Article

Adduri, R.S.R. and George, S.A. and Padmavathi, K. and Bashyam, M.D. (2020) SMARCD1 is a transcriptional target of specific non‐hotspot mutant p53 forms. Journal of Cellular Physiology, 235 (5). pp. 4559-4570. ISSN 0021-9541

Bashyam, M.D. and Srinivas, A. and Pratyusha, B. and Ashmala, N. and Sara , A.G. (2019) The Yin and Yang of cancer genes. Gene, 704. pp. 121-133. ISSN 0378-1119

Bashyam, M.D. and Srinivas, A. and Pratyusha, B. (2019) Taming the Master: SWI/SNF chromatin remodeller as a therapeutic target in cancer. Current Science , 116 (10). pp. 1653-1665. ISSN 0011-3891

Clarke, L. and Adduri, R.S.R. and Smyth, P. and Quinn, F. and Jeffers, M. and Dunne, B. and O'Leary, J. and McKiernan, S. and Vandenberghe, E. and Pyne, S. and Bashyam, M.D. and Sheils, O. and Flavin, R. (2018) Potentially important miRNAs in enteropathy-associated T-cell lymphoma pathogenesis: A pilot study. Leukemia Research Reports, 10. pp. 52-54. ISSN 2213-0489

Kumar, Raju and Kotapalli, V. and Naz, Ashmala and Gowrishankar, S. and Rao, S. and Pollack, J.R. and Bashyam, M.D. (2018) XPNPEP3 is a novel transcriptional target of canonical Wnt/β-catenin signalling. Genes, Chromosomes and Cancer, 57 (6). pp. 304-310. ISSN 1045-2257

Kumar, Raju and Raman, R. and Kotapalli, V. and Gowrishankar, S. and Pyne, S. and Pollack, J.R. and Bashyam, M.D. (2018) Ca2+/nuclear factor of activated T cells signaling is enriched in early-onset rectal tumors devoid of canonical Wnt activation. Journal of Molecular Medicine, 96 (2). pp. 135-146. ISSN 0946-2716

Kumar, Raju and Bashyam, M.D. (2017) Multiple oncogenic roles of nuclear β-catenin. Journal of Biosciences, 42 (4). pp. 695-707. ISSN 0250-5991

Chaudhary, A.K. and Mohapatra, R. and Nagarajaram, H.A. and Ranganath, P. and Dalal, Ashwin and Dutta, A. and Danda, S. and Girisha, K.M. and Bashyam, M.D. (2017) The novelEDARp.L397H missense mutation causes autosomal dominant hypohidrotic ectodermal dysplasia. Journal of the European Academy of Dermatology and Venereology, 31 (1). e17-e20. ISSN 0926-9959

Chaudhary, A.K. and Sankar, V.H. and Bashyam, M.D. (2016) A novel large deletion that encompasses EDA and the downstream gene AWAT2 causes X-linked hypohidrotic/anhidrotic ectodermal dysplasia. Journal of Dermatological Science, 84 (1). pp. 105-107. ISSN 0923-1811

Chaudhary, A.K. and Girisha, K.M. and Bashyam, M.D. (2016) A novel EDARADD5′-splice site mutation resulting in activation of two alternate cryptic 5′-splice sites causes autosomal recessive Hypohidrotic Ectodermal Dysplasia. American Journal of Medical Genetics Part A, 170 (6). pp. 1639-1641. ISSN 1552-4825

Bashyam, M.D. and Kotapalli, V. and Raman, R. and Chaudhary, A.K. and Yadav, B.K. and Gowrishankar, S. and Uppin, S.G. and Kongara, R. and Sastry, R.A. and Mohana Vamsy, C. and Patnaik, S. and Rao, S. and Dsouza, S. and Desai, D.C. and Tester, A. (2015) Evidence for presence of mismatch repair gene expression positive Lynch syndrome cases in India. Molecular Carcinogenesis, 54 (12). pp. 1807-1814. ISSN 0899-1987

Delma, C.R. and Somasundaram, S.T. and Srinivasan, G.P. and Khursheed, M. and Bashyam, M.D. and Aravindan, N. (2015) Fucoidan from Turbinaria conoides: a multifaceted 'deliverable' to combat pancreatic cancer progression. International Journal of Biological Macromolecules, 74. pp. 447-57. ISSN 1879-0003

