Article

Abraham, P.R. and Latha, G.S. and Valluri, V.L. and Mukhopadhyay, Sangita (2014) Mycobacterium tuberculosis PPE protein Rv0256c induces strong B cell response in tuberculosis patients. Infection, Genetics and Evolution, 22. pp. 244-9. ISSN 1567-7257

Adduri, R.S. and Viswakalyan, K. and Rajender, K.K. and Gowrishankar, S. and Pyne, S. and Srinivasulu, M. and Rao, S. and Uppin, S.G. and Ali, M.M. and Nayak, U.K. and Dhagam, S. and Mohana Vamsy, C. and Bashyam, M.D. (2014) Clinical and molecular genetic analysis of squamous cell carcinoma of the oral tongue. Cancer Research, 74 (19 Sup). p. 1883. ISSN 0008-5472

Adduri, R.S.R. and Katamoni, R. and Pandilla, R. and Madana, S.N. and Paripati, A.K. and Kotapalli, V. and Bashyam, M.D. (2014) TP53 Pro72 allele is enriched in oral tongue cancer and frequently mutated in esophageal cancer in India. PloS one, 9 (12). e114002. ISSN 1932-6203

Adduri, R.S.R. and Kotapalli, V. and Gupta, N.A. and Gowrishankar, S. and Srinivasulu, M. and Ali, M. and Rao, S. and Uppin, S.G. and Nayak, U.K. and Dhagam, S. and Mohana Vamsy, C. and Bashyam, M.D. (2014) P53 nuclear stabilization is associated with FHIT loss and younger age of onset in squamous cell carcinoma of oral tongue. BMC Clinical Pathology, 14 (1). p. 37. ISSN 1472-6890

Aggarwal, Shagun and Coutinho, M.F. and Dalal, Ashwin and Jain, S.J.M.N. and Prata, M.J. and Alves, S. (2014) Prenatal skeletal dysplasia phenotype in severe MLII alpha/beta with novel GNPTAB mutation. Gene, 542 (2). pp. 266-268. ISSN 1879-0038

Ali, A. and Veeranki, S.N. and Tyagi, Shweta (2014) A SET-domain-independent role of WRAD complex in cell-cycle regulatory function of mixed lineage leukemia. Nucleic Acids Research, 42 (12). pp. 7611-7624. ISSN 0305-1048

Archak, S. and Nagaraju, J. (2014) Computational analyses of protein coded by rice (Oryza sativa japonica) cDNA (GI: 32984786) indicate lectin like Ca(2+) binding properties for Eicosapenta Peptide Repeats (EPRs). Bioinformation, 10 (2). pp. 63-67. ISSN 0973-2063

Bairwa, G. and Rasheed, M. and Taigwal, R. and Sahoo, R. and Kaur, Rupinder (2014) GPI (glycosylphosphatidylinositol)-linked aspartyl proteases regulate vacuole homoeostasis in Candida glabrata. Biochemical journal, 458 (2). pp. 323-34. ISSN 1470-8728

