Article

Ahmed, N. and Majeed, A.A. and Ahmed, I. and Hussain, M.A. and Alvi, A. and Devi, S.M. and Rizwan, M. and Ranjan, Akash and Sechi, L.A. and Mégraud, F. (2007) genoBASE pylori: A genotype search tool and database of the human gastric pathogen Helicobacter pylori. Infection, Genetics and Evolution, 7 (4). pp. 463-468. ISSN 1567-1348

Ahmed, N. and Saini, V. and Raghuvanshi, S. and Khurana, J.P. and Tyagi, Akhilesh K. and Tyagi, Anil K. and Hasnain, S.E. (2007) Molecular Analysis of a Leprosy Immunotherapeutic Bacillus Provides Insights into Mycobacterium Evolution. PLoS ONE, 2 (10). e968. ISSN 1932-6203

Akhter, Y. and Ahmed, I. and Devi, S.M. and Ahmed, N. (2007) The co-evolved Helicobacter pylori and gastric cancer: trinity of bacterial virulence, host susceptibility and lifestyle. Infectious Agents and Cancer, 2 (1). p. 2. ISSN 1750-9378

Akhter, Y. and Tundup, S. and Hasnain, S.E. (2007) Novel biochemical properties of a CRP/FNR family transcription factor from Mycobacterium tuberculosis. International Journal of Medical Microbiology, 297 (6). pp. 451-457. ISSN 1438-4221

Alvi, A. and Devi, S.M. and Ahmed, I. and Hussain, M.A. and Rizwan, M. and Lamouliatte, H. and Megraud, F. and Ahmed, N. (2007) Microevolution of Helicobacter pylori Type IV Secretion Systems in an Ulcer Disease Patient over a Ten-Year Period. Journal of Clinical Microbiology, 45 (12). pp. 4039-4043. ISSN 0095-1137

Aparna, D. and Kenchappa, P. and Sharma, S. and Peeters, J.K. and Ahmed, N. and Garg, P. and Das, T.P. and Hasnain, S.E. (2007) High-Resolution Genome Profiling DifferentiatedStaphylococcus epidermidisIsolated from Patients with Ocular Infections and Normal Individuals. Investigative Opthalmology & Visual Science, 48 (7). pp. 3239-3245. ISSN 1552-5783

Archak, S. and Lakshminarayanareddy, V. and Nagaraju, J. (2007) High-throughput multiplex microsatellite marker assay for detection and quantification of adulteration in Basmati rice (Oryza sativa). Electrophoresis, 28 (14). pp. 2396-2405. ISSN 0173-0835

Archak, S. and Meduri, E. and Kumar, P.S. and Nagaraju, J. (2007) InSatDb: a microsatellite database of fully sequenced insect genomes. Nucleic Acids Research, 35 (Suppl). D36-D39. ISSN 0305-1048

Archak, S. and Nagaraju, J. (2007) Computational Prediction of Rice (Oryza sativa) miRNA Targets. Genomics, Proteomics & Bioinformatics, 5 (3-4). pp. 196-206. ISSN 1672-0229

Archak, S. and Nagaraju, J. (2007) InSatDb: A Genomic Tool for Insect Geneticists. Fly, 1 (5). pp. 279-281. ISSN 1933-6934

Banerjee, S. and Nandyala, A.K. and Raviprasad, P. and Ahmed, N. and Hasnain, S.E. (2007) Iron-Dependent RNA-Binding Activity of Mycobacterium tuberculosis Aconitase. Journal of Bacteriology, 189 (11). pp. 4046-4052. ISSN 0021-9193

Bashyam, M.D. and Savithri, G.R. and Gopikrishna, M. and Narasimhan, C. (2007) A p.R870H mutation in the beta-cardiac myosin heavy chain 7 gene causes familial hypertrophic cardiomyopathy in several members of an Indian family. Canadian Journal of Cardiology, 23 (10). pp. 788-790. ISSN 0828-282X

