
(from)Tj
2.2054 0 Td
(each)Tj
/F7 1 Tf
2.0296 0 Td
[()12( )]TJ
1.0148 0 Td
[()10()4()16( )22(\r)11()]TJ
/F8 1 Tf
2.7269 0 Td
(sample)Tj
3.0217 0 Td
(mapped)Tj
3.4582 0 Td
(to)Tj
1.0262 0 Td
(the)Tj
-35.4952 -1.2983 Td
(chilli)Tj
2.194 0 Td
(genome.)Tj
3.6339 0 Td
(The)Tj
1.7859 0 Td
(reads)Tj
2.3357 0 Td
(from)Tj
/F7 1 Tf
2.2053 0 Td
[()12( )]TJ
1.0148 0 Td
[()10()4()16( )22(\r)11()]TJ
/F8 1 Tf
2.7326 0 Td
(samples)Tj
3.3789 0 Td
(which)Tj
2.6532 0 Td
(failed)Tj
2.4038 0 Td
(to)Tj
1.0261 0 Td
(map)Tj
1.9899 0 Td
(on)Tj
1.2756 0 Td
(the)Tj
1.4683 0 Td
(chilli)Tj
2.1997 0 Td
(genome)Tj
-32.2977 -1.3039 Td
(were)Tj
2.1203 0 Td
(aligned)Tj
3.135 0 Td
(to)Tj
1.0262 0 Td
(the)Tj
/F7 1 Tf
1.4683 0 Td
[()]TJ
/F8 1 Tf
(.)Tj
/F7 1 Tf
1.0658 0 Td
[(\r)7()-9()12( )6()7()22(\r)7()12()]TJ
/F8 1 Tf
4.3937 0 Td
(genome.)Tj
3.634 0 Td
(Few)Tj
1.8539 0 Td
(reads)Tj
2.3414 0 Td
(\(0.0048%\))Tj
4.2576 0 Td
(from)Tj
2.2053 0 Td
(0)Tj
0.6973 0 Td
(hpi)Tj
1.5307 0 Td
(mapped)Tj
3.4639 0 Td
(to)Tj
1.0205 0 Td
(the)Tj
1.474 0 Td
(fun-)Tj
-35.6879 -1.2982 Td
(gal)Tj
1.3662 0 Td
(genome,)Tj
3.6284 0 Td
(while)Tj
2.3697 0 Td
(a)Tj
0.6576 0 Td
(total)Tj
2.0013 0 Td
(of)Tj
1.0148 0 Td
(36%)Tj
2.4434 0 Td
(reads)Tj
2.3414 0 Td
(from)Tj
2.2054 0 Td
(24)Tj
1.1678 0 Td
(and)Tj
1.7348 0 Td
(72)Tj
1.1679 0 Td
(hpi)Tj
1.5307 0 Td
(mapped)Tj
3.4639 0 Td
(to)Tj
1.0262 0 Td
(the)Tj
1.4683 0 Td
(fungal)Tj
2.7269 0 Td
(genome.)Tj
3.634 0 Td
(The)Tj
-35.9487 -1.2983 Td
(processed)Tj
4.1328 0 Td
(reads)Tj
2.3414 0 Td
(from)Tj
2.2054 0 Td
(three)Tj
/F7 1 Tf
2.262 0 Td
[()12( )]TJ
1.0148 0 Td
[()-13()14(\r)7()20(\n)]TJ
/F8 1 Tf
2.0466 0 Td
(samples)Tj
3.3846 0 Td
(and)Tj
1.7291 0 Td
(the)Tj
/F7 1 Tf
1.4683 0 Td
[()12( )]TJ
1.0148 0 Td
[()10()4()16( )22(\r)11()]TJ
/F8 1 Tf
2.7269 0 Td
(reads)Tj
2.3414 0 Td
(mapping)Tj
3.7871 0 Td
(to)Tj
/F7 1 Tf
1.0261 0 Td
[()]TJ
/F8 1 Tf
(.)Tj
/F7 1 Tf
1.0658 0 Td
[(\r)7()-9()12( )6()7()22(\r)7()12()]TJ
/F8 1 Tf
-32.5471 -1.3039 Td
(genome)Tj
3.4072 0 Td
(were)Tj
2.1203 0 Td
(used)Tj
2.0636 0 Td
(for)Tj
/F7 1 Tf
1.3833 0 Td
[()4()]TJ
1.1112 0 Td
[( )6(\n)12()3(\n)]TJ
/F8 1 Tf
2.1089 0 Td
