Article

Akhter, Y. and Ehebauer, M.T. and Mukhopadhyay, Sangita and Hasnain, S.E. (2012) The PE/PPE multigene family codes for virulence factors and is a possible source of mycobacterial antigenic variation: Perhaps more? Biochimie, 94 (1). pp. 110-116. ISSN 0300-9084

Suragani, M. and Rasheedi, S. and Hasnain, S.E. and Ehtesham, N.Z. (2011) The translation initiation factor, PeIF5B, from Pisum sativum displays chaperone activity. Biochemical and Biophysical Research Communications, 414 (2). pp. 390-396. ISSN 0006-291X

Krishnaveni, M. and Sahdev, S. and Hasnain, S.E. (2011) Baculovirus p35 gene is oppositely regulated by P53 and AP-1 like factors in Spodoptera frugiperda. Biochemical and Biophysical Research Communications, 414 (4). pp. 688-693. ISSN 0006-291X

Sharadamma, N. and Khan, K. and Kumar, S. and Patil, K.N. and Hasnain, S.E. and Muniyappa, K. (2011) Synergy between the N-terminal and C-terminal domains of Mycobacterium tuberculosis HupB is essential for high-affinity binding, DNA supercoiling and inhibition of RecA-promoted strand exchange. FEBS Journal, 278 (18). pp. 3447-3462. ISSN 1742-464X

Kumar, S. and Sardesai, A.A. and Basu, D. and Muniyappa, K. and Hasnain, S.E. (2010) DNA Clasping by Mycobacterial HU: The C-Terminal Region of HupB Mediates Increased Specificity of DNA Binding. PLoS ONE, 5 (9). e12551. ISSN 1932-6203

Bashir, N. and Kounsar, F. and Mukhopadhyay, Sangita and Hasnain, S.E. (2010) Mycobacterium tuberculosisconserved hypothetical protein rRv2626c modulates macrophage effector functions. Immunology, 130 (1). pp. 34-45. ISSN 0019-2805

Kumar, P. and Joshi, D.C. and Akif, M. and Akhter, Y. and Hasnain, S.E. and Mande, S.C. (2010) Mapping Conformational Transitions in Cyclic AMP Receptor Protein: Crystal Structure and Normal-Mode Analysis of Mycobacterium tuberculosis apo-cAMP Receptor Protein. Biophysical Journal, 98 (2). pp. 305-314. ISSN 0006-3495

Nair, S. and Ramaswamy, P.A. and Ghosh, S. and Joshi, D.C. and Pathak, N. and Siddiqui, I. and Sharma, P. and Hasnain, S.E. and Mande, S.C. and Mukhopadhyay, Sangita (2009) The PPE18 of Mycobacterium tuberculosis Interacts with TLR2 and Activates IL-10 Induction in Macrophage. The Journal of Immunology, 183 (10). pp. 6269-6281. ISSN 0022-1767

Rasheedi, S. and Suragani, M. and Haq, S.K. and Ghosh, S. and Ehtesham, N.Z. and Hasnain, S.E. (2009) Biophysical characterization and unfolding of LEF4 factor of RNA polymerase fromAcNPV. Biopolymers, 91 (7). pp. 574-582. ISSN 0006-3525

Kumar, M.S. and Ramachandran, A. and Hasnain, S.E. and Bashyam, M.D. (2009) Octamer and heat shock elements regulate transcription from the AcMNPV polyhedrin gene promoter. Archives of Virology, 154 (3). pp. 445-456. ISSN 0304-8608

Kumar, S. and Farhana, A. and Hasnain, S.E. (2009) In-Vitro Helix Opening of M. tuberculosis oriC by DnaA Occurs at Precise Location and Is Inhibited by IciA Like Protein. PLoS ONE, 4 (1). e4139. ISSN 1932-6203

Ahmed, N. and Ehtesham, N.Z. and Hasnain, S.E. (2009) Ancestral Mycobacterium tuberculosis genotypes in India: Implications for TB control programmes. Infection, Genetics and Evolution, 9 (1). pp. 142-146. ISSN 1567-1348

Tundup, S. and Pathak, Niteen and Ramanadham, M. and Mukhopadhyay, Sangita and Murthy, K.J.R. and Ehtesham, N.Z. and Hasnain, S.E. (2008) The Co-Operonic PE25/PPE41 Protein Complex of Mycobacterium tuberculosis Elicits Increased Humoral and Cell Mediated Immune Response. PLoS ONE, 3 (10). e3586. ISSN 1932-6203

