A

Achary, M.S. and Nagarajaram, H.A. (2008) Comparative docking studies of CYP1b1 and its PCG-associated mutant forms. Journal of Biosciences, 33 (5). pp. 699-713. ISSN 0250-5991

Ahmed, N. and Dobrindt, U. and Hacker, J. and Hasnain, S.E. (2008) Genomic fluidity and pathogenic bacteria: applications in diagnostics, epidemiology and intervention. Nature Reviews Microbiology, 6 (5). pp. 387-394. ISSN 1740-1526

Akhter, T. and Yellaboina, S. and Farhana, A. and Ranjan, Akash and Ahmed, N. and Hasnain, S.E. (2008) Genome scale portrait of cAMP-receptor protein (CRP) regulons in mycobacteria points to their role in pathogenesis. Gene, 407 (1-2). pp. 148-158. ISSN 1932-6203

Akif, M. and Khare, G. and Tyagi, Anil K. and Mande, S.C. and Sardesai, A.A. (2008) Functional Studies of Multiple Thioredoxins from Mycobacterium tuberculosis. Journal of Bacteriology, 190 (21). pp. 7087-7095. ISSN 0021-9193

Aruna, B. and Islam, A. and Ghosh, S. and Singh, A.K. and Vijayalakshmi, M. and Ahmad, F. and Ehtesham, N.Z. (2008) Biophysical Analyses of Human Resistin: Oligomer Formation Suggests Novel Biological Function. Biochemistry, 47 (47). pp. 12457-12466. ISSN 0006-2960

Arunkumar, K.P. and Tomar, A. and Daimon, T. and Shimada, T. and Nagaraju, J. (2008) WildSilkbase: An EST database of wild silkmoths. BMC Genomics, 9 (1). p. 338. ISSN 1471-2164

B

Bannantine, J.P. and Rosu, V. and Zanetti, S. and Rocca, S. and Ahmed, N. and Sechi, L.A. (2008) Antigenic profiles of recombinant proteins from Mycobacterium avium subsp. paratuberculosis in sheep with Johne's disease. Veterinary Immunology and Immunopathology, 122 (1-2). pp. 116-125. ISSN 0165-2427

D

Davis, D. and Farhana, A. and Kumar, S. and Rathore, S.S. and Ghosh, P.C. and Ehtesham, N.Z. and Tyagi, Anil K. and Hasnain, S.E. (2008) Mechanistic Insights into a Novel Exporter-Importer System of Mycobacterium tuberculosis Unravel Its Role in Trafficking of Iron. PLoS One, 3 (5). e2087. ISSN 1932-6203

Dutta, D. and Chalissery, J. and Sen, Ranjan (2008) Transcription Termination Factor Rho Prefers Catalytically Active Elongation Complexes for Releasing RNA. Journal of Biological Chemistry, 283 (29). pp. 20243-20251. ISSN 0021-9258

F

Frankel, W.N. and Bashyam, M.D. and Kwei, K.A. and Kao, J. and Ratheesh, R. and Reddy, E.C. and Kim, Y.H. and Montgomery, K. and Giacomini, C.P. and Choi, Y.-L. and Chatterjee, Sreejata and Karikari, C.A. and Salari, K. and Wang, P. and Hernandez-Boussard, T. and Gowrishankar, S. and van de Rijn, M. and Maitra, A. and Pollack, J.R. (2008) Genomic Profiling Identifies GATA6 as a Candidate Oncogene Amplified in Pancreatobiliary Cancer. PLoS Genetics, 4 (5). e1000081. ISSN 1553-7404

G

Goyal, K. and Mande, S.C. (2008) Exploiting 3D structural templates for detection of metal-binding sites in protein structures. Proteins: Structure, Function, and Bioinformatics, 70 (4). pp. 1206-1218. ISSN 0887-3585