(transcriptome)Tj
5.862 0 Td
(assembly)Tj
3.8268 0 Td
(using)Tj
2.3867 0 Td
(Trinity)Tj
3.0388 0 Td
(and)Tj
1.7347 0 Td
(comprising)Tj
4.7679 0 Td
(of)Tj
1.0148 0 Td
(57,383)Tj
-34.8262 -1.2983 Td
(transcripts,)Tj
4.6941 0 Td
(while)Tj
2.3697 0 Td
(genome-guided)Tj
6.497 0 Td
(assembly)Tj
3.8268 0 Td
(resulted)Tj
3.4015 0 Td
(in)Tj
1.0318 0 Td
(38,425)Tj
2.8233 0 Td
(transcripts.)Tj
4.6998 0 Td
(94,309)Tj
2.8233 0 Td
(non-redun-)Tj
-32.1673 -1.2982 Td
(dant)Tj
2.0295 0 Td
(transcripts)Tj
4.4674 0 Td
(from)Tj
2.2054 0 Td
(both)Tj
2.0636 0 Td
(the)Tj
1.4683 0 Td
(assemblies)Tj
4.422 0 Td
(were)Tj
2.126 0 Td
(retained.)Tj
3.736 0 Td
(The)Tj
1.7858 0 Td
(protein)Tj
3.1522 0 Td
(coding)Tj
2.9593 0 Td
(ORFs)Tj
2.4775 0 Td
(were)Tj
2.1203 0 Td
(pre-)Tj
-35.0133 -1.2983 Td
(dicted)Tj
2.6872 0 Td
(by)Tj
1.1792 0 Td
(aligning)Tj
3.4639 0 Td
(these)Tj
2.2564 0 Td
(transcripts)Tj
4.4673 0 Td
(to)Tj
/F7 1 Tf
1.0262 0 Td
[()]TJ
/F8 1 Tf
(.)Tj
/F7 1 Tf
1.0658 0 Td
[(\r)7()-9()12( )6()7()22(\r)7()12()]TJ
/F8 1 Tf
4.3993 0 Td
(genome)Tj
3.4073 0 Td
(through)Tj
3.4469 0 Td
(PASA,)Tj
2.8459 0 Td
(generating)Tj
4.4674 0 Td
(a)Tj
-34.7128 -1.3039 Td
(refined)Tj
3.067 0 Td
(transcriptome)Tj
5.862 0 Td
(with)Tj
1.9956 0 Td
(32,566)Tj
2.8233 0 Td
(sequences.)Tj
4.4447 0 Td
(25,208)Tj
2.8233 0 Td
(longest)Tj
3.0727 0 Td
(full)Tj
1.525 0 Td
(length)Tj
2.7326 0 Td
(ORFs)Tj
2.4775 0 Td
(identified)Tj
4.0592 0 Td
(by)Tj
-34.8829 -1.2983 Td
(TransDecoder)Tj
5.9583 0 Td
(module)Tj
3.2712 0 Td
(of)Tj
1.0148 0 Td
(PASA)Tj
2.6249 0 Td
(were)Tj
2.1203 0 Td
(taken)Tj
2.4207 0 Td
(as)Tj
1.0148 0 Td
(training)Tj
3.4186 0 Td
(set)Tj
1.3039 0 Td
(for)Tj
/F7 1 Tf
1.389 0 Td
[()22()]TJ
1.1792 0 Td
[()12( )18()14(\r)7()4(\n)]TJ
/F8 1 Tf
2.313 0 Td
(gene)Tj
2.0807 0 Td
(model)Tj
2.7439 0 Td
(prediction.)Tj
ET
Q
q
1 j
1 J
0 w
11.9999 0 0 11.9999 200.0125 431.7165 cm
BT
/F0 1 Tf
1 TL
-0.0033 Tc
0 0 Td
(Genome)Tj
4.0205 0 Td
(annotation)Tj
ET
Q
q
1 j
1 J
0 w
10 0 0 10 200.0125 414.7086 cm
BT
/F8 1 Tf
1 TL
-0.004 Tc
0 0 Td
(The)Tj
1.7801 0 Td
(genome)Tj
3.4072 0 Td
(annotation)Tj
4.6148 0 Td
(was)Tj
1.6951 0 Td
(performed)Tj
4.473 0 Td
