Article

Acharya, V. and Nagarajaram, H.A. (2012) Hansa: An automated method for discriminating disease and neutral human nsSNPs. Human Mutation, 33 (2). pp. 332-337. ISSN 1059-7794

Akhter, Y. and Ehebauer, M.T. and Mukhopadhyay, Sangita and Hasnain, S.E. (2012) The PE/PPE multigene family codes for virulence factors and is a possible source of mycobacterial antigenic variation: Perhaps more? Biochimie, 94 (1). pp. 110-116. ISSN 0300-9084

Ali, J. and Shashi Rekha, T. and Ranjan, Akash (2012) The parasite specific substitution matrices improve the annotation of apicomplexan proteins. BMC genomics, 13 (Suppl ). S19. ISSN 1471-2164

Almeida, R.P.P. and Killiny, N. and Newman, K.L. and Chatterjee, Subhadeep and Ionescu, M. and Lindow, S.E. (2012) Contribution ofrpfBto Cell-to-Cell Signal Synthesis, Virulence, and Vector Transmission ofXylella fastidiosa. Molecular Plant-Microbe Interactions, 25 (4). pp. 453-462. ISSN 0894-0282

Angalena, R. and Aggarwal, Shagun and Phadke, S.R. and Dalal, Ashwin (2012) Compound heterozygote condition in beta thalassemia major due to a novel single nucleotide deletion (-T) at codon 69 in association with IVS 1-5 (G>C) mutation. International Journal of Laboratory Hematology, 34 (4). e7-e9. ISSN 1751-5521

Arunkumar, K.P. and Sahu, A.K. and Mohanty, A.R. and Awasthi, A.K. and Pradeep, A.R. and Urs, S.R. and Nagaraju, J. (2012) Genetic Diversity and Population Structure of Indian Golden Silkmoth (Antheraea assama). PLoS ONE, 7 (8). e43716. ISSN 1932-6203

Banerjee, R. and Nath, S. and Ranjan, Amitabh and Khamrui, S. and Pani, B. and Sen, Ranjan and Sen, Udayaditya (2012) The First Structure of Polarity Suppression Protein, Psu from Enterobacteria Phage P4, Reveals a Novel Fold and a Knotted Dimer. Journal of Biological Chemistry, 287 (53). pp. 44667-44675. ISSN 0021-9258

Bashyam, M.D. and Chaudhary, A.K. and Bhat, V. (2012) The IVS-II-837 (T>G) Appears to be a Relatively Common 'Rare' β-Globin Gene Mutation in β-Thalassemia Patients in Karnataka State, South India. Hemoglobin, 36 (5). pp. 497-503. ISSN 0363-0269

Bashyam, M.D. and Chaudhary, A.K. and Reddy, E.C. and Reddy, V. and Acharya, V. and Nagarajaram, H.A. and Radha Rama Devi, A. and Bashyam, L. and Dalal, Ashwin and Gupta, N. and Kabra, M. and Agarwal, Meenal and Phadke, S.R. and Tainwala, R. and Kumar, R. and Hariharan, S.V. (2012) A founder ectodysplasin A receptor (EDAR) mutation results in a high frequency of the autosomal recessive form of hypohidrotic ectodermal dysplasia in India. British Journal of Dermatology, 166 (4). pp. 819-829. ISSN 0007-0963

Bashyam, M.D. and Chaudhary, A.K. and Sinha, M. and Nagarajaram, H.A. and Radha Rama Devi, A. and Bashyam, L. and Reddy, E.C. and Dalal, Ashwin (2012) Molecular genetic analysis of MSUD from India reveals mutations causing altered protein truncation affecting the C-termini of E1α and E1β. Journal of Cellular Biochemistry, 113 (10). pp. 3122-3132. ISSN 0730-2312

Bashyam, M.D. and Purushotham, G. and Chaudhary, A.K. and Rao, K.M. and Acharya, V. and Mohammad, T.A.S. and Nagarajaram, H.A. and Hariram, V. and Narasimhan, C. (2012) A low prevalence of MYH7/MYBPC3 mutations among Familial Hypertrophic Cardiomyopathy patients in India. Molecular and Cellular Biochemistry, 360 (1-2). pp. 373-382. ISSN 0300-8177

