Article

Sharma, Aditi and Rustad, T. and Mahajan, G. and Arun Kumar, and Rao, K.V.S. and Banerjee, S. and Sherman, D.R. and Mande, S.C. (2016) Towards understanding the biological function of the unusual chaperonin Cpn60.1 (GroEL1) of Mycobacterium tuberculosis. Tuberculosis, 97. pp. 137-146. ISSN 1472-9792

Chilukoti, N. and Kumar, C.M.S. and Mande, S.C. (2016) GroEL2 OF M. tuberculosis reveals the importance of structural pliability in chaperonin function. Journal of Bacteriology, 198 (3). pp. 486-497. ISSN 0021-9193

Hegde, S.R. and Pal, K. and Mande, S.C. (2014) Differential enrichment of regulatory motifs in the composite network of protein-protein and gene regulatory interactions. BMC Systems Biology, 8. p. 26. ISSN 1752-0509

Phulera, S. and Akif, M. and Sardesai, A.A. and Mande, S.C. (2014) Redox Proteins of Mycobacterium tuberculosis. Journal of the Indian Institute of Science, 94 (1). pp. 127-137. ISSN 0970-4140

Hegde, S.R. and Rajasingh, H. and Das, C. and Mande, S.S. and Mande, S.C. (2012) Understanding Communication Signals during Mycobacterial Latency through Predicted Genome-Wide Protein Interactions and Boolean Modeling. PLoS ONE, 7 (3). e33893. ISSN 1932-6203

Jailkhani, N. and Ravichandran, S. and Hegde, S.R. and Siddiqui, Z. and Mande, S.C. and Rao, K.V.S. (2011) Delineation of key regulatory elements identifies points of vulnerability in the mitogen-activated signaling network. Genome Research, 21 (12). pp. 2067-2081. ISSN 1088-9051

Arora, A. and Chandra, N.R. and Das, A. and Gopal, B. and Mande, S.C. and Prakash, B. and Ramachandran, R. and Sankaranarayanan, R. and Sekar, K. and Suguna, K. and Tyagi, Anil K. and Vijayan, M. (2011) Structural biology of Mycobacterium tuberculosis proteins: The Indian efforts. Tuberculosis, 91 (5). pp. 456-468. ISSN 1472-9792

Kumar, C.M.S. and Mande, S.C. (2011) Protein chaperones and non-protein substrates: on substrate promiscuity of GroEL. Current Science , 100 (11). pp. 1646-1653. ISSN 0011-3891

Kumar, P. and Joshi, D.C. and Akif, M. and Akhter, Y. and Hasnain, S.E. and Mande, S.C. (2010) Mapping Conformational Transitions in Cyclic AMP Receptor Protein: Crystal Structure and Normal-Mode Analysis of Mycobacterium tuberculosis apo-cAMP Receptor Protein. Biophysical Journal, 98 (2). pp. 305-314. ISSN 0006-3495

Manimaran, P. and Hegde, S.R. and Mande, S.C. (2009) Prediction of conditional gene essentiality through graph theoretical analysis of genome-wide functional linkages. Molecular BioSystems, 5 (12). pp. 1936-1942. ISSN 1742-206X

Nair, S. and Ramaswamy, P.A. and Ghosh, S. and Joshi, D.C. and Pathak, N. and Siddiqui, I. and Sharma, P. and Hasnain, S.E. and Mande, S.C. and Mukhopadhyay, Sangita (2009) The PPE18 of Mycobacterium tuberculosis Interacts with TLR2 and Activates IL-10 Induction in Macrophage. The Journal of Immunology, 183 (10). pp. 6269-6281. ISSN 0022-1767

Kumar, C.M.S. and Khare, G. and Srikanth, C.V. and Tyagi, Anil K. and Sardesai, A.A. and Mande, S.C. (2009) Facilitated Oligomerization of Mycobacterial GroEL: Evidence for Phosphorylation-Mediated Oligomerization. Journal of Bacteriology, 191 (21). pp. 6525-6538. ISSN 0021-9193

Basu, D. and Khare, G. and Singh, S. and Tyagi, Anil K. and Khosla, Sanjeev and Mande, S.C. (2009) A novel nucleoid-associated protein of Mycobacterium tuberculosis is a sequence homolog of GroEL. Nucleic Acids Research, 37 (15). pp. 4944-4954. ISSN 0305-1048

Hegde, S.R. and Manimaran, P. and Mande, S.C. (2008) Dynamic Changes in Protein Functional Linkage Networks Revealed by Integration with Gene Expression Data. PLoS Computational Biology, 4 (11). e1000237. ISSN 1553-7358