Ballantyne, K.N. and Ralf, A. and Aboukhalid, R. and Achakzai, N.M. and Anjos, M.J. and Ayub, Q. and Balažic, J. and Ballantyne, J. and Ballard, D.J. and Berger, B. and Bobillo, C. and Bouabdellah, M. and Burri, H. and Capal, T. and Caratti, S. and Cárdenas, J. and Cartault, F. and Carvalho, E.F. and Carvalho, M. and Cheng, B. and Coble, M.D. and Comas, D. and Corach, D. and D'Amato, M.E. and Davison, S. and de Knijff, P. and De Ungria, M.C.A. and Decorte, R. and Dobosz, T. and Dupuy, B.M. and Elmrghni, S. and Gliwiński, M. and Gomes, S.C. and Grol, L. and Haas, C. and Hanson, E. and Henke, J. and Henke, L. and Herrera-Rodríguez, F. and Hill, C.R. and Holmlund, G. and Honda, K. and Immel, U.D. and Inokuchi, S. and Jobling, M.A. and Kaddura, M. and Kim, J.S. and Kim, S.H. and Kim, W. and King, T.E. and Klausriegler, E. and Kling, D. and Kovačević, L. and Kovatsi, L. and Krajewski, P. and Kravchenko, S. and Larmuseau, M.H.D. and Lee, E.Y. and Lessig, R. and Livshits, L.A. and Marjanović, D. and Minarik, M. and Mizuno, N. and Moreira, H. and Morling, N. and Mukherjee, M. and Munier, P. and Nagaraju, J. and Neuhuber, F. and Nie, S. and Nilasitsataporn, P. and Nishi, T. and Oh, H.H. and Olofsson, J. and Onofri, V. and Palo, J.U. and Pamjav, H. and Parson, W. and Petlach, M. and Phillips, C. and Ploski, R. and Prasad, S.P.R. and Primorac, D. and Purnomo, G.A. and Purps, J. and Rangel-Villalobos, H. and Rębała, K. and Rerkamnuaychoke, B. and Gonzalez, D.R. and Robino, C. and Roewer, L. and Rosa, A. and Sajantila, A. and Sala, A. and Salvador, J.M. and Sanz, P. and Schmitt, C. and Sharma, A.K. and Silva, D.A. and Shin, K.J. and Sijen, T. and Sirker, M. and Siváková, D. and Skaro, V. and Solano-Matamoros, C. and Souto, L. and Stenzl, V. and Sudoyo, H. and Syndercombe-Court, D. and Tagliabracci, A. and Taylor, D. and Tillmar, A. and Tsybovsky, I.S. and Tyler-Smith, C. and van der Gaag, K.J. and Vanek, D. and Völgyi, A. and Ward, D. and Willemse, P. and Yap, E.P.H. and Yong, R.Y.Y. and Pajnič, I.Z. and Kayser, M. (2014) Toward male individualization with rapidly mutating y-chromosomal short tandem repeats. Human Mutation, 35 (8). pp. 1021-32. ISSN 1098-1004

Bashyam, M.D. and Chaudhary, A.K. and Kiran, M. and Nagarajaram, H.A. and Radha Rama Devi, A. and Ranganath, P. and Dalal, Ashwin and Bashyam, L. and Gupta, N. and Kabra, M. and Muranjan, M. and Puri, R.D. and Verma, I.C. and Nampoothiri, S. and Kadandale, J.S. (2014) Splice, insertion-deletion and nonsense mutations that perturb the phenylalanine hydroxylase transcript cause phenylketonuria in India. Journal of Cellular Biochemistry, 115 (3). pp. 566-74. ISSN 1097-4644

Bashyam, M.D. and Viswakalyan, K. and Raman, R. and Yadav, B.K. and Chaudhary, A.K. and Gowrishankar, S. and Uppin, S.G. and Kongara, R. and Sastry, R.A. and Mohana Vamsy, C. and Patnaik, S. and Dsouza, S. and Desai, D.C. and Ashavaid, T. (2014) Identification of MMR gene exonic rearrangements in suspected Lynch syndrome tumors without loss of MMR expression. Cancer Research, 74 (19 Sup). p. 1285. ISSN 0008-5472

Bashyam, M.D. and Chaudhary, A.K. and Kiran, M. and Reddy, V. and Nagarajaram, H.A. and Dalal, Ashwin and Bashyam, L. and Sun, D. and Gupta, A. and Gupta, N. and Kabra, M. and Puri, R.D. and Radha Rama Devi, A. and Kapoor, S. and Danda, S. (2014) Molecular analyses of novel ASAH1 mutations causing Farber lipogranulomatosis: analyses of exonic splicing enhancer inactivating mutation. Clinical Genetics, 86 (6). pp. 530-538. ISSN 1399-0004

Basu, A. and Dasari, V. and Mishra, R.K. and Khosla, Sanjeev (2014) The CpG island encompassing the promoter and first exon of human DNMT3L gene is a PcG/TrX response element (PRE). PloS one, 9. e93561. ISSN 1932-6203