Biju, S.D. and Bocxlaer, I.V. and Giri, V.B. and Roelants, K. and Nagaraju, J. and Bossuyt, F. (2007) A new nightfrog, Nyctibatrachus minimus sp. nov.(Anura: Nyctibatrachidae): The smallest frog from India. Current Science, 93 (6). pp. 854-858. ISSN 0011-3891

Boddupalli, C.S. and Ghosh, S. and Rahim, S.C. and Nair, S. and Ehtesham, N.Z. and Hasnain, S.E. and Mukhopadhyay, Sangita (2007) Nitric oxide inhibits interleukin-12 p40 through p38 MAPK-mediated regulation of calmodulin and c-rel. Free Radical Biology and Medicine, 42 (5). pp. 686-697. ISSN 0891-5849

Chalissery, J. and Banerjee, S. and Bandey, I. and Sen, Ranjan (2007) Transcription Termination Defective Mutants of Rho: Role of Different Functions of Rho in Releasing RNA from the Elongation Complex. Journal of Molecular Biology, 371 (4). pp. 855-872. ISSN 0022-2836

Cheeran, A. and Kolli, N.R. and Sen, Ranjan (2007) The Site of Action of the Antiterminator Protein N from the Lambdoid Phage H-19B. Journal of Biological Chemistry, 282 (42). pp. 30997-31007. ISSN 0021-9258

Devi, S.M. and Ahmed, I. and Francalacci, P. and Hussain, M.A. and Akhter, Y. and Alvi, A. and Sechi, L.A. and Mégraud, F. and Ahmed, N. (2007) Ancestral European roots of Helicobacter pylori in India. BMC Genomics, 8 (1). p. 184. ISSN 1471-2164

Gandhe, A.S. and Janardhan, G. and Nagaraju, J. (2007) Immune upregulation of novel antibacterial proteins from silkmoths (Lepidoptera) that resemble lysozymes but lack muramidase activity. Insect Biochemistry and Molecular Biology, 37 (7). pp. 655-666. ISSN 0965-1748

Gandhe, A.S. and John, S.H. and Nagaraju, J. (2007) Noduler, A Novel Immune Up-Regulated Protein Mediates Nodulation Response in Insects. The Journal of Immunology, 179 (10). pp. 6943-6951. ISSN 0022-1767

Gita Kumari, and Singhal, P.K. and Subba Rao, M.R.K. and Mahalingam, S. (2007) Nuclear Transport of Ras-associated Tumor Suppressor Proteins: Different Transport Receptor Binding Specificities for Arginine-rich Nuclear Targeting Signals. Journal of Molecular Biology, 367 (5). pp. 1294-1311. ISSN 0022-2836

Gokul, G. and Gautami, B. and Malathi, S. and Sowjanya, A.P. and Usha Rani, P. and Jain, M. and Ramakrishna, Gayatri and Khosla, Sanjeev (2007) DNA methylation profile at the DNMT3L promoter: a potential biomarker for cervical cancer. Epigenetics, 2 (2). pp. 80-5. ISSN 1559-2308

Gowrishankar, J. (2007) Faculty positions in scientific/academic institutions and citizenship issues. Current Science , 93 (12). p. 1647. ISSN 0011-3891

Goyal, K. and Mohanty, D. and Mande, S.C. (2007) PAR-3D: a server to predict protein active site residues. Nucleic Acids Research, 35 (Web Se). W503-W505. ISSN 0305-1048

Kanginakudru, S. and Royer, C. and Edupalli, S.V. and Jalabert, A. and Mauchamp, B. and Prasad, S.V. and Chavancy, G. and Couble, P. and Nagaraju, J. (2007) Targeting ie-1 gene by RNAi induces baculoviral resistance in lepidopteran cell lines and in transgenic silkworms. Insect Molecular Biology, 16 (5). pp. 635-644. ISSN 0962-1075

Khan, N. and Ghousunnissa, S. and Jegadeeswaran, S.M. and Thiagarajan, D. and Hasnain, S.E. and Mukhopadhyay, Sangita (2007) Anti-B7-1/B7-2 antibody elicits innate-effector responses in macrophages through NF- B-dependent pathway. International Immunology, 19 (4). pp. 477-486. ISSN 0953-8178