Khan, N. and Alam, K. and Mande, S.C. and Valluri, V.L. and Hasnain, S.E. and Mukhopadhyay, Sangita (2008) Mycobacterium tuberculosisheat shock protein 60 modulates immune response to PPD by manipulating the surface expression of TLR2 on macrophages. Cellular Microbiology, 10 (8). pp. 1711-1722. ISSN 1462-5814

Davis, D. and Farhana, A. and Kumar, S. and Rathore, S.S. and Ghosh, P.C. and Ehtesham, N.Z. and Tyagi, Anil K. and Hasnain, S.E. (2008) Mechanistic Insights into a Novel Exporter-Importer System of Mycobacterium tuberculosis Unravel Its Role in Trafficking of Iron. PLoS One, 3 (5). e2087. ISSN 1932-6203

Ahmed, N. and Dobrindt, U. and Hacker, J. and Hasnain, S.E. (2008) Genomic fluidity and pathogenic bacteria: applications in diagnostics, epidemiology and intervention. Nature Reviews Microbiology, 6 (5). pp. 387-394. ISSN 1740-1526

Akhter, T. and Yellaboina, S. and Farhana, A. and Ranjan, Akash and Ahmed, N. and Hasnain, S.E. (2008) Genome scale portrait of cAMP-receptor protein (CRP) regulons in mycobacteria points to their role in pathogenesis. Gene, 407 (1-2). pp. 148-158. ISSN 1932-6203

Ahmed, N. and Saini, V. and Raghuvanshi, S. and Khurana, J.P. and Tyagi, Akhilesh K. and Tyagi, Anil K. and Hasnain, S.E. (2007) Molecular Analysis of a Leprosy Immunotherapeutic Bacillus Provides Insights into Mycobacterium Evolution. PLoS ONE, 2 (10). e968. ISSN 1932-6203

Rasheedi, S. and Ramachandran, A. and Ehtesham, N.Z. and Hasnain, S.E. (2007) Biochemical characterization of Sf9 Sp-family-like protein factors reveals interesting features. Archives of Virology, 152 (10). pp. 1819-1828. ISSN 0304-8608

Akhter, Y. and Tundup, S. and Hasnain, S.E. (2007) Novel biochemical properties of a CRP/FNR family transcription factor from Mycobacterium tuberculosis. International Journal of Medical Microbiology, 297 (6). pp. 451-457. ISSN 1438-4221

Rasheedi, S. and Ghosh, S. and Suragani, M. and Tuteja, N. and Sopory, S.K. and Hasnain, S.E. and Ehtesham, N.Z. (2007) Pisum sativum contains a factor with strong homology to eIF5B. Gene, 399 (2). pp. 144-151. ISSN 0378-1119

Aparna, D. and Kenchappa, P. and Sharma, S. and Peeters, J.K. and Ahmed, N. and Garg, P. and Das, T.P. and Hasnain, S.E. (2007) High-Resolution Genome Profiling DifferentiatedStaphylococcus epidermidisIsolated from Patients with Ocular Infections and Normal Individuals. Investigative Opthalmology & Visual Science, 48 (7). pp. 3239-3245. ISSN 1552-5783

Banerjee, S. and Nandyala, A.K. and Raviprasad, P. and Ahmed, N. and Hasnain, S.E. (2007) Iron-Dependent RNA-Binding Activity of Mycobacterium tuberculosis Aconitase. Journal of Bacteriology, 189 (11). pp. 4046-4052. ISSN 0021-9193

Khan, N. and Ghousunnissa, S. and Jegadeeswaran, S.M. and Thiagarajan, D. and Hasnain, S.E. and Mukhopadhyay, Sangita (2007) Anti-B7-1/B7-2 antibody elicits innate-effector responses in macrophages through NF- B-dependent pathway. International Immunology, 19 (4). pp. 477-486. ISSN 0953-8178

Boddupalli, C.S. and Ghosh, S. and Rahim, S.C. and Nair, S. and Ehtesham, N.Z. and Hasnain, S.E. and Mukhopadhyay, Sangita (2007) Nitric oxide inhibits interleukin-12 p40 through p38 MAPK-mediated regulation of calmodulin and c-rel. Free Radical Biology and Medicine, 42 (5). pp. 686-697. ISSN 0891-5849