(using)Tj
2.3868 0 Td
(MAKER2)Tj
4.1386 0 Td
(pipeline)Tj
3.4299 0 Td
(by)Tj
1.1792 0 Td
(integrating)Tj
4.6091 0 Td
(the)Tj
1.4683 0 Td
(species-)Tj
-33.1821 -1.2982 Td
(specific)Tj
3.1917 0 Td
(RNA-Seq)Tj
4.0139 0 Td
(evidence,)Tj
3.9401 0 Td
(protein)Tj
3.1521 0 Td
(homology)Tj
4.2576 0 Td
(from)Tj
2.2054 0 Td
(SwissProt)Tj
4.1045 0 Td
(database)Tj
3.6397 0 Td
(and)Tj
1.7291 0 Td
(other)Tj
/F7 1 Tf
2.3471 0 Td
[()-2(\n)10()4()4()8(\r)11(\n)12(\r)7()-9()]TJ
-32.5812 -1.3039 Td
[()13()18()12()]TJ
/F8 1 Tf
2.4037 0 Td
(species,)Tj
3.2202 0 Td
(and)Tj
/F7 1 Tf
1.7291 0 Td
[()22()]TJ
1.1848 0 Td
[()12( )18()14(\r)7()4(\n)]TJ
/F8 1 Tf
2.3131 0 Td
(gene)Tj
2.0806 0 Td
(predictions)Tj
4.7282 0 Td
(to)Tj
1.0261 0 Td
(get)Tj
1.4117 0 Td
(consensus)Tj
4.2802 0 Td
(gene)Tj
2.0807 0 Td
(models.)Tj
3.3278 0 Td
(A)Tj
0.9071 0 Td
(total)Tj
2.0012 0 Td
(of)Tj
1.0148 0 Td
(13,724)Tj
-33.7093 -1.2983 Td
(protein)Tj
3.1521 0 Td
(coding)Tj
2.9593 0 Td
(genes)Tj
2.4435 0 Td
(were)Tj
2.1203 0 Td
(predicted)Tj
4.0025 0 Td
(in)Tj
/F7 1 Tf
1.0318 0 Td
[()]TJ
/F8 1 Tf
(.)Tj
/F7 1 Tf
1.0658 0 Td
[(\r)7()-9()12( )6()7()22(\r)7()12()]TJ
/F8 1 Tf
4.3993 0 Td
(assembly.)Tj
4.0535 0 Td
(Annotation)Tj
4.8586 0 Td
(Edit)Tj
1.8822 0 Td
(Distance)Tj
-31.9689 -1.2983 Td
(\(AED\),)Tj
3.1124 0 Td
(a)Tj
0.6576 0 Td
(quantitative)Tj
4.9776 0 Td
(measure)Tj
3.5773 0 Td
(that)Tj
1.7802 0 Td
(shows)Tj
2.6588 0 Td
(the)Tj
1.474 0 Td
(high)Tj
2.007 0 Td
(congruency)Tj
4.9152 0 Td
(of)Tj
1.0148 0 Td
(each)Tj
2.0239 0 Td
(annotated)Tj
4.2406 0 Td
(transcript)Tj
-32.4394 -1.3039 Td
(with)Tj
1.9955 0 Td
(its)Tj
1.1452 0 Td
(supporting)Tj
4.6035 0 Td
(evidence)Tj
3.7133 0 Td
(if)Tj
0.771 0 Td
(it)Tj
0.7881 0 Td
(is)Tj
0.8447 0 Td
(close)Tj
2.1826 0 Td
(to)Tj
1.0262 0 Td
(0,)Tj
0.9184 0 Td
(was)Tj
1.7008 0 Td
(used)Tj
2.0636 0 Td
(to)Tj
1.0204 0 Td
(assess)Tj
2.5229 0 Td
(the)Tj
1.4683 0 Td
(annotated)Tj
4.2406 0 Td
(genes)Tj
2.4435 0 Td
([)Tj
0.83 0.64 0.02 0 k
(46)Tj
0 g
(,)Tj
0.83 0.64 0.02 0 k
(79)Tj
0 g
(].)Tj
-33.4486 -1.2982 Td
(11,315)Tj
2.8232 0 Td
(genes)Tj
2.4435 0 Td
(had)Tj
1.7064 0 Td
(AED)Tj
2.211 0 Td
(scores)Tj