H

Hall, N. and Ahmed, A. and Victoria, B. and Zuerner, R.L. and Ahmed, N. and Bulach, D.M. and Quinteiro, J. and Hartskeerl, R.A. (2008) Conservation of the S10-spc-α Locus within Otherwise Highly Plastic Genomes Provides Phylogenetic Insight into the Genus Leptospira. PLoS ONE, 3 (7). e2752. ISSN 1932-6203

Hegde, S.R. and Manimaran, P. and Mande, S.C. (2008) Dynamic Changes in Protein Functional Linkage Networks Revealed by Integration with Gene Expression Data. PLoS Computational Biology, 4 (11). e1000237. ISSN 1553-7358

Hussain, M.A. and Naveed, S.A. and Sechi, L.A. and Ranjan, Sarita and Alvi, A. and Ahmed, I. and Ranjan, Akash and Mukhopadhyay, Sangita and Ahmed, N. (2008) Isocitrate Dehydrogenase of Helicobacter pylori Potentially Induces Humoral Immune Response in Subjects with Peptic Ulcer Disease and Gastritis. PLoS ONE, 3 (1). e1481. ISSN 1932-6203

K

Khan, N. and Alam, K. and Mande, S.C. and Valluri, V.L. and Hasnain, S.E. and Mukhopadhyay, Sangita (2008) Mycobacterium tuberculosisheat shock protein 60 modulates immune response to PPD by manipulating the surface expression of TLR2 on macrophages. Cellular Microbiology, 10 (8). pp. 1711-1722. ISSN 1462-5814

Khan, N. and Alam, K. and Nair, S. and Valluri, V.L. and Murthy, K.J.R. and Mukhopadhyay, Sangita (2008) Association of Strong Immune Responses to PPE Protein Rv1168c with Active Tuberculosis. Clinical and Vaccine Immunology, 15 (6). pp. 974-980. ISSN 1556-6811

Kumar, K.P. and Issac, B. and Dodson, E.J. and Turkenburg, J.P. and Mande, S.C. (2008) Crystal Structure of Mycobacterium tuberculosis YefM Antitoxin Reveals that it is Not an Intrinsically Unstructured Protein. Journal of Molecular Biology, 383 (3). pp. 482-493. ISSN 0022-2836

M

Mrinal, N. and Nagaraju, J. (2008) Intron Loss Is Associated with Gain of Function in the Evolution of the Gloverin Family of Antibacterial Genes in Bombyx mori. Journal of Biological Chemistry, 283 (34). pp. 23376-23387. ISSN 0021-9258

N

Naushad, S.M. and Jain, J.M.N. and Krishnaprasad, C. and Radha Rama Devi, A. (2008) Relationship between methionine synthase, methionine synthase reductase genetic polymorphisms and deep vein thrombosis among South Indians. Clinical Chemistry and Laboratory Medicine, 46 (1). pp. 73-79. ISSN 1434-6621

P

Paila, U. and Kondam, R. and Ranjan, Akash (2008) Genome bias influences amino acid choices: analysis of amino acid substitution and re-compilation of substitution matrices exclusive to an AT-biased genome. Nucleic Acids Research, 36 (21). pp. 6664-6675. ISSN 0305-1048

Prabhakara, K. and Bruno, D.L. and Padman, P. and Prasad, Suma and Sudheer Kumar, R. and Slater, H. R. and Radha Rama Devi, A. (2008) Prenatal detection of deletion–duplication of chromosome 3 arising from meiotic recombination of a familial pericentric inversion. Prenatal Diagnosis, 28 (5). pp. 466-468. ISSN 0197-3851

R

Radha Rama Devi, A. and Reddy, E.C. and Ranjan, S. and Bashyam, M.D. (2008) Molecular genetic analysis of patients from India with hypohidrotic ectodermal dysplasia reveals novel mutations in the EDA and EDAR genes. British Journal of Dermatology, 158 (1). pp. 163-167. ISSN 0007-0963