Laishram, R.S. and Gowrishankar, J. (2007) Environmental regulation operating at the promoter clearance step of bacterial transcription. Genes & Development, 21 (10). pp. 1258-1272. ISSN 0890-9369

Manna, S.K. and Aggarwal, R.S. and Sethi, G. and Aggarwal, B.B. and Ramesh, G.T. (2007) Morin (3,5,7,2',4'-Pentahydroxyflavone) abolishes nuclear factor-kappaB activation induced by various carcinogens and inflammatory stimuli, leading to suppression of nuclear factor-kappaB-regulated gene expression and up-regulation of apoptosis. Clinical Cancer Research, 13 (7). pp. 2290-7. ISSN 1078-0432

Meglécz, E. and Anderson, S.J. and Bourguet, D. and Butcher, R. and Caldas, A. and Cassel-Lundhagen, A. and d'Acier, A.C. and Dawson, D.A. and Faure, N. and Fauvelot, C. and Franck, P. and Harper, G. and Keyghobadi, N. and Kluetsch, C. and Muthulakshmi, M. and Nagaraju, J. and Patt, A. and Péténian, F. and Silvain, J.-F. and Wilcock, H.R. (2007) Microsatellite flanking region similarities among different loci within insect species. Insect Molecular Biology, 16 (2). pp. 175-185. ISSN 0962-1075

Mudunuri, S.B. and Nagarajaram, H.A. (2007) IMEx: Imperfect Microsatellite Extractor. Bioinformatics, 23 (10). pp. 1181-1187. ISSN 1367-4803

Mukhopadhyay, Sangita and Nair, S. and Hasnain, S.E. (2007) Nitric Oxide: Friendly Rivalry in Tuberculosis. Current Signal Transduction Therapy, 2 (2). pp. 121-128. ISSN 1574-3624

Naushad, S.M. and Jain, J.M.N. and Angalena, M.R.K. and Prasad, C.K. and Radha Rama Devi, A. (2007) Hyperhomocysteinemia and the compound heterozygous state for methylene tetrahydrofolate reductase are independent risk factors for deep vein thrombosis among South Indians. Blood Coagulation & Fibrinolysis, 18 (2). pp. 113-117. ISSN 0957-5235

Parveen, N. and Alvi, A. and Habeeb, A. and Khosla, Sanjeev and Khan, A.A. and Habibullah, C.M. (2007) Characterization of hepatic progenitors from human fetal liver using CD34 as a hepatic progenitor marker. World Journal of Gastroenterology, 13 (16). p. 2319. ISSN 1007-9327

Raghavendra, P.B. and Sreenivasan, Y. and Manna, S.K. (2007) Oleandrin induces apoptosis in human, but not in murine cells: Dephosphorylation of Akt, expression of FasL, and alteration of membrane fluidity. Molecular Immunology, 44 (9). pp. 2292-2302. ISSN 0161-5890

Ramasarma, T. (2007) Many faces of superoxide dismutase, originally known as erythrocuprein. Current Science , 92 (2). pp. 184-191. ISSN 0011-3891

Rasheedi, S. and Ghosh, S. and Suragani, M. and Tuteja, N. and Sopory, S.K. and Hasnain, S.E. and Ehtesham, N.Z. (2007) Pisum sativum contains a factor with strong homology to eIF5B. Gene, 399 (2). pp. 144-151. ISSN 0378-1119

Rasheedi, S. and Ramachandran, A. and Ehtesham, N.Z. and Hasnain, S.E. (2007) Biochemical characterization of Sf9 Sp-family-like protein factors reveals interesting features. Archives of Virology, 152 (10). pp. 1819-1828. ISSN 0304-8608

Ravi Kumar, A. and Satish, V. and Balakrish Nair, G. and Nagaraju, J. (2007) Genetic characterization of Vibrio choleraestrains by inter simple sequence repeat-PCR. FEMS Microbiology Letters, 272 (2). pp. 251-258. ISSN 0378-1097

Salih, B.A. and Abasiyanik, M.F. and Ahmed, N. (2007) A preliminary study on the genetic profile of cag pathogenicity-island and other virulent gene loci of Helicobacter pylori strains from Turkey. Infection, Genetics and Evolution, 7 (4). pp. 509-512. ISSN 1567-1348