Basu Baul, T.S. and Kundu, S. and Linden, A. and Raviprakash, N. and Manna, S.K. and Guedes da Silva, M.F.C. (2014) Synthesis and characterization of some water soluble Zn(II) complexes with (E)-N-(pyridin-2-ylmethylene)arylamines that regulate tumour cell death by interacting with DNA. Dalton Transactions , 43 (3). pp. 1191-202. ISSN 1477-9234

Bidchol, A.M. and Dalal, Ashwin and Shah, H. and Suryanarayana, S. and Nampoothiri, S. and Kabra, M. and Gupta, N. and Danda, S. and Gowrishankar, K. and Phadke, S.R. and Kapoor, S. and Kamate, M. and Verma, I.C. and Puri, R.D. and Sankar, V.H. and Radha Rama Devi, A. and Patil, S.J. and Ranganath, P. and Jain, S.J.M.N. and Agarwal, Meenal and Singh, Ankur and Mishra, P. and Tamhankar, P.M. and Gopinath, P.M. and Nagarajaram, H.A. and Satyamoorthy, K. and Girisha, K.M. (2014) GALNS Mutations in Indian Patients With Mucopolysaccharidosis IVA. American Journal of Medical Genetics Part A, 164A (11). pp. 2793-2801. ISSN 1552-4833

Borah, S. and Shivarathri, R. and Srivastava, V.K. and Ferrari, S. and Sanglard, D. and Kaur, Rupinder (2014) Pivotal Role for a Tail Subunit of the RNA Polymerase II Mediator Complex CgMed2 in Azole Tolerance and Adherence in Candida glabrata. Antimicrobial Agents and Chemotherapy, 58 (10). pp. 5976-5986. ISSN 0066-4804

Chaudhary, Neelam and Subba Reddy, Maddika (2014) WWP2-WWP1 Ubiquitin Ligase Complex Coordinated by PPM1G Maintains the Balance between Cellular p73 and Delta Np73 Levels. Molecular and Cellular Biology, 34 (19). pp. 3754-3764. ISSN 0270-7306

Dalal, Ashwin (2014) Molecular cytogenetic characterization of chromosomal rearrangements - utility in genetic counseling and research. Molecular Cytogenetics, 7 (Suppl ). I12. ISSN 1755-8166

Das, T. and Sahu, N.P. and Chakraborty, S.K. and Chatterjee, N. and Mohammed, M.S. and Dalvi, R.S. and Baruah, K. and Pal, A.K. (2014) Ultrastructural alterations in the gills of Labeo rohita fingerlings exposed to thermal extremes. Anatomia, Histologia, Embryologia, 43 (1). pp. 75-80. ISSN 1439-0264

Dutta, Usha and Vempally, S. and Ranganath, P. and Dalal, Ashwin (2014) A novel combined 15q11.2 duplication and a bisatellited supernumerary marker derived from chromosome 22: molecular characterization of the marker. Gene, 539 (1). pp. 162-7. ISSN 1879-0038

Dutta, Usha and Rajitha, Ponnala and Dalal, Ashwin (2014) A Novel de novo Balanced Reciprocal Translocation t(18;22) Associated with Recurrent Miscarriages: A Case Report. Journal of Reproduction and Infertility, 15 (2). pp. 113-116. ISSN 2251-676X

Hegde, S.R. and Pal, K. and Mande, S.C. (2014) Differential enrichment of regulatory motifs in the composite network of protein-protein and gene regulatory interactions. BMC Systems Biology, 8. p. 26. ISSN 1752-0509

Jangam Reddy, J.R. and Panigrahi, S. and Lotfi, K. and Yadav, M. and Subba Reddy, Maddika and Tripathi, A.K. and Sanyal, S. and Łos, M.J. (2014) Mapping of apoptin-interaction with BCR-ABL1, and development of apoptin-based targeted therapy. Oncotarget, 5 (16). pp. 7198-7211. ISSN 1949-2553