2.6646 0 Td
(between)Tj
3.5319 0 Td
(0)Tj
0.6917 0 Td
(and)Tj
1.7348 0 Td
(0.25,)Tj
2.0976 0 Td
(while)Tj
2.3641 0 Td
(10,807)Tj
2.8233 0 Td
(genes)Tj
2.4434 0 Td
(had)Tj
1.7121 0 Td
(AED)Tj
2.2054 0 Td
(of)Tj
/F15 1 Tf
0 Tc
1.0148 0 Td
(<)Tj
/F8 1 Tf
-0.004 Tc
(0.2.)Tj
2.3981 0 Td
(In)Tj
-34.8659 -1.2983 Td
(contrast,)Tj
3.685 0 Td
(only)Tj
1.9785 0 Td
(364)Tj
1.6441 0 Td
(genes)Tj
2.4435 0 Td
(had)Tj
1.7121 0 Td
(AED)Tj
2.2053 0 Td
(between)Tj
3.532 0 Td
(0.75)Tj
1.8708 0 Td
(and)Tj
1.7291 0 Td
(1.)Tj
0.9241 0 Td
(Some)Tj
2.4435 0 Td
(of)Tj
1.0148 0 Td
(the)Tj
1.4683 0 Td
(gene)Tj
2.0806 0 Td
(models)Tj
3.1068 0 Td
(were)Tj
2.1203 0 Td
(ran-)Tj
-33.9588 -1.3039 Td
(domly)Tj
2.7722 0 Td
(inspected)Tj
4.0138 0 Td
(for)Tj
1.3833 0 Td
(any)Tj
1.6611 0 Td
(annotation)Tj
4.6091 0 Td
(bias.)Tj
2.0126 0 Td
(9,074)Tj
2.3471 0 Td
(predicted)Tj
4.0025 0 Td
(proteins)Tj
3.5149 0 Td
(had)Tj
1.7065 0 Td
(known)Tj
3.0047 0 Td
(homologues)Tj
5.1137 0 Td
(in)Tj
-36.1415 -1.2983 Td
(the)Tj
1.4683 0 Td
(SwissProt)Tj
4.1045 0 Td
(database.)Tj
3.8665 0 Td
(A)Tj
0.9014 0 Td
(functional)Tj
4.3086 0 Td
(annotation)Tj
4.6148 0 Td
(could)Tj
2.4491 0 Td
(be)Tj
1.1509 0 Td
(assigned)Tj
3.6056 0 Td
(through)Tj
3.4469 0 Td
(InterProScan)Tj
5.5219 0 Td
(to)Tj
-35.4385 -1.2983 Td
(1,522)Tj
2.347 0 Td
(out)Tj
1.5534 0 Td
(of)Tj
1.0148 0 Td
(the)Tj
1.4683 0 Td
(4,650)Tj
2.3471 0 Td
(proteins)Tj
3.5149 0 Td
(which)Tj
2.6533 0 Td
(had)Tj
1.7064 0 Td
(no)Tj
1.2756 0 Td
(homologues)Tj
5.1137 0 Td
(in)Tj
1.0318 0 Td
(SwissProt)Tj
4.1045 0 Td
(database.)Tj
3.8664 0 Td
(10,189)Tj
2.8233 0 Td
(pro-)Tj
-34.8205 -1.3039 Td
(teins)Tj
2.1146 0 Td
(with)Tj
2.0012 0 Td
(a)Tj
0.652 0 Td
(recognizable)Tj
5.2497 0 Td
(InterPro)Tj
3.6397 0 Td
(\(IPR\))Tj
2.4208 0 Td
(and/or)Tj
2.9366 0 Td
(Pfam)Tj
2.3244 0 Td
(domain)Tj
3.3222 0 Td
(were)Tj
2.1203 0 Td
(identified)Tj
4.0592 0 Td
(in)Tj
/F7 1 Tf
1.0375 0 Td
[()]TJ
/F8 1 Tf
(.)Tj
/F7 1 Tf
1.0658 0 Td
[(\r)7()-9()12( )6()7()22(\r)7()12()]TJ
/F8 1 Tf
-32.944 -1.2982 Td
(with)Tj
1.9955 0 Td
(gene)Tj
2.0806 0 Td
(ontology)Tj
3.7531 0 Td
(\(GO\))Tj
2.3641 0 Td
(terms)Tj
2.4944 0 Td