Vidyasagar, M. and Hasnain, S.E. and Mande, S.C. and Nagarajaram, H.A. and Ranjan, Akash and Acharya, M.S. and Anwaruddin, M. and Arun, S.K. and Gyanrajkumar, and Kumar, D. and Priya, S. and Ranjan, S. and Reddi, B.R. and Seshadri, J. and Sravan Kumar, P. and Swaminathan, S. and Uma Devi, P. and Vindal, V. and Vijaykrishnan, S. (2007) BioSuite: A comprehensive bioinformatics software package (A unique industry-academia collaboration). Current Science, 92 (1). pp. 29-38. ISSN 0011-3891

Mukhopadhyay, Sangita and Nair, S. and Hasnain, S.E. (2007) Nitric Oxide: Friendly Rivalry in Tuberculosis. Current Signal Transduction Therapy, 2 (2). pp. 121-128. ISSN 1574-3624

Achary, M.S. and Reddy, A.B.M. and Chakrabarti, S. and Panicker, S.G. and Mandal, A.K. and Ahmed, N. and Balasubramanian, D. and Hasnain, S.E. and Nagarajaram, H.A. (2006) Disease-Causing Mutations in Proteins: Structural Analysis of the CYP1b1 Mutations Causing Primary Congenital Glaucoma in Humans. Biophysical Journal, 91 (12). pp. 4329-4339. ISSN 0006-3495

Kashyap, V.K. and Guha, S. and Sitalaximi, T. and Hima Bindu, G. and Hasnain, S.E. and Trivedi, R. (2006) Genetic structure of Indian populations based on fifteen autosomal microsatellite loci. BMC Genetics, 7 (1). p. 28. ISSN 1471-2156

Akif, M. and Akhter, Y. and Hasnain, S.E. and Mande, S.C. (2006) Crystallization and preliminary X-ray crystallographic studies ofMycobacterium tuberculosisCRP/FNR family transcription regulator. Acta Crystallographica Section F Structural Biology and Crystallization Communications, 62 (9). pp. 873-875. ISSN 1744-3091

Gutierrez, M.C. and Ahmed, N. and Willery, E. and Narayanan, S. and Hasnain, S.E. and Chauhan, D.S. and Katoch, V.M. and Vincent, V. and Locht, C. and Supply, P. (2006) Predominance of Ancestral Lineages ofMycobacterium tuberculosisin India. Emerging Infectious Diseases, 12 (7). pp. 1367-1374. ISSN 1080-6040

Qamra, R. and Prakash, P. and Aruna, B. and Hasnain, S.E. and Mande, S.C. (2006) The 2.15 Å Crystal Structure ofMycobacterium tuberculosisChorismate Mutase Reveals an Unexpected Gene Duplication and Suggests a Role in Host−Pathogen Interactions†. Biochemistry, 45 (23). pp. 6997-7005. ISSN 0006-2960

Tundup, S. and Akhter, Y. and Thiagarajan, D. and Hasnain, S.E. (2006) Clusters of PE and PPE genes of Mycobacterium tuberculosis are organized in operons: Evidence that PE Rv2431c is co-transcribed with PPE Rv2430c and their gene products interact with each other. FEBS Letters, 580 (5). pp. 1285-1293. ISSN 0014-5793

Khan, N. and Rahim, S.S. and Boddupalli, C.S. and Ghousunnissa, S. and Padma, S. and Pathak, Niteen and Thiagarajan, D. and Hasnain, S.E. and Mukhopadhyay, Sangita (2006) Hydrogen peroxide inhibits IL-12 p40 induction in macrophages by inhibiting c-rel translocation to the nucleus through activation of calmodulin protein. Blood, 107 (4). pp. 1513-1520. ISSN 0006-4971

Kenchappa, P. and Aparna, D. and Ahmed, N. and Pathengay, A. and Das, T.P. and Hasnain, S.E. and Sharma, S. (2006) Fluorescent amplified fragment length polymorphism (FAFLP) genotyping demonstrates the role of biofilm-producing methicillin-resistant periocular Staphylococcus epidermidis strains in postoperative endophthalmitis. BMC Ophthalmology, 6 (1). p. 1. ISSN 14712415