Kantaputra, P.N. and Kayserili, H. and Guven, Y. and Kantaputra, W. and Balci, M.C. and Tanpaiboon, P. and Tananuvat, N. and Uttarilli, Anusha and Dalal, Ashwin (2014) Clinical manifestations of 17 patients affected with mucopolysaccharidosis type VI and eight novelARSBmutations. American Journal of Medical Genetics Part A, 164 (6). pp. 1443-1453. ISSN 1552-4825

Kantaputra, P.N. and Kayserili, H. and Guven, Y. and Kantaputra, W. and Balci, M.C. and Tanpaiboon, P. and Uttarilli, Anusha and Dalal, Ashwin (2014) Oral manifestations of 17 patients affected with mucopolysaccharidosis type VI. Journal of Inherited Metabolic Disease, 37 (2). pp. 263-8. ISSN 1573-2665

Kasbekar, D.P. (2014) Are any fungal genes nucleus-limited? Journal of Biosciences, 39 (3). pp. 341-346. ISSN 0250-5991

Kasbekar, D.P. (2014) Lesser models [Editorial]. Journal of Biosciences, 39 (1). p. 1. ISSN 0973-7138

Khursheed, M. and Bashyam, M.D. (2014) Apico-basal polarity complex and cancer. Journal of Biosciences, 39 (1). pp. 145-55. ISSN 0973-7138

Love, J.M. and Prosser, D. and Love, D.R. and Krishnaprasad, C. and Dalal, Ashwin and Aggarwal, Shagun (2014) A novel glycine decarboxylase gene mutation in an Indian family with nonketotic hyperglycinemia. Journal of Child Neurology, 29 (1). pp. 122-7. ISSN 1708-8283

Mahali, S.K. and Verma, N. and Manna, S.K. (2014) Advanced Glycation End Products Induce Lipogenesis: Regulation by Natural Xanthone through Inhibition of ERK and NF-kappa B. Journal of Cellular Physiology, 229 (12). pp. 1972-1980. ISSN 1097-4652

Mon, H. and Lee, J.M. and Mita, K. and Goldsmith, M.R. and Kusakabe, T. (2014) Chromatin-induced spindle assembly plays an important role in metaphase congression of silkworm holocentric chromosomes. Insect Biochemistry and Molecular Biology, 45. pp. 40-50. ISSN 1879-0240

Mudunuri, S.B. and Patnana, S. and Nagarajaram, H.A. (2014) MICdb3.0: a comprehensive resource of microsatellite repeats from prokaryotic genomes. Database : the Journal of Biological Databases and Curation, 2014. bau005. ISSN 1758-0463

Nagaraju, J. and Gopinath, G. and Sharma, V. and Shukla, J.N. (2014) Lepidopteran sex determination: a cascade of surprises. Sexual Development, 8 (1-3). pp. 104-12. ISSN 1661-5433

Nandagopalan, R.S. and Phadke, S.R. and Dalal, Ashwin and Ranganath, P. (2014) Novel mutations in PRG4 gene in two Indian families with camptodactyly-arthropathy- coxa vara- pericarditis (CACP) syndrome. Indian Journal of Medical Research, 140 (2). pp. 221-226. ISSN 0971-5916

Naushad, S.M. and Krishnaprasad, C. and Radha Rama Devi, A. (2014) Adaptive developmental plasticity in methylene tetrahydrofolate reductase (MTHFR) C677T polymorphism limits its frequency in South Indians. Molecular Biology Reports, 41 (5). pp. 3045-50. ISSN 1573-4978

Pandey, S.D. and Choudhury, Mitali and Yousuf, S. and Wheeler, P.R. and Gordon, S.V. and Ranjan, Akash and Sritharan, Manjula (2014) Iron-Regulated Protein HupB of Mycobacterium tuberculosis Positively Regulates Siderophore Biosynthesis and Is Essential for Growth in Macrophages. Journal of Bacteriology, 196 (10). pp. 1853-1865. ISSN 0021-9193

Patil, S.J. and Rai, G.K. and Bhat, V. and Ramesh, V.A. and Nagarajaram, H.A. and Matalia, J. and Phadke, S.R. (2014) Distal Arthrogryposis Type 5D With a Novel ECEL1 Gene Mutation. American Journal of Medical Genetics Part A, 164A (11). pp. 2857-2862. ISSN 1552-4833