(assigned)Tj
3.6057 0 Td
(to)Tj
1.0261 0 Td
(6,385)Tj
2.3471 0 Td
(predicted)Tj
4.0025 0 Td
(proteins)Tj
3.5149 0 Td
(\()Tj
0.83 0.64 0.02 0 k
(S4)Tj
1.5081 0 Td
(Table)Tj
0 g
(\).)Tj
3.0103 0 Td
(Interestingly,)Tj
-31.7024 -1.2983 Td
(only)Tj
1.9729 0 Td
(65%)Tj
1.9332 0 Td
(of)Tj
1.0148 0 Td
(genes)Tj
2.4377 0 Td
(with)Tj
2.0013 0 Td
(AED)Tj
2.2053 0 Td
(scores)Tj
2.6703 0 Td
(of)Tj
/F15 1 Tf
0 Tc
1.0147 0 Td
(<)Tj
/F8 1 Tf
-0.004 Tc
(0.25)Tj
2.6419 0 Td
(had)Tj
1.7121 0 Td
(a)Tj
0.652 0 Td
(Pfam)Tj
2.3187 0 Td
(domain,)Tj
3.549 0 Td
(whereas)Tj
3.4469 0 Td
(~80%)Tj
2.5115 0 Td
(of)Tj
1.0148 0 Td
(genes)Tj
2.4377 0 Td
(with)Tj
-35.5348 -1.2983 Td
(AED)Tj
2.211 0 Td
(scores)Tj
2.6645 0 Td
(of)Tj
/F15 1 Tf
0 Tc
1.0148 0 Td
(>)Tj
/F8 1 Tf
-0.004 Tc
(0.75)Tj
2.6419 0 Td
(had)Tj
1.7121 0 Td
(a)Tj
0.652 0 Td
(known)Tj
3.0047 0 Td
(domain.)Tj
3.5489 0 Td
(31)Tj
1.1736 0 Td
(of)Tj
1.0148 0 Td
(the)Tj
1.4683 0 Td
(37)Tj
1.1735 0 Td
(Pfam)Tj
2.3188 0 Td
(domains)Tj
3.685 0 Td
(associated)Tj
4.2576 0 Td
(with)Tj
1.9956 0 Td
(fungal)Tj
-34.5371 -1.3039 Td
(transcription)Tj
5.4311 0 Td
(factors)Tj
2.9027 0 Td
(\(TFs\))Tj
2.4037 0 Td
([)Tj
0.83 0.64 0.02 0 k
(80)Tj
0 g
(])Tj
1.8482 0 Td
(were)Tj
2.126 0 Td
(observed)Tj
3.7927 0 Td
(in)Tj
1.0375 0 Td
(493)Tj
1.6441 0 Td
(proteins)Tj
3.5149 0 Td
(in)Tj
/F7 1 Tf
1.0375 0 Td
[()]TJ
/F8 1 Tf
(.)Tj
/F7 1 Tf
1.0658 0 Td
[(\r)7()-9()12( )6()7()22(\r)7()12()]TJ
/F8 1 Tf
4.3937 0 Td
(proteome.)Tj
4.3143 0 Td
(The)Tj
-35.5122 -1.2982 Td
(most)Tj
2.2053 0 Td
(abundant)Tj
4.0478 0 Td
(domains,)Tj
3.9062 0 Td
(Zn\(2\)-Cys\(6\))Tj
5.5105 0 Td
(binuclear)Tj
3.9685 0 Td
(cluster)Tj
2.8743 0 Td
(domains)Tj
3.685 0 Td
(\(PF00172\))Tj
4.3653 0 Td
(and)Tj
1.7291 0 Td
(fungal)Tj
2.7269 0 Td
(spe-)Tj
-35.0189 -1.2983 Td
(cific)Tj
1.8878 0 Td
(transcription)Tj
5.4312 0 Td
(factor)Tj
2.5455 0 Td
(domain)Tj
3.3221 0 Td
(\(PF04082\))Tj
4.3654 0 Td
(were)Tj
2.1203 0 Td
(found)Tj
2.6192 0 Td
(in)Tj
1.0374 0 Td
(169)Tj
1.6498 0 Td
(and)Tj
1.7291 0 Td
(107)Tj
1.6441 0 Td
(proteins,)Tj
3.7417 0 Td
(respectively,)Tj
-32.0936 -1.3039 Td
(whereas)Tj
3.4412 0 Td
(125)Tj
1.6497 0 Td