Bhat, K.H. and Bhat, A. and Kumar, S. and Sharma, P. and Mukhopadhyay, Sangita (2012) Role of PPE18 Protein in Intracellular Survival and Pathogenicity of Mycobacterium tuberculosis in Mice. PLoS ONE, 7 (12). e52601. ISSN 1932-6203

Bhat, K.H. and Chaitanya, C.K. and Parveen, N. and Varman, R. and Ghosh, S. and Mukhopadhyay, Sangita (2012) Proline-Proline-Glutamic Acid (PPE) Protein Rv1168c of Mycobacterium tuberculosis Augments Transcription from HIV-1 Long Terminal Repeat Promoter. Journal of Biological Chemistry, 287 (20). pp. 16930-16946. ISSN 0021-9258

Dalal, Ashwin and Bhavani, G.S. and Padma Priya, T. and Bierhals, T. and Nandineni, M.R. and Danda, S.R. and Danda, D. and Shah, H. and Vijayan, S. and Gowrishankar, K. and Phadke, S.R. and Bidchol, A.M. and Rao, A.P. and Nampoothiri, S. and Kutsche, K. and Girisha, K.M. (2012) Analysis of theWISP3gene in Indian families with progressive pseudorheumatoid dysplasia. American Journal of Medical Genetics Part A, 158A (11). pp. 2820-2828. ISSN 1552-4825

Dutta, Usha and Vijaya Kumar, P. and Dalal, Ashwin (2012) Molecular Cytogenetic Characterization of a Non-Robertsonian Dicentric Chromosome 14;19 Identified in a Girl with Short Stature and Amenorrhea. Case Reports in Genetics, 2012. ID 212065. ISSN 2090-6544

Dutta, Usha and Vijaya Kumar, P. and Goud, Ch.V. and Dalal, Ashwin (2012) Mosaic Down syndrome with a marker: Molecular cytogenetic characterization of the marker chromosome. Gene, 495 (2). pp. 199-204. ISSN 0378-1119

Dutta, Usha and Vijaya Kumar, P. and Dalal, Ashwin (2012) Molecular and cytogenetic characterization of two patients with recurrent miscarriages and X-autosome translocation. Journal of Research in Medical sciences, 17 (6). pp. 572-4. ISSN 1735-1995

Flatt, T. and Singh, Y.T. and Mazumdar-Leighton, S. and Saikia, M. and Pant, P. and Kashung, S. and Neog, K. and Chakravorty, R. and Nair, S. and Nagaraju, J. and Babu, C.R. (2012) Genetic Variation within Native Populations of Endemic Silkmoth Antheraea assamensis (Helfer) from Northeast India Indicates Need for In Situ Conservation. PLoS ONE, 7 (11). e49972. ISSN 1932-6203

Gowrishankar, J. (2012) Public funding for research projects: roles of experts and finance officials in decision-making. Current Science , 102 (11). p. 1499. ISSN 0011-3891

Hegde, S.R. and Rajasingh, H. and Das, C. and Mande, S.S. and Mande, S.C. (2012) Understanding Communication Signals during Mycobacterial Latency through Predicted Genome-Wide Protein Interactions and Boolean Modeling. PLoS ONE, 7 (3). e33893. ISSN 1932-6203

Kasbekar, D.P. (2012) The Sad paradox: mutations with dominant and recessive phenotypes. Journal of Biosciences, 37 (6). pp. 933-936. ISSN 0973-7138

Kumar, P. and Nagarajaram, H.A. (2012) A Study on Mutational Dynamics of Simple Sequence Repeats in Relation to Mismatch Repair System in Prokaryotic Genomes. Journal of Molecular Evolution, 74 (3-4). pp. 127-139. ISSN 0022-2844

Kumar, Ravindra and Panigrahi, I. and Dalal, Ashwin and Agarwal, Sarita (2012) Sickle Cell Anemia—Molecular Diagnosis and Prenatal Counseling: SGPGI Experience. Indian Journal of Pediatrics, 79 (1). pp. 68-74. ISSN 0019-5456

Mahali, S.K. and Manna, S.K. (2012) Beta-d-glucoside protects against advanced glycation end products (AGEs)-mediated diabetic responses by suppressing ERK and inducing PPAR gamma DNA binding. Biochemical Pharmacology, 84 (12). pp. 1681-1690. ISSN 0006-2952

Manna, S.K. (2012) Double-edged sword effect of biochanin to inhibit nuclear factor kappaB: Suppression of serine/threonine and tyrosine kinases. Biochemical Pharmacology, 83 (10). pp. 1383-1392. ISSN 0006-2952