Rao, K.R. and Ahmed, N. and Srinivas, S. and Sechi, L.A. and Hasnain, S.E. (2006) Rapid Identification of Mycobacterium tuberculosis Beijing Genotypes on the Basis of the Mycobacterial Interspersed Repetitive Unit Locus 26 Signature. Journal of Clinical Microbiology, 44 (1). pp. 274-277. ISSN 0095-1137

Kazim, S.N. and Sarin, S.K. and Sharma, B.C. and Khan, L.A. and Hasnain, S.E. (2006) Characterization of Naturally Occurring and Lamivudine-Induced Surface Gene Mutants of Hepatitis B Virus in Patients with Chronic Hepatitis B in India. Intervirology, 49 (3). pp. 152-160. ISSN 0300-5526

Kenchappa, P. and Sangwan, V.S. and Ahmed, N. and Rao, K.R. and Pathengay, A. and Mathai, A. and Mansoori, T. and Das, T.P. and Hasnain, S.E. and Sharma, S. (2005) High-resolution genotyping of Pseudomonas aeruginosa strains linked to acute post cataract surgery endophthalmitis outbreaks in India. Annals of Clinical Microbiology and Antimicrobials, 4 (1). p. 19. ISSN 1476-0711

Rao, K.R. and Kauser, F. and Srinivas, S. and Zanetti, S. and Sechi, L.A. and Ahmed, N. and Hasnain, S.E. (2005) Analysis of genomic downsizing on the basis of region-of-difference polymorphism profiling of Mycobacterium tuberculosis patient isolates reveals geographic partitioning. Journal of Clinical Microbiology, 43 (12). pp. 5978-5982. ISSN 0095-1137

Banerjee, S. and Nandyala, A.K. and Raviprasad, P. and Katoch, V. and Hasnain, S.E. (2005) Comparison of Mycobacterium tuberculosis isocitrate dehydrogenases (ICD-1 and ICD-2) reveals differences in coenzyme affinity, oligomeric state, pH tolerance and phylogenetic affiliation. BMC Biochemistry, 6 (1). p. 20. ISSN 1471-2091

Sah, N.K. and Singh, S.N.P. and Sahdev, S. and Banerji, S. and Jha, V. and Khan, Z. and Hasnain, S.E. (2005) Indian herb 'Sanjeevani' (Selaginella bryopteris) can promote growth and protect against heat shock and apoptotic activities of ultra violet and oxidative stress. Journal of Biosciences, 30 (4). pp. 499-505. ISSN 0250-5991

Prakash, P. and Pathak, Niteen and Hasnain, S.E. (2005) pheA (Rv3838c) of Mycobacterium tuberculosis Encodes an Allosterically Regulated Monofunctional Prephenate Dehydratase That Requires Both Catalytic and Regulatory Domains for Optimum Activity. Journal of Biological Chemistry, 280 (21). pp. 20666-20671. ISSN 0021-9258

Prakash, P. and Aruna, B. and Sardesai, A.A. and Hasnain, S.E. (2005) Purified Recombinant Hypothetical Protein Coded by Open Reading Frame Rv1885c of Mycobacterium tuberculosis Exhibits a Monofunctional AroQ Class of Periplasmic Chorismate Mutase Activity. Journal of Biological Chemistry, 280 (20). pp. 19641-19648. ISSN 0021-9258

Prakash, P. and Yellaboina, S. and Ranjan, Akash and Hasnain, S.E. (2005) Computational prediction and experimental verification of novel IdeR binding sites in the upstream sequences of Mycobacterium tuberculosis open reading frames. Bioinformatics, 21 (10). pp. 2161-2166. ISSN 1367-4803

Qamra, R. and Prakash, P. and Aruna, B. and Hasnain, S.E. and Mande, S.C. (2005) Crystallization and preliminary X-ray crystallographic studies ofMycobacterium tuberculosischorismate mutase. Acta Crystallographica Section F Structural Biology and Crystallization Communications, 61 (5). pp. 473-475. ISSN 1744-3091

Kaur, K. and Reddy, A.B.M. and Mukhopadhyay, A. and Mandal, A.K. and Hasnain, S.E. and Ray, K. and Thomas, R. and Balasubramanian, D. and Chakrabarti, S. (2005) Myocilin gene implicated in primary congenital glaucoma. Clinical Genetics, 67 (4). pp. 335-340. ISSN 0009-9163