Bashyam, M.D. and Chaudhary, A.K. and Kiran, M. and Reddy, V. and Nagarajaram, H.A. and Dalal, Ashwin and Bashyam, L. and Sun, D. and Gupta, A. and Gupta, N. and Kabra, M. and Puri, R.D. and Radha Rama Devi, A. and Kapoor, S. and Danda, S. (2014) Molecular analyses of novel ASAH1 mutations causing Farber lipogranulomatosis: analyses of exonic splicing enhancer inactivating mutation. Clinical Genetics, 86 (6). pp. 530-538. ISSN 1399-0004

Adduri, R.S. and Viswakalyan, K. and Rajender, K.K. and Gowrishankar, S. and Pyne, S. and Srinivasulu, M. and Rao, S. and Uppin, S.G. and Ali, M.M. and Nayak, U.K. and Dhagam, S. and Mohana Vamsy, C. and Bashyam, M.D. (2014) Clinical and molecular genetic analysis of squamous cell carcinoma of the oral tongue. Cancer Research, 74 (19 Sup). p. 1883. ISSN 0008-5472

Bashyam, M.D. and Viswakalyan, K. and Raman, R. and Yadav, B.K. and Chaudhary, A.K. and Gowrishankar, S. and Uppin, S.G. and Kongara, R. and Sastry, R.A. and Mohana Vamsy, C. and Patnaik, S. and Dsouza, S. and Desai, D.C. and Ashavaid, T. (2014) Identification of MMR gene exonic rearrangements in suspected Lynch syndrome tumors without loss of MMR expression. Cancer Research, 74 (19 Sup). p. 1285. ISSN 0008-5472

Adduri, R.S.R. and Kotapalli, V. and Gupta, N.A. and Gowrishankar, S. and Srinivasulu, M. and Ali, M. and Rao, S. and Uppin, S.G. and Nayak, U.K. and Dhagam, S. and Mohana Vamsy, C. and Bashyam, M.D. (2014) P53 nuclear stabilization is associated with FHIT loss and younger age of onset in squamous cell carcinoma of oral tongue. BMC Clinical Pathology, 14 (1). p. 37. ISSN 1472-6890

Raman, R. and Kongara, R. and Kotapalli, V. and Gowrishankar, S. and Sastry, R.A. and Nagari, B. and Bashyam, M.D. (2014) Pathological stage significantly predicts survival in colorectal cancer patients: a study from two tertiary care centers in India. Colorectal Cancer, 3 (3). pp. 265-275. ISSN 1758-194X

Khursheed, M. and Bashyam, M.D. (2014) Apico-basal polarity complex and cancer. Journal of Biosciences, 39 (1). pp. 145-55. ISSN 0973-7138

Bashyam, M.D. and Chaudhary, A.K. and Kiran, M. and Nagarajaram, H.A. and Radha Rama Devi, A. and Ranganath, P. and Dalal, Ashwin and Bashyam, L. and Gupta, N. and Kabra, M. and Muranjan, M. and Puri, R.D. and Verma, I.C. and Nampoothiri, S. and Kadandale, J.S. (2014) Splice, insertion-deletion and nonsense mutations that perturb the phenylalanine hydroxylase transcript cause phenylketonuria in India. Journal of Cellular Biochemistry, 115 (3). pp. 566-74. ISSN 1097-4644

Raman, R. and Kotapalli, V. and Adduri, R.S.R. and Gowrishankar, S. and Bashyam, L. and Chaudhary, A. and Mohana Vamsy, C. and Patnaik, S. and Srinivasulu, M. and Sastry, R.A. and Rao, S. and Vasala, A. and Kalidindi, N.R. and Pollack, J.R. and Murthy, S. and Bashyam, M.D. (2014) Evidence for possible non-canonical pathway(s) driven early-onset colorectal cancer in India. Molecular Carcinogenesis, 53 (S1). E181-E186. ISSN 1098-2744

Adduri, R.S.R. and Katamoni, R. and Pandilla, R. and Madana, S.N. and Paripati, A.K. and Kotapalli, V. and Bashyam, M.D. (2014) TP53 Pro72 allele is enriched in oral tongue cancer and frequently mutated in esophageal cancer in India. PloS one, 9 (12). e114002. ISSN 1932-6203

Raman, R. and Kotapalli, V. and Mohana Vamsy, C. and Patnaik, S.C. and Srinivasulu, M. and Bashyam, M.D. (2014) A positive family history of cancer or lifestyle factors may not explain the high incidence of early-onset colorectal cancer in India. Colorectal Cancer, 3 (5). pp. 409-416. ISSN 1758-194X