Rajesh, V. and Singamsetti, V.K. and Vidya, S. and Gowrishankar, M. and Elamaran, M. and Tripathi, J. and Radhika, N.B. and Kochar, D. and Ranjan, Akash and Roy, S.K. and Das, A. (2008) Plasmodium falciparum: Genetic polymorphism in apical membrane antigen-1 gene from Indian isolates. Experimental Parasitology, 119 (1). pp. 144-151. ISSN 0014-4894

Rizwan, M. and Alvi, A. and Ahmed, N. (2008) Novel Protein Antigen (JHP940) from the Genomic Plasticity Region of Helicobacter pylori Induces Tumor Necrosis Factor Alpha and Interleukin-8 Secretion by Human Macrophages. Journal of Bacteriology, 190 (3). pp. 1146-1151. ISSN 0021-9193

S

Sechi, L.A. and Paccagnini, D. and Salza, S. and Pacifico, A. and Ahmed, N. and Zanetti, S. (2008) Mycobacterium avium Subspecies paratuberculosis Bacteremia in Type 1 Diabetes Mellitus: An Infectious Trigger? Clinical Infectious Diseases, 46 (1). pp. 148-149. ISSN 1058-4838

Sechi, L.A. and Rosu, V. and Pacifico, A. and Fadda, G. and Ahmed, N. and Zanetti, S. (2008) Humoral Immune Responses of Type 1 Diabetes Patients to Mycobacterium avium subsp. paratuberculosis Lend Support to the Infectious Trigger Hypothesis. Clinical and Vaccine Immunology, 15 (2). pp. 320-326. ISSN 1556-6811

Singh, J. and Nagaraju, J. (2008) In silicoprediction and characterization of microRNAs from red flour beetle (Tribolium castaneum). Insect Molecular Biology, 17 (4). pp. 427-436. ISSN 0962-1075

Sowpati, D.T. and Thiagarajan, D. and Sharma, S.C. and Sultana, H. and John, R. and Surani, A. and Mishra, R.K. and Khosla, Sanjeev (2008) An intronic DNA sequence within the mouse Neuronatin gene exhibits biochemical characteristics of an ICR and acts as a transcriptional activator in Drosophila. Mechanisms of Development, 125 (11-12). pp. 963-973. ISSN 0925-4773

Sridhar, V. and Devi, S.M. and Ahmed, N. and Sritharan, M. (2008) Diagnostic potential of an iron-regulated hemin-binding protein HbpA that is widely conserved in Leptospira interrogans. Infection, Genetics and Evolution, 8 (6). pp. 772-776. ISSN 15671348

Sriramana, K. and Muralidhar, M. and Jakati, R.D. and Nagaraju, J. (2008) Genetic evidence from Indian red jungle fowl corroborates multiple domestication of modern day chicken. BMC Evolutionary Biology, 8 (1). p. 174. ISSN 1471-2148

T

Talwar, G.P. and Ahmed, N. and Saini, V. (2008) The use of the name Mycobacterium w for the leprosy immunotherapeutic bacillus creates confusion with M. tuberculosis-W (Beijing strain): A suggestion. Infection, Genetics and Evolution, 8 (1). pp. 100-101. ISSN 1567-1348

Tundup, S. and Pathak, Niteen and Ramanadham, M. and Mukhopadhyay, Sangita and Murthy, K.J.R. and Ehtesham, N.Z. and Hasnain, S.E. (2008) The Co-Operonic PE25/PPE41 Protein Complex of Mycobacterium tuberculosis Elicits Increased Humoral and Cell Mediated Immune Response. PLoS ONE, 3 (10). e3586. ISSN 1932-6203

V

Vindal, V. and Ashwantha Kumar, E. and Ranjan, Akash (2008) Identification of operator sites within the upstream region of the putative mce2R gene from mycobacteria. FEBS Letters, 582 (7). pp. 1117-1122. ISSN 0014-5793