Rahim, S.S. and Khan, N. and Boddupalli, C.S. and Hasnain, S.E. and Mukhopadhyay, Sangita (2005) Interleukin-10 (IL-10) mediated suppression of IL-12 production in RAW 264.7 cells also involves c-rel transcription factor. Immunology, 114 (3). pp. 313-321. ISSN 0019-2805

Chakrabarti, S. and Kaur, K. and Sreelatha, K. and Acharya, M. and Devi, K.R. and Mukhopadhyay, A. and Mandal, A.K. and Hasnain, S.E. and Chandrasekhar, G. and Thomas, R. and Ray, K. (2005) Gln48His is the prevalent myocilin mutation in primary open angle and primary congenital glaucoma phenotypes in India. Molecular Vision, 11. pp. 111-3. ISSN 1090-0535

Bashyam, M.D. and Hasnain, S.E. (2004) The extracytoplasmic function sigma factors: role in bacterial pathogenesis. Infection, Genetics and Evolution, 4 (4). pp. 301-308. ISSN 1567-1348

Chakhaiyar, P. and Nagalakshmi, Y. and Aruna, B. and Murthy, K.J.R. and Katoch, V.M. and Hasnain, S.E. (2004) Regions of High Antigenicity within the Hypothetical PPE Major Polymorphic Tandem Repeat Open‐Reading Frame, Rv2608, Show a Differential Humoral Response and a Low T Cell Response in Various Categories of Patients with Tuberculosis. The Journal of Infectious Diseases, 190 (7). pp. 1237-1244. ISSN 0022-1899

Ahmed, N. and Hasnain, S.E. (2004) Genomics of Mycobacterium tuberculosis: old threats & new trends. The Indian Journal of Medical Research, 120 (4). pp. 207-212. ISSN 0971-5916

Reddy, A.B.M. and Kaur, K. and Mandal, A.K. and Panicker, S.G. and Thomas, R. and Hasnain, S.E. and Balasubramanian, D. and Chakrabarti, S. (2004) Mutation spectrum of the CYP1B1 gene in Indian primary congenital glaucoma patients. Molecular vision, 10. pp. 696-702. ISSN 1090-0535

Yellaboina, S. and Ranjan, Sarita and Chakhaiyar, P. and Hasnain, S.E. and Ranjan, Akash (2004) Prediction of DtxR regulon: Identification of binding sites and operons controlled by Diphtheria toxin repressor in Corynebacterium diphtheriae. BMC Microbiology, 4 (1). p. 38. ISSN 1471-2180

Hasnain, S.E. and Ahmed, N. (2004) Leptospirosis. The Lancet Infectious Diseases, 4 (9). p. 543. ISSN 1473-3099

Ghosh, S. and Rasheedi, S. and Rahim, S.S. and Banerjee, S. and Choudhary, R.K. and Chakhaiyar, P. and Ehtesham, N.Z. and Mukhopadhyay, Sangita and Hasnain, S.E. (2004) Method for enhancing solubility of the expressed recombinant proteins in Escherichia coli. BioTechniques, 37 (3). 418, 420, 422-433. ISSN 0736-6205

Banerjee, S. and Ashok, N. and Raviprasad, P. and Katoch, V.M. and Murthy, K.J.R. and Hasnain, S.E. (2004) Mycobacterium tuberculosis (Mtb) isocitrate dehydrogenases show strong B cell response and distinguish vaccinated controls from TB patients. Proceedings of the National Academy of Sciences, 101 (34). pp. 12652-12657. ISSN 0027-8424

Choudhary, R.K. and Pullakhandam, R. and Ehtesham, N.Z. and Hasnain, S.E. (2004) Expression and characterization of Rv2430c, a novel immunodominant antigen of Mycobacterium tuberculosis. Protein Expression and Purification, 36 (2). pp. 249-253. ISSN 1046-5928

Vijayachari, P. and Ahmed, N. and Sugunan, A.P. and Ghousunnissa, S. and Rao, K.R. and Hasnain, S.E. and Sehgal, S.C. (2004) Use of Fluorescent Amplified Fragment Length Polymorphism for Molecular Epidemiology of Leptospirosis in India. Journal of Clinical Microbiology, 42 (8). pp. 3575-3580. ISSN 0095-1137

Ahmad, R. and Kamra, A. and Hasnain, S.E. (2004) Fibroin Silk Proteins from the Nonmulberry SilkwormPhilosamia riciniAre Biochemically and Immunochemically Distinct from Those of the Mulberry SilkwormBombyx mori. DNA and Cell Biology, 23 (3). pp. 149-154. ISSN 1044-5498