Ramaswamy, P. and Viswakalyan, K. and Gowrishankar, S. and Mohana Vamsy, C. and Patnaik, S. and Uppin, S.G. and Rao, S. and Raju, K.N. and Sastry, R.A. and Sundaram, C. and Srinivasulu, M. and Anjayneyulu, V. and Bashyam, M.D. (2013) Distinct genetic aberrations in oesophageal adeno and squamous carcinoma. European Journal of Clinical Investigation, 43 (12). pp. 1233-1239. ISSN 0014-2972

Bashyam, M.D. and Raman, R. (2013) Molecular Origins of Colon and Rectal Cancer: Not a Wnt–Wnt Situation. Current Colorectal Cancer Reports, 9 (4). pp. 365-371. ISSN 1556-3790

Khursheed, M. and Kolla, J.N. and Kotapalli, V. and Gupta, N. and Gowrishankar, S. and Uppin, S.G. and Sastry, R.A. and Koganti, S. and Sundaram, C. and Pollack, J.R. and Bashyam, M.D. (2013) ARID1B, a member of the human SWI/SNF chromatin remodeling complex, exhibits tumour-suppressor activities in pancreatic cancer cell lines. British Journal of Cancer, 108 (10). pp. 2056-2062. ISSN 0007-0920

Sridhar, K. and Shinde, S.R. and Raman, R. and Viswakalyan, K. and Bashyam, M.D. and Gowrishankar, S. and Mohana Vamsy, C. and Pattnaik, S. and Rao, S. and Sastry, R.A. and Srinivasulu, M. and Chen, J. and Subba Reddy, Maddika (2013) PNUTS Functions as a Proto-Oncogene by Sequestering PTEN. Cancer Research, 73 (1). pp. 205-214. ISSN 0008-5472

Bashyam, M.D. and Chaudhary, A.K. and Sinha, M. and Nagarajaram, H.A. and Radha Rama Devi, A. and Bashyam, L. and Reddy, E.C. and Dalal, Ashwin (2012) Molecular genetic analysis of MSUD from India reveals mutations causing altered protein truncation affecting the C-termini of E1α and E1β. Journal of Cellular Biochemistry, 113 (10). pp. 3122-3132. ISSN 0730-2312

Muranjan, M. and Agarwal, Shruti and Lahiri, Keya and Bashyam, M.D. (2012) Novel Biochemical Abnormalities and Genotype in Farber Disease. Indian Pediatrics, 49 (4). pp. 320-322. ISSN 0019-6061

Bashyam, M.D. and Chaudhary, A.K. and Reddy, E.C. and Reddy, V. and Acharya, V. and Nagarajaram, H.A. and Radha Rama Devi, A. and Bashyam, L. and Dalal, Ashwin and Gupta, N. and Kabra, M. and Agarwal, Meenal and Phadke, S.R. and Tainwala, R. and Kumar, R. and Hariharan, S.V. (2012) A founder ectodysplasin A receptor (EDAR) mutation results in a high frequency of the autosomal recessive form of hypohidrotic ectodermal dysplasia in India. British Journal of Dermatology, 166 (4). pp. 819-829. ISSN 0007-0963

Shain, A.H. and Giacomini, C.P. and Matsukuma, K. and Karikari, C.A. and Bashyam, M.D. and Hidalgo, M. and Maitra, A. and Pollack, J.R. (2012) Convergent structural alterations define SWItch/Sucrose NonFermentable (SWI/SNF) chromatin remodeler as a central tumor suppressive complex in pancreatic cancer. Proceedings of the National Academy of Sciences, 109 (5). E252-E259. ISSN 0027-8424

Bashyam, M.D. and Purushotham, G. and Chaudhary, A.K. and Rao, K.M. and Acharya, V. and Mohammad, T.A.S. and Nagarajaram, H.A. and Hariram, V. and Narasimhan, C. (2012) A low prevalence of MYH7/MYBPC3 mutations among Familial Hypertrophic Cardiomyopathy patients in India. Molecular and Cellular Biochemistry, 360 (1-2). pp. 373-382. ISSN 0300-8177

Bashyam, M.D. and Chaudhary, A.K. and Bhat, V. (2012) The IVS-II-837 (T>G) Appears to be a Relatively Common 'Rare' β-Globin Gene Mutation in β-Thalassemia Patients in Karnataka State, South India. Hemoglobin, 36 (5). pp. 497-503. ISSN 0363-0269