Kumar, K.P. and Issac, B. and Dodson, E.J. and Turkenburg, J.P. and Mande, S.C. (2008) Crystal Structure of Mycobacterium tuberculosis YefM Antitoxin Reveals that it is Not an Intrinsically Unstructured Protein. Journal of Molecular Biology, 383 (3). pp. 482-493. ISSN 0022-2836

Akif, M. and Khare, G. and Tyagi, Anil K. and Mande, S.C. and Sardesai, A.A. (2008) Functional Studies of Multiple Thioredoxins from Mycobacterium tuberculosis. Journal of Bacteriology, 190 (21). pp. 7087-7095. ISSN 0021-9193

Khan, N. and Alam, K. and Mande, S.C. and Valluri, V.L. and Hasnain, S.E. and Mukhopadhyay, Sangita (2008) Mycobacterium tuberculosisheat shock protein 60 modulates immune response to PPD by manipulating the surface expression of TLR2 on macrophages. Cellular Microbiology, 10 (8). pp. 1711-1722. ISSN 1462-5814

Goyal, K. and Mande, S.C. (2008) Exploiting 3D structural templates for detection of metal-binding sites in protein structures. Proteins: Structure, Function, and Bioinformatics, 70 (4). pp. 1206-1218. ISSN 0887-3585

Goyal, K. and Mohanty, D. and Mande, S.C. (2007) PAR-3D: a server to predict protein active site residues. Nucleic Acids Research, 35 (Web Se). W503-W505. ISSN 0305-1048

Yellaboina, S. and Goyal, K. and Mande, S.C. (2007) Inferring genome-wide functional linkages in E. coli by combining improved genome context methods: Comparison with high-throughput experimental data. Genome Research, 17 (4). pp. 527-535. ISSN 1088-9051

Vidyasagar, M. and Hasnain, S.E. and Mande, S.C. and Nagarajaram, H.A. and Ranjan, Akash and Acharya, M.S. and Anwaruddin, M. and Arun, S.K. and Gyanrajkumar, and Kumar, D. and Priya, S. and Ranjan, S. and Reddi, B.R. and Seshadri, J. and Sravan Kumar, P. and Swaminathan, S. and Uma Devi, P. and Vindal, V. and Vijaykrishnan, S. (2007) BioSuite: A comprehensive bioinformatics software package (A unique industry-academia collaboration). Current Science, 92 (1). pp. 29-38. ISSN 0011-3891

Goyal, K. and Qamra, R. and Mande, S.C. (2006) Multiple Gene Duplication and Rapid Evolution in the groEL Gene: Functional Implications. Journal of Molecular Evolution, 63 (6). pp. 781-787. ISSN 0022-2844

Akif, M. and Akhter, Y. and Hasnain, S.E. and Mande, S.C. (2006) Crystallization and preliminary X-ray crystallographic studies ofMycobacterium tuberculosisCRP/FNR family transcription regulator. Acta Crystallographica Section F Structural Biology and Crystallization Communications, 62 (9). pp. 873-875. ISSN 1744-3091

Qamra, R. and Prakash, P. and Aruna, B. and Hasnain, S.E. and Mande, S.C. (2006) The 2.15 Å Crystal Structure ofMycobacterium tuberculosisChorismate Mutase Reveals an Unexpected Gene Duplication and Suggests a Role in Host−Pathogen Interactions†. Biochemistry, 45 (23). pp. 6997-7005. ISSN 0006-2960

Vijayakrishnan, S. and Qamra, R. and Verma, C.S. and Sen, Ranjan and Mande, S.C. (2006) Cation-Mediated Interplay of Loops in Chaperonin-10. Journal of Biomolecular Structure and Dynamics, 23 (4). pp. 365-375. ISSN 0739-1102

Akif, M. and Suhre, K. and Verma, C.S. and Mande, S.C. (2005) Conformational flexibility of Mycobacterium tuberculosisthioredoxin reductase: crystal structure and normal-mode analysis. Acta Crystallographica Section D Biological Crystallography, 61 (12). pp. 1603-1611. ISSN 0907-4449

Qamra, R. and Mande, S.C. and Coates, A.R.M. and Henderson, B. (2005) The unusual chaperonins of Mycobacterium tuberculosis. Tuberculosis, 85 (5-6). pp. 385-394. ISSN 1472-9792

Deshpande, A. and Nimsadkar, S. and Mande, S.C. (2005) Effect of alcohols on protein hydration: crystallographic analysis of hen egg-white lysozyme in the presence of alcohols. Acta Crystallographica Section D Biological Crystallography, 61 (7). pp. 1005-1008. ISSN 0907-4449