(proteins)Tj
3.515 0 Td
(shared)Tj
2.863 0 Td
(both)Tj
2.0636 0 Td
(the)Tj
1.4683 0 Td
(domains)Tj
3.685 0 Td
(\()Tj
0.83 0.64 0.02 0 k
(S4)Tj
1.508 0 Td
(Table)Tj
0 g
(\).)Tj
ET
Q
q
1 j
1 J
0 w
11.9999 0 0 11.9999 200.0125 151.9937 cm
BT
/F0 1 Tf
1 TL
-0.0033 Tc
0 0 Td
(Genome)Tj
4.0205 0 Td
(synteny)Tj
ET
Q
q
1 j
1 J
0 w
10 0 0 10 200.0125 134.9858 cm
BT
/F8 1 Tf
1 TL
-0.004 Tc
0 0 Td
(The)Tj
1.7801 0 Td
(comparison)Tj
4.9776 0 Td
(of)Tj
/F7 1 Tf
1.0148 0 Td
[()]TJ
/F8 1 Tf
(.)Tj
/F7 1 Tf
1.0658 0 Td
[(\r)7()-9()12( )6()7()22(\r)7()12()]TJ
/F8 1 Tf
4.3994 0 Td
(genome)Tj
3.4072 0 Td
(assembly)Tj
3.8267 0 Td
(and)Tj
1.7292 0 Td
(gene)Tj
2.0806 0 Td
(annotation)Tj
4.6091 0 Td
(with)Tj
2.0012 0 Td
(one)Tj
1.6951 0 Td
(of)Tj
1.0148 0 Td
(the)Tj
1.4684 0 Td
(well)Tj
-35.07 -1.2982 Td
(annotated)Tj
4.2406 0 Td
(species,)Tj
/F7 1 Tf
3.2201 0 Td
[()]TJ
/F8 1 Tf
(.)Tj
/F7 1 Tf
1.0658 0 Td
[()18()10()-17()-8()12( )10()4()16( )18()12()]TJ
/F8 1 Tf
5.5332 0 Td
(revealed)Tj
3.5263 0 Td
(65)Tj
1.1678 0 Td
(syntenic)Tj
3.549 0 Td
(blocks)Tj
2.7609 0 Td
(with)Tj
1.9956 0 Td
(conserved)Tj
4.2576 0 Td
(gene)Tj
2.0806 0 Td
(order)Tj
-33.3975 -1.2983 Td
(among)Tj
2.9933 0 Td
(the)Tj
1.4684 0 Td
(two)Tj
1.7121 0 Td
(genomes)Tj
3.7644 0 Td
(\()Tj
0.83 0.64 0.02 0 k
(Fig)Tj
1.8198 0 Td
(1)Tj
0 g
(\).)Tj
1.2642 0 Td
(44)Tj
1.1679 0 Td
(scaffolds)Tj
3.6567 0 Td
(of)Tj
/F7 1 Tf
1.0148 0 Td
[()]TJ
/F8 1 Tf
(.)Tj
/F7 1 Tf
1.0715 0 Td
[(\r)7()-9()12( )6()7()22(\r)7()12()]TJ
/F8 1 Tf
4.3936 0 Td
(could)Tj
2.4548 0 Td
(be)Tj
1.1452 0 Td
(aligned)Tj
3.1351 0 Td
(with)Tj
1.9956 0 Td
(9)Tj
0.6973 0 Td
(chromo-)Tj
-33.7547 -1.3039 Td
(somes)Tj
2.6928 0 Td
(and)Tj
1.7292 0 Td
(a)Tj
0.6519 0 Td
(contig)Tj
2.7326 0 Td
(of)Tj
/F7 1 Tf
1.0148 0 Td
[()]TJ
/F8 1 Tf
(.)Tj
/F7 1 Tf
1.0658 0 Td
[()18()10()-17()-8()12( )10()4()16( )18()12()]TJ
/F8 1 Tf
5.5276 0 Td
(with)Tj
2.0012 0 Td
(9,255)Tj
2.3471 0 Td
(syntenic)Tj
3.5433 0 Td
(hits)Tj
1.6781 0 Td
(between)Tj
3.5262 0 Td
(the)Tj
1.4684 0 Td
(two)Tj
1.7121 0 Td
(species.)Tj
3.2201 0 Td
(The)Tj
-34.9112 -1.2983 Td
(size)Tj
1.6837 0 Td
(of)Tj
1.0148 0 Td
(conserved)Tj
4.2576 0 Td