Chakhaiyar, P. and Hasnain, S.E. (2004) Defining the Mandate of Tuberculosis Research in a Postgenomic Era. Medical Principles and Practice, 13 (4). pp. 177-184. ISSN 1011-7571

Ahmed, N. and Alam, M. and Rao, K.R. and Kauser, F. and Kumar, N.A. and Qazi, N.N. and Sangal, V. and Sharma, V.D. and Das, R. and Katoch, V.M. and Murthy, K.J.R. and Suneetha, S. and Sharma, S.K. and Sechi, L.A. and Gilman, R.H. and Hasnain, S.E. (2004) Molecular Genotyping of a Large, Multicentric Collection of Tubercle Bacilli Indicates Geographical Partitioning of Strain Variation and Has Implications for Global Epidemiology of Mycobacterium tuberculosis. Journal of Clinical Microbiology, 42 (7). pp. 3240-3247. ISSN 0095-1137

Venkaiah, B. and Viswanathan, P. and Habib, S. and Hasnain, S.E. (2004) An Additional Copy of the Homologous Region (hr1) Sequence in theAutographa californicaMultinucleocapsid Polyhedrosis Virus Genome Promotes Hyperexpression of Foreign Genes†. Biochemistry, 43 (25). pp. 8143-8151. ISSN 0006-2960

Mukhopadhyay, Sangita and Srivastava, V.M.L. and Murthy, P.K. and Hasnain, S.E. (2004) Poorer NF-κB signaling by microfilariae in macrophages from BALB/c mice affects their ability to produce cytotoxic levels of nitric oxide to kill microfilariae. FEBS Letters, 567 (2-3). pp. 275-280. ISSN 0014-5793

Panicker, S.G. and Mandal, A.K. and Reddy, A.B.M. and Gothwal, V.K. and Hasnain, S.E. (2004) Correlations of Genotype with Phenotype in Indian Patients with Primary Congenital Glaucoma. Investigative Opthalmology & Visual Science, 45 (4). pp. 1149-1156. ISSN 1552-5783

Siddiqi, N. and Das, R. and Pathak, Niteen and Banerjee, S. and Ahmed, N. and Katoch, V.M. and Hasnain, S.E. (2004) Mycobacterium tuberculosis isolate with a distinct genomic identity overexpresses a tap-like efflux pump. Infection, 32 (2). pp. 109-111. ISSN 0300-8126

Majeed, A.A. and Ahmed, N. and Rao, K.R. and Ghousunnissa, S. and Kauser, F. and Bose, B. and Nagarajaram, H.A. and Katoch, V.M. and Cousins, D.V. and Sechi, L.A. and Gilman, R.H. and Hasnain, S.E. (2004) AmpliBASE MTTM: a Mycobacterium tuberculosis diversity knowledgebase. Bioinformatics, 20 (6). pp. 989-992. ISSN 1367-4803

Aparna, G. and Bhuyan, A.K. and Sahdev, S. and Hasnain, S.E. and Kaufman, R.J. and Ramaiah, K.V.A. (2003) Stress-Induced Apoptosis in Spodoptera frugiperda(Sf9) Cells: Baculovirus p35 Mitigates eIF2α Phosphorylation. Biochemistry, 42 (51). pp. 15352-15360. ISSN 0006-2960

Ali, S. and Hasnain, S.E. (2003) Genomics of the human Y-chromosome: 1. Association with male infertility. Gene, 321. pp. 25-37. ISSN 0378-1119

Choudhary, R.K. and Mukhopadhyay, Sangita and Chakhaiyar, P. and Sharma, N. and Murthy, K.J.R. and Katoch, V.M. and Hasnain, S.E. (2003) PPE Antigen Rv2430c of Mycobacterium tuberculosis Induces a Strong B-Cell Response. Infection and Immunity, 71 (11). pp. 6338-6343. ISSN 0019-9567

Viswanathan, P. and Venkaiah, B. and Kumar, M.S. and Rasheedi, S. and Vrati, S. and Bashyam, M.D. and Hasnain, S.E. (2003) The Homologous Region Sequence (hr1) of Autographa californica Multinucleocapsid Polyhedrosis Virus Can Enhance Transcription from Non-baculoviral Promoters in Mammalian Cells. Journal of Biological Chemistry, 278 (52). pp. 52564-52571. ISSN 0021-9258

