A

Ali, J. and Uma Devi, P. and Ranjan, Akash (2011) ApicoAlign: an alignment and sequence search tool for apicomplexan proteins. BMC Genomics, 12 (Suppl ). S6. ISSN 1471-2164

Anupama, K. and Krishna Leela, J. and Gowrishankar, J. (2011) Two pathways for RNase E action in Escherichia coli in vivo and bypass of its essentiality in mutants defective for Rho-dependent transcription termination. Molecular Microbiology, 82 (6). pp. 1330-1348. ISSN 0950-382X

Arora, A. and Chandra, N.R. and Das, A. and Gopal, B. and Mande, S.C. and Prakash, B. and Ramachandran, R. and Sankaranarayanan, R. and Sekar, K. and Suguna, K. and Tyagi, Anil K. and Vijayan, M. (2011) Structural biology of Mycobacterium tuberculosis proteins: The Indian efforts. Tuberculosis, 91 (5). pp. 456-468. ISSN 1472-9792

Arunkumar, K.P. and Nagaraju, J. (2011) Drosophila intersex orthologue in the silkworm, Bombyx mori and related species. Genetica, 139 (1). pp. 141-147. ISSN 0016-6707

B

Bairwa, G. and Kaur, Rupinder (2011) A novel role for a glycosylphosphatidylinositol-anchored aspartyl protease, CgYps1, in the regulation of pH homeostasis in Candida glabrata. Molecular Microbiology, 79 (4). pp. 900-913. ISSN 0950-382X

Bentur, J.S. and Sinha, D.K. and Padmavathy, Ch. and Revathy, C. and Muthulakshmi, M. and Nagaraju, J. (2011) Isolation and Characterization of Microsatellite Loci in the Asian Rice Gall Midge (Orseolia oryzae) (Diptera: Cecidomyiidae). International Journal of Molecular Sciences, 12 (12). pp. 755-772. ISSN 1422-0067

Borah, S. and Shivarathri, R. and Kaur, Rupinder (2011) The Rho1 GTPase-activating Protein CgBem2 Is Required for Survival of Azole Stress in Candida glabrata. Journal of Biological Chemistry, 286 (39). pp. 34311-34324. ISSN 0021-9258

Bose, S. and Sakhuja, P. and Lavanaya, B. and Agarwal, A.K. and Kazim, S.N. and Khan, L.A. and Sarin, S.K. and Ramakrishna, Gayatri (2011) Hepatocellular carcinoma with persistent hepatitis B virus infection shows unusual downregulation of Ras expression and differential response to Ras mediated signaling. Journal of Gastroenterology and Hepatology, 26 (1). pp. 135-144. ISSN 0815-9319

C

Chalissery, J. and Muteeb, G. and Kalarickal, N.C. and Shalini, M. and Jisha, V. and Sen, Ranjan (2011) Interaction Surface of the Transcription Terminator Rho Required to Form a Complex with the C-Terminal Domain of the Antiterminator NusG. Journal of Molecular Biology, 405 (1). pp. 49-64. ISSN 0022-2836

Chatterjee, Nirupama and Shashi Kiran, and Ram, B.M. and Islam, N. and Ramasarma, T. and Ramakrishna, Gayatri (2011) Diperoxovanadate can substitute for H2O2 at much lower concentration in inducing features of premature cellular senescence in mouse fibroblasts (NIH3T3). Mechanisms of Ageing and Development, 132 (5). pp. 230-239. ISSN 0047-6374

D

Das, Arghya and Mukhopadhyay, Sangita (2011) The Evil Axis of Obesity, Inflammation and Type-2 Diabetes. Endocrine, Metabolic & Immune Disorders - Drug Targets, 11 (1). pp. 23-31. ISSN 1871-5303

Dutta, Usha and Rajitha, Ponnala and Vijaya Kumar, P. and Dalal, Ashwin (2011) Cytogenetic abnormalities in 1162 couples with recurrent miscarriages in Southern region of India: report and review. Journal of Assisted Reproduction and Genetics, 28 (2). pp. 145-149. ISSN 1058-0468