Marbaniang, C.N. and Gowrishankar, J. (2012) Transcriptional Cross-Regulation between Gram-Negative and Gram-Positive Bacteria, Demonstrated Using ArgP-argO of Escherichia coli and LysG-lysE of Corynebacterium glutamicum. Journal of Bacteriology, 194 (20). pp. 5657-5666. ISSN 0021-9193

Mukhopadhyay, Sangita and Nair, S. and Ghosh, S. (2012) Pathogenesis in tuberculosis: transcriptomic approaches to unraveling virulence mechanisms and finding new drug targets. FEMS Microbiology Reviews, 36 (2). pp. 463-485. ISSN 1574-6976

Muley, V.Y. and Ranjan, Akash (2012) Effect of Reference Genome Selection on the Performance of Computational Methods for Genome-Wide Protein-Protein Interaction Prediction. PLoS ONE, 7 (7). e42057. ISSN 1932-6203

Muranjan, M. and Agarwal, Shruti and Lahiri, Keya and Bashyam, M.D. (2012) Novel Biochemical Abnormalities and Genotype in Farber Disease. Indian Pediatrics, 49 (4). pp. 320-322. ISSN 0019-6061

Muteeb, G. and Dey, D. and Mishra, S. and Sen, Ranjan (2012) A multipronged strategy of an anti-terminator protein to overcome Rho-dependent transcription termination. Nucleic Acids Research, 40 (22). pp. 11213-11228. ISSN 0305-1048

Padma Priya, T. and Dalal, Ashwin (2012) Tuberous Sclerosis: Diagnosis and Prenatal Diagnosis by MLPA. The Indian Journal of Pediatrics, 79 (10). pp. 1366-1369. ISSN 0019-5456

Patil, S.J. and Bhat, V. and Dalal, Ashwin and Santosh, J.S. (2012) Confirmation of the Zechi-Ceide syndrome. American Journal of Medical Genetics Part A, 158A (6). pp. 1467-1471. ISSN 15524825

Patil, S.J. and Rajitha, Ponnala and Shah, S. and Dalal, Ashwin (2012) Mosaic Trisomy 9 Presenting with Congenital Heart Disease, Facial Dysmorphism and Pigmentary Skin Lesions: Intricate Issues of Genetic Counseling. The Indian Journal of Pediatrics, 79 (6). pp. 806-809. ISSN 0019-5456

Pradhan, B.B. and Ranjan, M. and Chatterjee, Subhadeep (2012) XadM, a Novel Adhesin ofXanthomonas oryzaepv.oryzae, Exhibits Similarity to Rhs Family Proteins and Is Required for Optimum Attachment, Biofilm Formation, and Virulence. Molecular Plant-Microbe Interactions, 25 (9). pp. 1157-1170. ISSN 0894-0282

Rai, M.N. and Sriram, B. and Neelima, G. and Lakshmi, D. and Kaur, Rupinder (2012) Functional Genomic Analysis of Candida glabrata-Macrophage Interaction: Role of Chromatin Remodeling in Virulence. PLoS Pathogens, 8 (8). e1002863. ISSN 1553-7374

Rai, Rikky and Ranjan, M. and Pradhan, B.B. and Chatterjee, Subhadeep (2012) Atypical Regulation of Virulence-Associated Functions by a Diffusible Signal Factor inXanthomonas oryzaepv.oryzae. Molecular Plant-Microbe Interactions, 25 (6). pp. 789-801. ISSN 0894-0282

Rajitha, Ponnala and Ranganath, P. and Dutta, Usha and Pidugu, V.K. and Dalal, Ashwin (2012) Phenotypic and Molecular Characterization of Partial Trisomy 2q Resulting from Insertion-Duplication in Chromosome 18q: A Case Report and Review of Literature. Cytogenetic and Genome Research, 136 (3). pp. 229-234. ISSN 1424-8581

Ramakrishna, Gayatri and Anwar, T. and Rajendra Kumar, A. and Chatterjee, Nirupama and Shashi Kiran, and Singh, Sapna (2012) Role of cellular senescence in hepatic wound healing and carcinogenesis. European Journal of Cell Biology, 91 (10). pp. 739-747. ISSN 0171-9335