Kwei, K.A. and Shain, A.H. and Bair, R. and Montgomery, K. and Karikari, C.A. and van de Rijn, M. and Hidalgo, M. and Maitra, A. and Bashyam, M.D. and Pollack, J.R. (2011) SMURF1 Amplification Promotes Invasiveness in Pancreatic Cancer. PLoS ONE, 6 (8). e23924. ISSN 1932-6203

Angalena, R. and Prabitha, K.N. and Chaudhary, A.K. and Bashyam, M.D. and Jain, S. and Dalal, Ashwin (2010) A novel homozygous point mutation at codon 82 (HBB:c.247A > T) in the beta-globin gene leads to thalassemia major. International Journal of Laboratory Hematology, 32 (5). pp. 548-549. ISSN 1751-5521

Nirmala, Y. and Bashyam, M.D. (2010) Hormonal regulation of gluconeogenic gene transcription in the liver. Journal of Biosciences, 35 (3). pp. 473-484. ISSN 0973-7138

Bashyam, M.D. and Chaudhary, A.K. and Reddy, E.C. and Radha Rama Devi, A. and Savithri, G.R. and Ratheesh, R. and Bashyam, L. and Mahesh, E. and Sen, D. and Puri, R.D. and Verma, I.C. and Nampoothiri, S. and Vaidyanathan, S. and Chandrashekar, M.D. and Prameela, K. (2010) Phenylalanine hydroxylase gene mutations in phenylketonuria patients from India: Identification of novel mutations that affect PAH RNA. Molecular Genetics and Metabolism, 100 (1). pp. 96-99. ISSN 1096-7192

Purushotham, G. and Madhumohan, K. and Anwaruddin, M. and Nagarajaram, H.A. and Hariram, V. and Narasimhan, C. and Bashyam, M.D. (2010) The MYH7 p.R787H mutation causes hypertrophic cardiomyopathy in two unrelated families. Experimental and clinical cardiology, 15 (1). e1-4. ISSN 1918-1515

Bashyam, M.D. (2009) Nonsense-mediated decay: linking a basic cellular process to human disease. Expert Review of Molecular Diagnostics, 9 (4). pp. 299-303. ISSN 1744-8352

Kumar, M.S. and Ramachandran, A. and Hasnain, S.E. and Bashyam, M.D. (2009) Octamer and heat shock elements regulate transcription from the AcMNPV polyhedrin gene promoter. Archives of Virology, 154 (3). pp. 445-456. ISSN 0304-8608

Bashyam, M.D. (2009) Studies on nonsense mediated decay reveal novel therapeutic options for genetic diseases. Recent Patents on DNA & Gene Sequences, 3 (1). pp. 7-15. ISSN 2212-3431

Frankel, W.N. and Bashyam, M.D. and Kwei, K.A. and Kao, J. and Ratheesh, R. and Reddy, E.C. and Kim, Y.H. and Montgomery, K. and Giacomini, C.P. and Choi, Y.-L. and Chatterjee, Sreejata and Karikari, C.A. and Salari, K. and Wang, P. and Hernandez-Boussard, T. and Gowrishankar, S. and van de Rijn, M. and Maitra, A. and Pollack, J.R. (2008) Genomic Profiling Identifies GATA6 as a Candidate Oncogene Amplified in Pancreatobiliary Cancer. PLoS Genetics, 4 (5). e1000081. ISSN 1553-7404

Radha Rama Devi, A. and Reddy, E.C. and Ranjan, S. and Bashyam, M.D. (2008) Molecular genetic analysis of patients from India with hypohidrotic ectodermal dysplasia reveals novel mutations in the EDA and EDAR genes. British Journal of Dermatology, 158 (1). pp. 163-167. ISSN 0007-0963

Bashyam, M.D. and Savithri, G.R. and Gopikrishna, M. and Narasimhan, C. (2007) A p.R870H mutation in the beta-cardiac myosin heavy chain 7 gene causes familial hypertrophic cardiomyopathy in several members of an Indian family. Canadian Journal of Cardiology, 23 (10). pp. 788-790. ISSN 0828-282X

Radha Rama Devi, A. and Gopikrishna, M. and Ratheesh, R. and Savithri, G.R. and Gowrishankar, S. and Bashyam, M.D. (2006) Farber lipogranulomatosis: clinical and molecular genetic analysis reveals a novel mutation in an Indian family. Journal of Human Genetics, 51 (9). pp. 811-814. ISSN 1434-5161