G

Gunnarsdóttir, E.D. and Nandineni, M.R. and Li, M. and Myles, S. and Gil, D. and Pakendorf, B. and Stoneking, M. (2011) Larger mitochondrial DNA than Y-chromosome differences between matrilocal and patrilocal groups from Sumatra. Nature Communications, 2. p. 228. ISSN 2041-1723

J

Jailkhani, N. and Ravichandran, S. and Hegde, S.R. and Siddiqui, Z. and Mande, S.C. and Rao, K.V.S. (2011) Delineation of key regulatory elements identifies points of vulnerability in the mitogen-activated signaling network. Genome Research, 21 (12). pp. 2067-2081. ISSN 1088-9051

K

Kalyani, B.S. and Muteeb, G. and Qayyum, M.Z. and Sen, Ranjan (2011) Interaction with the Nascent RNA Is a Prerequisite for the Recruitment of Rho to the Transcription Elongation Complex In Vitro. Journal of Molecular Biology, 413 (3). pp. 548-560. ISSN 0022-2836

Khanna, Vivek and Jain, M. and Barthwal, M.K. and Kalita, D. and Boruah, J.J. and Das, S.P. and Islam, N. and Ramasarma, T. and Dikshit, M. (2011) Vasomodulatory effect of novel peroxovanadate compounds on rat aorta: Role of rho kinase and nitric oxide/cGMP pathway. Pharmacological Research, 64 (3). pp. 274-282. ISSN 1043-6618

Kole, L. and Giri, B. and Manna, S.K. and Pal, Biswajit and Ghosh, S. (2011) Biochanin-A, an isoflavon, showed anti-proliferative and anti-inflammatory activities through the inhibition of iNOS expression, p38-MAPK and ATF-2 phosphorylation and blocking NFκB nuclear translocation. European Journal of Pharmacology, 653 (1-3). pp. 8-15. ISSN 0014-2999

Krishnaveni, M. and Sahdev, S. and Hasnain, S.E. (2011) Baculovirus p35 gene is oppositely regulated by P53 and AP-1 like factors in Spodoptera frugiperda. Biochemical and Biophysical Research Communications, 414 (4). pp. 688-693. ISSN 0006-291X

Kumar, C.M.S. and Mande, S.C. (2011) Protein chaperones and non-protein substrates: on substrate promiscuity of GroEL. Current Science , 100 (11). pp. 1646-1653. ISSN 0011-3891

Kumar, P. and Chaitanya, P.S. and Nagarajaram, H.A. (2011) PSSRdb: a relational database of polymorphic simple sequence repeats extracted from prokaryotic genomes. Nucleic Acids Research, 39 (Databa). D601-D605. ISSN 0305-1048

Kwei, K.A. and Shain, A.H. and Bair, R. and Montgomery, K. and Karikari, C.A. and van de Rijn, M. and Hidalgo, M. and Maitra, A. and Bashyam, M.D. and Pollack, J.R. (2011) SMURF1 Amplification Promotes Invasiveness in Pancreatic Cancer. PLoS ONE, 6 (8). e23924. ISSN 1932-6203

L

Li, Yu-Rong and Zou, Hua-Song and Che, Yi-Zhou and Cui, Yi-Ping and Guo, Wei and Zou, Li-Fang and Chatterjee, Subhadeep and Biddle, E.M. and Yang, Ching-Hong and Chen, Gong-You (2011) A Novel Regulatory Role of HrpD6 in Regulatinghrp-hrc-hpaGenes inXanthomonas oryzaepv.oryzicola. Molecular Plant-Microbe Interactions, 24 (9). pp. 1086-1101. ISSN 0894-0282

M

Mahali, S.K. and Raviprakash, N. and Raghavendra, P.B. and Manna, S.K. (2011) Advanced Glycation End Products (AGEs) Induce Apoptosis via a Novel Pathway: INVOLVEMENT OF CA2+ MEDIATED BY INTERLEUKIN-8 PROTEIN. Journal of Biological Chemistry, 286 (40). pp. 34903-34913. ISSN 0021-9258