Qamra, R. and Prakash, P. and Aruna, B. and Hasnain, S.E. and Mande, S.C. (2005) Crystallization and preliminary X-ray crystallographic studies ofMycobacterium tuberculosischorismate mutase. Acta Crystallographica Section F Structural Biology and Crystallization Communications, 61 (5). pp. 473-475. ISSN 1744-3091

Qamra, R. and Mande, S.C. (2004) Crystal Structure of the 65-Kilodalton Heat Shock Protein, Chaperonin 60.2, of Mycobacterium tuberculosis. Journal of Bacteriology, 186 (23). pp. 8105-8113. ISSN 0021-9193

Qamra, R. and Srinivas, Volety and Mande, S.C. (2004) Mycobacterium tuberculosis GroEL Homologues Unusually Exist as Lower Oligomers and Retain the Ability to Suppress Aggregation of Substrate Proteins. Journal of Molecular Biology, 342 (2). pp. 605-617. ISSN 0022-2836

Akif, M. and Chauhan, R. and Mande, S.C. (2004) Expression, purification, crystallization and preliminary X-ray crystallographic studies of Mycobacterium tuberculosisthioredoxin reductase. Acta Crystallographica Section D Biological Crystallography, 60 (4). pp. 777-779. ISSN 0907-4449

Aruna, B. and Ghosh, S. and Singh, A.K. and Mande, S.C. and Srinivas, Volety and Chauhan, R. and Ehtesham, N.Z. (2003) Human Recombinant Resistin Protein Displays a Tendency To Aggregate by Forming Intermolecular Disulfide Linkages†. Biochemistry, 42 (36). pp. 10554-10559. ISSN 0006-2960

Terwilliger, T.C. and Park, M.S. and Waldo, G.S. and Berendzen, J. and Hung, L.-W and Kim, C.-Y and Smith, C.V. and Sacchettini, J. and Bellinzoni, M. and Bossi, R. and De Rossi, E. and Mattevi, A. and Milano, A. and Riccardi, G. and Rizzi, M. and Roberts, M.M. and Coker, A.R. and Fossati, G. and Mascagni, P. and Coates, A.R.M. and Wood, S.P. and Goulding, C.W. and Apostol, M. and Anderson, D.H. and Gill, H.S. and Eisenberg, D.S. and Taneja, B. and Mande, S.C. and Pohl, E. and Lamzin, V. and Tucker, P. and Wilmanns, M. and Colovos, C. and Meyer-Klaucke, W. and Munro, A.W. and McLean, K.J. and Marshall, K.R. and Leys, D. and Yang, J.K. and Yoon, H.-J. and Lee, B.I. and Lee, M.G. and Kwak, J.E. and Han, B.W. and Lee, J.Y. and Baek, S.-H. and Suh, S.W. and Komen, M.M. and Arcus, V.L. and Baker, E.N. and Lott, J.S. and Jacobs, W. and Alber, T. and Rupp, B. (2003) The TB structural genomics consortium: a resource for Mycobacterium tuberculosis biology. Tuberculosis, 83 (4). pp. 223-249. ISSN 1472-9792

Qamra, R. and Taneja, B. and Mande, S.C. (2002) Identification of conserved residue patterns in small beta-barrel proteins. Protein Engineering, 15 (12). pp. 967-77. ISSN 0269-2139

Chauhan, R. and Mande, S.C. (2002) Site-directed mutagenesis reveals a novel catalytic mechanism of Mycobacterium tuberculosis alkylhydroperoxidase C. Biochemical Journal, 367 (Pt 1). pp. 255-61. ISSN 0264-6021

Goulding, C.W. and Apostol, M. and Anderson, D.H. and Gill, H.S. and Smith, C.V. and Kuo, M.R. and Yang, J.K. and Waldo, G.S. and Suh, S.W. and Chauhan, R. and Kale, A. and Bachhawat, N. and Mande, S.C. and Johnston, J.M. and Lott, J.S. and Baker, E.N. and Arcus, V.L. and Leys, D. and McLean, K.J. and Munro, A.W. and Berendzen, J. and Sharma, V. and Park, M.S. and Eisenberg, D.A. and Sacchettini, J. and Alber, T. and Rupp, B. and Jacobs, W. and Terwilliger, T.C. (2002) The TB structural genomics consortium: providing a structural foundation for drug discovery. Current Drug Targets: Infectious Disorders, 2 (2). pp. 121-141. ISSN 1568-0053

Taneja, B. and Mande, S.C. (2002) Structure ofMycobacterium tuberculosischaperonin-10 at 3.5 Å resolution. Acta Crystallographica Section D Biological Crystallography, 58 (2). pp. 260-266. ISSN 0907-4449