Phulera, S. and Akif, M. and Sardesai, A.A. and Mande, S.C. (2014) Redox Proteins of Mycobacterium tuberculosis. Journal of the Indian Institute of Science, 94 (1). pp. 127-137. ISSN 0970-4140

Pradhan, B.B. and Chatterjee, Subhadeep (2014) Reversible non-genetic phenotypic heterogeneity in bacterial quorum sensing. Molecular Microbiology, 92 (3). pp. 557-69. ISSN 1365-2958

Rachita, H R. and Nagarajaram, H.A. (2014) Viral proteins that bridge unconnected proteins and components in the human PPI network. Molecular BioSystems, 10 (9). pp. 2448-2458. ISSN 1742-206X

Ram, B.M. and Ramakrishna, Gayatri (2014) Endoplasmic reticulum vacuolation and unfolded protein response leading to paraptosis like cell death in cyclosporine A treated cancer cervix cells is mediated by cyclophilin B inhibition. Biochimica et Biophysica Acta - Molecular Cell Research , 1843 (11). pp. 2497-2512. ISSN 0167-4889

Raman, R. and Kongara, R. and Kotapalli, V. and Gowrishankar, S. and Sastry, R.A. and Nagari, B. and Bashyam, M.D. (2014) Pathological stage significantly predicts survival in colorectal cancer patients: a study from two tertiary care centers in India. Colorectal Cancer, 3 (3). pp. 265-275. ISSN 1758-194X

Raman, R. and Kotapalli, V. and Adduri, R.S.R. and Gowrishankar, S. and Bashyam, L. and Chaudhary, A. and Mohana Vamsy, C. and Patnaik, S. and Srinivasulu, M. and Sastry, R.A. and Rao, S. and Vasala, A. and Kalidindi, N.R. and Pollack, J.R. and Murthy, S. and Bashyam, M.D. (2014) Evidence for possible non-canonical pathway(s) driven early-onset colorectal cancer in India. Molecular Carcinogenesis, 53 (S1). E181-E186. ISSN 1098-2744

Raman, R. and Kotapalli, V. and Mohana Vamsy, C. and Patnaik, S.C. and Srinivasulu, M. and Bashyam, M.D. (2014) A positive family history of cancer or lifestyle factors may not explain the high incidence of early-onset colorectal cancer in India. Colorectal Cancer, 3 (5). pp. 409-416. ISSN 1758-194X

Ramasarma, T. (2014) Trendy science research communications [Commentary]. Current Science , 106 (4). pp. 506-508. ISSN 0011-3891

Raviprakash, N. and Manna, S.K. (2014) Short-term exposure to oleandrin enhances responses to IL-8 by increasing cell surface IL-8 receptors. British Journal of Pharmacology, 171 (14). pp. 3339-51. ISSN 1476-5381

Sackton, T.B. and Corbett-Detig, R.B. and Nagaraju, J. and Vaishna, L. and Arunkumar, K.P. and Hartl, D.L.. (2014) Positive selection drives faster-Z evolution in silkmoths. Evolution, 68 (8). pp. 2331-2342. ISSN 0014-3820

Salvemini, M. and Arunkumar, K.P. and Nagaraju, J. (2014) De Novo Assembly and Transcriptome Analysis of the Mediterranean Fruit Fly Ceratitis capitata Early Embryos. PLoS One, 9 (12). e114191. ISSN 1932-6203

Saranathan, R. and Tomar, A. and Sudhakar, P. and Arunkumar, K.P. and Prashanth, K. (2014) Draft Genome Sequence of a Multidrug-Resistant Acinetobacter baumannii PKAB07 Clinical Strain from India Belonging to Sequence Type 195. Genome Announcements, 2 (2). e00184-14. ISSN 2169-8287

Satyavathi, V.V. and Minz, A. and Nagaraju, J. (2014) Nodulation: an unexplored cellular defense mechanism in insects. Cellular Signalling, 26 (8). pp. 1753-63. ISSN 1873-3913