(syntenic)Tj
3.549 0 Td
(blocks)Tj
2.7609 0 Td
(ranged)Tj
2.9877 0 Td
(from)Tj
2.2053 0 Td
(14)Tj
1.1736 0 Td
(kb)Tj
1.2245 0 Td
(to)Tj
1.0262 0 Td
(3.1)Tj
1.3946 0 Td
(Mb)Tj
1.6214 0 Td
(with)Tj
1.9956 0 Td
(18)Tj
1.1735 0 Td
(blocks)Tj
2.761 0 Td
(of)Tj
1.0148 0 Td
(sizes)Tj
2.0409 0 Td
(above)Tj
2.5455 0 Td
(1)Tj
ET
Q
q
1 j
1 J
0 w
576 737.1 m
36 737.1 l
36 737.6 l
576 737.6 l
f*
36 741.2598 107.1496 23.6976 re
W* n
q
107.0929 0 0 23.6409 36 741.3165 cm
q
/I0 Do
Q
Q
Q
q
0 0 612 792 re
W* n
1 j
1 J
0 w
7.9999 0 0 7.9999 322.0157 745.7952 cm
BT
/F6 1 Tf
1 TL
-0.005 Tc
0 0 Td
(Colletotrich)Tj
4.9039 0 Td
(um)Tj
1.5945 0 Td
(truncatum)Tj
/F0 1 Tf
4.5993 0 Td
(genome)Tj
3.7701 0 Td
(sequencin)Tj
4.4717 0 Td
(g)Tj
0.7653 0 Td
(and)Tj
1.8567 0 Td
(comparati)Tj
4.3158 0 Td
(ve)Tj
1.2614 0 Td
(genomics)Tj
ET
Q
q
1 j
1 J
0 w
36 48.0002 m
576 48.0002 l
576 47.5002 l
36 47.5002 l
f*
0.83 0.64 0.02 0 k
81.5811 34.9228 m
237.8835 34.9228 l
h
f*
0 g
7.9999 0 0 7.9999 36 36 cm
BT
/F0 1 Tf
1 TL
-0.005 Tc
0 0 Td
(PLOS)Tj
2.8559 0 Td
(ONE)Tj
2.3669 0 Td
(|)Tj
0.83 0.64 0.02 0 k
0.4748 0 Td
(https://doi.or)Tj
5.4142 0 Td
(g/10.137)Tj
3.8198 0 Td
(1/journal.po)Tj
5.1236 0 Td
(ne.01835)Tj
4.089 0 Td
(67)Tj
0 g
2.0906 0 Td
(August)Tj
3.2882 0 Td
(28,)Tj
1.5874 0 Td
(2017)Tj
34.0302 0 Td
(8)Tj
0.7654 0 Td
(/)Tj
ET
endstream
endobj
348 0 obj
<>stream
endstream
endobj
349 0 obj
<>stream
endstream
endobj
350 0 obj
<>stream
endstream
endobj
351 0 obj
<>stream
endstream
endobj
352 0 obj
<>stream
endstream
endobj
353 0 obj
<>stream
endstream
endobj
354 0 obj
<>stream
endstream
endobj
355 0 obj
<>stream
BT
66.402 0 Td
(31)Tj
ET
Q
endstream
endobj
356 0 obj
<>/XObject<>>>/CropBox[0 0 612 792]/MediaBox[0 0 612 792]/Parent 12 0 R/Annots 358 0 R/Contents 359 0 R/TrimBox[0 0 612 792]>>
endobj
357 0 obj
<>stream
xxֆRF[Znnݽ.Th{[w7܋ qO$@А!D'a9!@Y2[jݸqcb̳vZƳZنwXmffU,5++%%%kkk͂YB:,{%[la+W^TT=@*
*
*
a@EEEZZZ~.>ڏ?8..H_~a~طo_( xA.γ:,,:.;o/^p4A=c^xgy?cǎwx8RWW7tk橧ZpY7p_?qDY-s=@tNXVV6{^xy8K._u^*
*
*
*p+ `ڵ+ᨣr_52;C /X;
1'pBΝ8`[oqƌ+*Yv~Wڷ3;M4͚5mn3sǿ8g3{a`MDFFzpBapf͠Uγ7|YE]hCH[^ Η_~YPP`U@PTU@PTU@PTU@8L6^;p|7C9rO?r-#<999&|g\