Ramasarma, T. (2012) Emergence of Oxyl Radicals as Selective Oxidants. Indian Journal of Biochemistry and Biophysics, 49 (5). pp. 295-305. ISSN 0301-1208

Ramasarma, T. (2012) In praise of H2O2, the versatile ROS, and its vanadium complexes. Toxicology Mechanisms and Methods, 22 (5). pp. 336-346. ISSN 1537-6516

Ranganath, P. and Pradhan, M. (2012) Complete Pentalogy of Cantrell with craniorachischisis: a case report. Journal of Prenatal Medicine, 6 (1). pp. 10-2. ISSN 1971-3290

Shain, A.H. and Giacomini, C.P. and Matsukuma, K. and Karikari, C.A. and Bashyam, M.D. and Hidalgo, M. and Maitra, A. and Pollack, J.R. (2012) Convergent structural alterations define SWItch/Sucrose NonFermentable (SWI/SNF) chromatin remodeler as a central tumor suppressive complex in pancreatic cancer. Proceedings of the National Academy of Sciences, 109 (5). E252-E259. ISSN 0027-8424

Shashni, R. and Mishra, S. and Kalayani, B.S. and Sen, Ranjan (2012) Suppression of in vivo Rho-dependent transcription termination defects: evidence for kinetically controlled steps. Microbiology, 158 (Pt_6). pp. 1468-1481. ISSN 1350-0872

Singh, C.P. and Singh, J. and Nagaraju, J. (2012) A Baculovirus-Encoded MicroRNA (miRNA) Suppresses Its Host miRNA Biogenesis by Regulating the Exportin-5 Cofactor Ran. Journal of Virology, 86 (15). pp. 7867-7879. ISSN 0022-538X

Verma, P.K. and Ranganath, P. and Dalal, Ashwin and Phadke, S.R. (2012) Spectrum of lysosomal storage disorders at a medical genetics center in Northern India. Indian Pediatrics, 49 (10). pp. 799-804. ISSN 0019-6061

Vijaya Kumar, P. and Dutta, Usha (2012) Fluorescence in .situ Hybridization: Technology and its application in Molecular Medicine. Journal of Cytology and Genetics, 13 (1-2). pp. 1-8. ISSN 0253-7605

Vineeth, V.S. and Malini, S.S. and Sreenivasa, G. and Dutta, Usha (2012) High incidence of sperm dysfunction in a varicocele infertile man: case report. Asian Pacific Journal of Reproduction, 1 (1). pp. 63-66. ISSN 2305-0500

Xue, Bin and Kamal, M.Z. and Mohammad, T.A.S. and Krishnamoorthy, G. and Rao, N.M. (2012) Role of Active Site Rigidity in Activity: MD Simulation and Fluorescence Study on a Lipase Mutant. PLoS ONE, 7 (4). e35188. ISSN 1932-6203

Yonemura, N. and Tamura, T. and Uchino, K. and Kobayashi, I. and Tatematsu, K. and Iizuka, T. and Sezutsu, H. and Muthulakshmi, M. and Nagaraju, J. and Kusakabe, T. (2012) PhiC31 integrase-mediated cassette exchange in silkworm embryos. Molecular Genetics and Genomics, 287 (9). pp. 731-739. ISSN 1617-4615

Zargar, Z.U. and Tyagi, Shweta (2012) Role of Host Cell Factor-1 in cell cycle regulation. Transcription, 3 (4). pp. 187-192. ISSN 2154-1264

Book Section

Gokul, G. and Khosla, Sanjeev (2012) DNA Methylation and Cancer. In: Epigenetics: Development and Disease. Sub Cellular Biochemistry Vol 61 . Springer, pp. 597-625.

Conference or Workshop Item

Mudunuri, S.B. and Nagarajaram, H.A. and Mishra, P. (2012) Distributional analysis and motif frequencies of compound microsatellite repeats in viral genomes. In: Proceedings of IEEE International Conference on Computing, Electronics & Electrical Technologies (ICCEET)., 21-22 March 2012 , Kumaracoil, India. ISBN: 978-1-4673-0211-1.

Mudunuri, S.B. and Nagarajaram, H.A. and Mishra, P. (2012) In silico survey of distribution and frequency of imperfect microsatellite repeats in viral genomes. In: International Conference on Data Science & Engineering (ICDSE), 18-20 July 2012 , Cochin, India. ISBN: 978-1-4673-2148-8 (pages 31-38).