Shah, A.H. and Singh, Ashutosh and Dhamgaye, S. and Chauhan, N. and Vandeputte, P. and Suneetha, K.J. and Kaur, Rupinder and Mukherjee, P.K. and Chandra, J. and Ghannoum, M.A. and Sanglard, D. and Goswami, S.K. and Prasad, R. (2014) Novel role of a family of major facilitator transporters in biofilm development and virulence of Candida albicans. Biochemical journal, 460 (2). pp. 223-235. ISSN 1470-8728

Sharma, V. and Nandineni, M.R. (2014) Assessment of genetic diversity among Indian potato (Solanum tuberosum L.) collection using microsatellite and retrotransposon based marker systems. Molecular Phylogenetics and Evolution, 73. pp. 10-7. ISSN 1095-9513

Shashni, R. and Qayyum, M.Z. and Vishalini, V. and Dey, D. and Sen, Ranjan (2014) Redundancy of primary RNA-binding functions of the bacterial transcription terminator Rho. Nucleic Acids Research, 42 (15). pp. 9677-9690. ISSN 0305-1048

Singh, C.P. and Singh, J. and Nagaraju, J. (2014) bmnpv-miR-3 facilitates BmNPV infection by modulating the expression of viral P6.9 and other late genes in Bombyx mori. Insect Biochemistry and Molecular Biology, 49. pp. 59-69. ISSN 1879-0240

Singh, C.P. and Vaishna, L. and Kakkar, Akanksha and Arunkumar, K.P. and Nagaraju, J. (2014) Characterization of antiviral and antibacterial activity of Bombyx mori seroin proteins. Cellular Microbiology, 16 (9). pp. 1354-1365. ISSN 1462-5822

Sinha, A. and Nagarajaram, H.A. (2014) Nodes occupying central positions in human tissue specific PPI networks are enriched with many splice variants. Proteomics, 14 (20). pp. 2242-2248. ISSN 1615-9853

Sreejit, G. and Ahmed, A. and Parveen, N. and Jha, V. and Valluri, V.L. and Ghosh, S. and Mukhopadhyay, Sangita (2014) The ESAT-6 Protein of Mycobacterium tuberculosis Interacts with Beta-2-Microglobulin (β2M) Affecting Antigen Presentation Function of Macrophage. PLoS Pathogens, 10 (10). e1004446. ISSN 1553-7374

Srivastava, V.K. and Suneetha, K.J. and Kaur, Rupinder (2014) A systematic analysis reveals an essential role for high-affinity iron uptake system, haemolysin and CFEM domain-containing protein in iron homoeostasis and virulence in Candida glabrata. Biochemical Journal, 463 (1). pp. 103-114. ISSN 0264-6021

Stephen, J. and Shukla, A. and Dalal, Ashwin and Girisha, K.M. and Shah, H. and Gupta, N. and Kabra, M. and Dabadghao, P. and Phadke, S.R. (2014) Mutation spectrum of COL1A1 and COL1A2 genes in Indian patients with osteogenesis imperfecta. American Journal of Medical Genetics. Part A, 164A (6). pp. 1482-1489. ISSN 1552-4833

Sundaram, R.M. and Chatterjee, Subhadeep and Oliva, R. and Laha, G. and Cruz, C. and Leach, J.E. and Sonti, R.V. (2014) Update on Bacterial Blight of Rice: Fourth International Conference on Bacterial Blight. Rice, 7 (1). p. 12. ISSN 1939-8433

Tsurusaki, Y. and Okamoto, N. and Ohashi, H. and Mizuno, S. and Matsumoto, N. and Makita, Y. and Fukuda, M. and Isidor, B. and Perrier, J. and Aggarwal, Shagun and Dalal, Ashwin and Al-Kindy, A. and Liebelt, J. and Mowat, D. and Nakashima, M. and Saitsu, H. and Miyake, N. and Matsumoto, N. (2014) Coffin-Siris syndrome is a SWI/SNF complex disorder. Clinical Genetics, 85 (6). pp. 548-554. ISSN 1399-0004