Bashyam, M.D. and Bair, R. and Kim, Y.H. and Wang, P. and Hernandez-Boussard, T. and Karikari, C.A. and Tibshirani, R. and Maitra, A. and Pollack, J.R. (2005) Array-Based Comparative Genomic Hybridization Identifies Localized DNA Amplifications and Homozygous Deletions in Pancreatic Cancer. Neoplasia, 7 (6). pp. 556-562. ISSN 1476-5586

Bashyam, M.D. and Hasnain, S.E. (2004) The extracytoplasmic function sigma factors: role in bacterial pathogenesis. Infection, Genetics and Evolution, 4 (4). pp. 301-308. ISSN 1567-1348

Bashyam, M.D. and Bashyam, L. and Savithri, G.R. and Gopikrishna, M. and Sangal, V. and Radha Rama Devi, A. (2004) Molecular genetic analyses of beta-thalassemia in South India reveals rare mutations in the beta-globin gene. Journal of Human Genetics, 49 (8). pp. 408-413. ISSN 1434-5161

Viswanathan, P. and Venkaiah, B. and Kumar, M.S. and Rasheedi, S. and Vrati, S. and Bashyam, M.D. and Hasnain, S.E. (2003) The Homologous Region Sequence (hr1) of Autographa californica Multinucleocapsid Polyhedrosis Virus Can Enhance Transcription from Non-baculoviral Promoters in Mammalian Cells. Journal of Biological Chemistry, 278 (52). pp. 52564-52571. ISSN 0021-9258

Bashyam, M.D. (2003) Prokaryotic Genomics (Michel Blot ed.). Current Science, 84 (10). pp. 1366-1367. ISSN 0011-3891

Bashyam, M.D. and Mukhopadhyay, Sangita (2003) [Book Review] 1. Status of Tuberculosis in India 2. Trends in Malaria and Vaccine Research: The Current Indian Scenario. Infection, Genetics and Evolution, 3 (1). pp. 75-77. ISSN 15671348

Bashyam, M.D. and Savithri, G.R. and Kumar, M.S. and Narasimhan, C. and Pratibha, N. (2003) Molecular genetics of familial hypertrophic cardiomyopathy (FHC). Journal of Human Genetics, 48 (2). pp. 55-64. ISSN 1434-5161

Bashyam, M.D. and Hasnain, S.E. (2003) The human genome sequence: impact on health care. Indian Journal of Medical Research, 117. pp. 43-65. ISSN 0971-5916

Bashyam, M.D. (2002) Microarrays for the Neurosciences -- An Essential Guide. Current Science, 83 (5). pp. 649-650. ISSN 0011-3891

Bashyam, M.D. (2002) Understanding cancer metastasis. Cancer, 94 (6). pp. 1821-1829. ISSN 0008-543X

Ramachandran, A. and Bashyam, M.D. and Viswanathan, P. and Ghosh, S. and Kumar, M.S. and Hasnain, S.E. (2001) The bountiful and baffling baculovirus: The story of polyhedrin transcription. Current Science, 81 (8). pp. 998-1010. ISSN 0011-3891

Ramachandran, A. and Jain, A. and Arora, P. and Bashyam, M.D. and Chatterjee, U. and Ghosh, S. and Parnaik, V.K. and Hasnain, S.E. (2001) Novel Sp Family-like Transcription Factors Are Present in Adult Insect Cells and Are Involved in Transcription from the Polyhedrin Gene Initiator Promoter. Journal of Biological Chemistry, 276 (26). pp. 23440-23449. ISSN 0021-9258

Bashyam, M.D. and Ghosh, S. and Ramachandran, A. and Viswanathan, P. and Hasnain, S.E. (2000) Multiple regulatory circuits for transcription from the polyhedrin gene promoter of the Autographa californica multiple nucleocapsid nuclear polyhedrosis virus. Proceedings of the Indian Natlonal Science Academy (PINSA), 66B (2-3). pp. 83-95. ISSN 0369-8211

Book Section

Bashyam, M.D. and Hasnain, S.E. (2007) Array-Based Comparative Genomic Hybridization. Applications in Cancer and Tuberculosis. In: Bioarrays: From Basics to Diagnostics. Humana Press Inc, Totowa, N.J., USA, pp. 107-121. ISBN 978-1-58829-476-0