Saxena, V. and Garg, S. and Ranjan, Sarita and Kochar, D. and Ranjan, Akash and Das, A. (2007) Analysis of elongation factor Tu (tuf A) of apicoplast from Indian Plasmodium vivax isolates. Infection, Genetics and Evolution, 7 (5). pp. 618-626. ISSN 1567-1348

Sechi, L.A. and Felis, G.E. and Ahmed, N. and Paccagnini, D. and Usai, D. and Ortu, S. and Molicotti, P. and Zanetti, S. (2007) Genome and transcriptome scale portrait of sigma factors in Mycobacterium avium subsp. paratuberculosis. Infection, Genetics and Evolution, 7 (4). pp. 424-432. ISSN 1567-1348

Sechi, L.A. and Ruehl, A. and Ahmed, N. and Usai, D. and Paccagnini, D. and Felis, G.E. and Zanetti, S. (2007) Mycobacterium aviumsubspeciesparatuberculosisinfects and multiplies in enteric glial cells. World Journal of Gastroenterology, 13 (43). pp. 5731-5735. ISSN 1007-9327

Shamim, M.T.A. and Anwaruddin, M. and Nagarajaram, H.A. (2007) Support Vector Machine-based classification of protein folds using the structural properties of amino acid residues and amino acid residue pairs. Bioinformatics, 23 (24). pp. 3320-3327. ISSN 1367-4803

Sreenu , V.B. and Kumar, P. and Nagaraju, J. and Nagarajaram, H.A. (2007) Simple sequence repeats in mycobacterial genomes. Journal of Biosciences, 32 (1). pp. 3-15. ISSN 0250-5991

Terrance, D.G.C. and Thangamani, A. and Srivastava, Varsha (2007) Variations of Mitochondrial DNA Sequence in Three Breeds of Rabbit (Oryctolagus Cuniculus). DNA and Cell Biology, 26 (7). pp. 505-515. ISSN 1044-5498

Vemireddy, L.R. and Archak, S. and Nagaraju, J. (2007) Capillary Electrophoresis Is Essential for Microsatellite Marker Based Detection and Quantification of Adulteration of Basmati Rice ( Oryza sativa). Journal of Agricultural and Food Chemistry, 55 (20). pp. 8112-8117. ISSN 0021-8561

Vidyasagar, M. and Hasnain, S.E. and Mande, S.C. and Nagarajaram, H.A. and Ranjan, Akash and Acharya, M.S. and Anwaruddin, M. and Arun, S.K. and Gyanrajkumar, and Kumar, D. and Priya, S. and Ranjan, S. and Reddi, B.R. and Seshadri, J. and Sravan Kumar, P. and Swaminathan, S. and Uma Devi, P. and Vindal, V. and Vijaykrishnan, S. (2007) BioSuite: A comprehensive bioinformatics software package (A unique industry-academia collaboration). Current Science, 92 (1). pp. 29-38. ISSN 0011-3891

Vindal, V. and Ranjan, Sarita and Ranjan, Akash (2007) In silico analysis and characterization of GntR family of regulators from Mycobacterium tuberculosis. Tuberculosis, 87 (3). pp. 242-247. ISSN 14729792

Vindal, V. and Suma, K. and Ranjan, Akash (2007) GntR family of regulators in Mycobacterium smegmatis: a sequence and structure based characterization. BMC Genomics, 8 (1). p. 289. ISSN 1471-2164

Yellaboina, S. and Goyal, K. and Mande, S.C. (2007) Inferring genome-wide functional linkages in E. coli by combining improved genome context methods: Comparison with high-throughput experimental data. Genome Research, 17 (4). pp. 527-535. ISSN 1088-9051

Book Section

Bashyam, M.D. and Hasnain, S.E. (2007) Array-Based Comparative Genomic Hybridization. Applications in Cancer and Tuberculosis. In: Bioarrays: From Basics to Diagnostics. Humana Press Inc, Totowa, N.J., USA, pp. 107-121. ISBN 978-1-58829-476-0