Majumdar, S. and Dutta, K. and Manna, S.K. and Basu, A. and Bishayi, B. (2011) Possible Protective Role of Chloramphenicol in TSST-1 and Coagulase-Positive Staphylococcus aureus-Induced Septic Arthritis with Altered Levels of Inflammatory Mediators. Inflammation, 34 (4). pp. 269-282. ISSN 0360-3997

Malini, S.S. and Vijaya Kumar, P. and Dalal, Ashwin and Dutta, Usha (2011) Evaluation of sex chromosomal anomalies in sperms among infertile males by Fluorescence in situ Hybridization. Journal of Cytology and Genetics, 12. pp. 77-84. ISSN 0253-7605

Marbaniang, C.N. and Gowrishankar, J. (2011) Role of ArgP (IciA) in Lysine-Mediated Repression in Escherichia coli. Journal of Bacteriology, 193 (21). pp. 5985-5996. ISSN 0021-9193

Mohammad, T.A.S. and Nagarajaram, H.A. (2011) SVM-based method for protein structural class prediction using secondary structural content and structural information of amino acids. Journal of Bioinformatics and Computational Biology, 9 (4). pp. 489-502. ISSN 0219-7200

Mohammad, T.A.S. and Nagarajaram, H.A. (2011) A hierarchical approach to protein fold prediction. Journal of Integrative Bioinformatics, 8 (1). p. 185. ISSN 1613-4516

Mrinal, N. and Tomar, A. and Nagaraju, J. (2011) Role of sequence encoded κB DNA geometry in gene regulation by Dorsal. Nucleic Acids Research, 39 (22). pp. 9574-9591. ISSN 0305-1048

Mukhopadhyay, Sangita and Balaji, K.N. (2011) The PE and PPE proteins of Mycobacterium tuberculosis. Tuberculosis, 91 (5). pp. 441-447. ISSN 1472-9792

N

Naik, U. and Charitha, G. and Kanakalatha, A. and Balakrishna, N. and Niranjan, D. and Manna, S.K. (2011) A Study of Nuclear Transcription Factor-Kappa B in Childhood Autism. PLoS ONE, 6 (5). e19488. ISSN 1932-6203

Nair, S. and Pandey, A.D. and Mukhopadhyay, Sangita (2011) The PPE18 Protein of Mycobacterium tuberculosis Inhibits NF- B/rel-Mediated Proinflammatory Cytokine Production by Upregulating and Phosphorylating Suppressor of Cytokine Signaling 3 Protein. The Journal of Immunology, 186 (9). pp. 5413-5424. ISSN 0022-1767

R

Radha Rama Devi, A. and Dutta, Usha (2011) Ring Chromosome 20 Associated with Refractory Epilepsy: A Case Report. Asian Journal of Medical Sciences, 2 (3). pp. 141-144. ISSN 2091-0576

Rajitha, Ponnala and Dalal, Ashwin (2011) Partial monosomy 7q. Indian Pediatrics, 48 (5). pp. 399-401. ISSN 0974-7559

Reich, D. and Patterson, N. and Kircher, M. and Delfin, F. and Nandineni, M.R. and Pugach, I. and Ko, A.M.-S. and Ko, Y.-C. and Jinam, T.A. and Phipps, M.E. and Saitou, N. and Wollstein, A. and Kayser, M. and Pääbo, S. and Stoneking, M. (2011) Denisova Admixture and the First Modern Human Dispersals into Southeast Asia and Oceania. The American Journal of Human Genetics, 89 (4). pp. 516-528. ISSN 0002-9297

S

Sahai, I. and Zytkowicz, T. and Rao, K.S. and Lakshmi, K.A. and Eaton, R.B. and Radha Rama Devi, A. (2011) Neonatal Screening for Inborn Errors of Metabolism Using Tandem Mass Spectrometry: Experience of the Pilot Study in Andhra Pradesh, India. The Indian Journal of Pediatrics, 78 (8). pp. 953-960. ISSN 0019-5456

Saxena, S. and Gowrishankar, J. (2011) Compromised Factor-Dependent Transcription Termination in a nusA Mutant of Escherichia coli: Spectrum of Termination Efficiencies Generated by Perturbations of Rho, NusG, NusA, and H-NS Family Proteins. Journal of Bacteriology, 193 (15). pp. 3842-3850. ISSN 0021-9193

Saxena, S. and Gowrishankar, J. (2011) Modulation of Rho-Dependent Transcription Termination in Escherichia coli by the H-NS Family of Proteins. Journal of Bacteriology, 193 (15). pp. 3832-3841. ISSN 0021-9193

Sharadamma, N. and Khan, K. and Kumar, S. and Patil, K.N. and Hasnain, S.E. and Muniyappa, K. (2011) Synergy between the N-terminal and C-terminal domains of Mycobacterium tuberculosis HupB is essential for high-affinity binding, DNA supercoiling and inhibition of RecA-promoted strand exchange. FEBS Journal, 278 (18). pp. 3447-3462. ISSN 1742-464X

Shukla, J.N. and Jadhav, S. and Nagaraju, J. (2011) Novel female-specific splice form of dsx in the silkworm, Bombyx mori. Genetica, 139 (1). pp. 23-31. ISSN 0016-6707

Silver, M.I. and Paul, P. and Sowjanya, A.P. and Ramakrishna, Gayatri and Vedantham, H. and Kalpana, B. and Shah, K.V. and Gravitt, P.E. (2011) Shedding of Epstein-Barr Virus and Cytomegalovirus from the Genital Tract of Women in a Periurban Community in Andhra Pradesh, India. Journal of Clinical Microbiology, 49 (7). pp. 2435-2439. ISSN 0095-1137

Singh, N.P. and Madabhushi, S.R. and Srivastava, S. and Senthilkumar, R. and Neeraja, C. and Khosla, Sanjeev and Mishra, R.K. (2011) Epigenetic profile of the euchromatic region of human Y chromosome. Nucleic Acids Research, 39 (9). pp. 3594-3606. ISSN 0305-1048

Subba Reddy, Maddika and Sridhar, K. and Rani, N. and Vivek Reddy, P. and Pokorny, J.L. and Sarkaria, J.N. and Chen, J. (2011) WWP2 is an E3 ubiquitin ligase for PTEN. Nature Cell Biology, 13 (6). pp. 728-732. ISSN 1465-7392

Suragani, M. and Rasheedi, S. and Hasnain, S.E. and Ehtesham, N.Z. (2011) The translation initiation factor, PeIF5B, from Pisum sativum displays chaperone activity. Biochemical and Biophysical Research Communications, 414 (2). pp. 390-396. ISSN 0006-291X

Swapna, G. and Chakraborty, A. and Kumari, V. and Sen, Ranjan and Nagaraja, V. (2011) Mutations in β′ subunit of Escherichia coli RNA polymerase perturb the activator polymerase functional interaction required for promoter clearance. Molecular Microbiology, 80 (5). pp. 1169-1185. ISSN 0950-382X

T

Thiagarajan, D. and Rachana, R.D. and Khosla, Sanjeev (2011) The DNA methyltranferase Dnmt2 participates in RNA processing during cellular stress. Epigenetics, 6 (1). pp. 103-113. ISSN 1559-2294

V

Vanitha, N. (2011) Positron Emission Tomography (PET) in Neuroscience research. Annals of Neurosciences, 18 (2). p. 36. ISSN 0972-7531

Y

Yadav, A.K. and Desai, P.R. and Rai, M.N. and Kaur, Rupinder and Ganesan, K. and Bachhawat, A.K. (2011) Glutathione biosynthesis in the yeast pathogens Candida glabrata and Candida albicans: essential in C. glabrata, and essential for virulence in C. albicans. Microbiology, 157 (2). pp. 484-495. ISSN 1350-0872