Reddy, A.B.M. and Panicker, S.G. and Mandal, A.K. and Hasnain, S.E. and Balasubramanian, D. (2003) Identification of R368H as a PredominantCYP1B1Allele Causing Primary Congenital Glaucoma in Indian Patients. Investigative Opthalmology & Visual Science, 44 (10). p. 4200. ISSN 1552-5783

Sahdev, S. and Taneja, T.K. and Mohan, M. and Sah, N.K. and Khar, A.K. and Hasnain, S.E. and Athar, M. (2003) Baculoviral p35 inhibits oxidant-induced activation of mitochondrial apoptotic pathway. Biochemical and Biophysical Research Communications, 307 (3). pp. 483-490. ISSN .0006-291X

Mohan, M. and Taneja, T.K. and Sahdev, S. and Krishnaveni, M. and Begum, R. and Athar, M. and Sah, N.K. and Hasnain, S.E. (2003) Antioxidants prevent UV-induced apoptosis by inhibiting mitochondrial cytochrome c release and caspase activation in Spodoptera frugiperda (Sf9) cells. Cell Biology International, 27 (6). pp. 483-490. ISSN 1065-6995

Ahmed, N. and Caviedes, L. and Alam, M. and Rao, K.R. and Sangal, V. and Sheen, P. and Gilman, R.H. and Hasnain, S.E. (2003) Distinctiveness of Mycobacterium tuberculosis Genotypes from Human Immunodeficiency Virus Type 1-Seropositive and -Seronegative Patients in Lima, Peru. Journal of Clinical Microbiology, 41 (4). pp. 1712-1716. ISSN 0095-1137

Hasnain, S.E. and Begum, R. and Ramaiah, K.V.A. and Sahdev, S. and Shajil, E.M. and Taneja, T.K. and Mohan, M. and Athar, M. and Sah, N.K. and Krishnaveni, M. (2003) Host-pathogen interactions during apoptosis. Journal of Biosciences, 28 (3). pp. 349-358. ISSN 0250-5991

Ahmed, N. and Alam, M. and Majeed, A.A. and Rahman, S.A. and Cataldi, A. and Cousins, D. and Hasnain, S.E. (2003) Genome sequence based, comparative analysis of the fluorescent amplified fragment length polymorphisms (FAFLP) of tubercle bacilli from seals provides molecular evidence for a new species within the Mycobacterium tuberculosis complex. Infection, Genetics and Evolution, 2 (3). pp. 193-199. ISSN 1567-1348

Bashyam, M.D. and Hasnain, S.E. (2003) The human genome sequence: impact on health care. Indian Journal of Medical Research, 117. pp. 43-65. ISSN 0971-5916

Hasnain, S.E. (2003) Molecular epidemiology of infectious diseases: a case for increased surveillance. Bulletin of the World Health Organization, 81 (7). p. 474. ISSN 0042-9686

Panicker, S.G. and Sampath, S. and Mandal, A.K. and Reddy, A.B.M. and Ahmed, N. and Hasnain, S.E. (2002) Novel mutation in FOXC1 wing region causing Axenfeld-Rieger anomaly. Investigative Ophthalmology & Visual Science, 43 (12). pp. 3613-3616. ISSN 0146-0404

Ghosh, S. and Parvez , M.K. and Banerjee, K. and Sarin, S.K. and Hasnain, S.E. (2002) Baculovirus as Mammalian Cell Expression Vector for Gene Therapy: An Emerging Strategy. Molecular Therapy, 6 (1). pp. 5-11. ISSN 1525-0016

Panicker, S.G. and Reddy, A.B.M. and Mandal, A.K. and Ahmed, N. and Nagarajaram, H.A. and Hasnain, S.E. and Balasubramanian, D. (2002) Identification of novel mutations causing familial primary congenital glaucoma in Indian pedigrees. Investigative Ophthalmology & Visual Science, 43 (5). pp. 1358-66. ISSN 0146-0404

Nagaraju, J. and Kathirvel, M. and Kumar, R.R. and Siddiq, E.A. and Hasnain, S.E. (2002) Genetic analysis of traditional and evolved Basmati and non-Basmati rice varieties by using fluorescence-based ISSR-PCR and SSR markers. Proceedings of the National Academy of Sciences, 99 (9). pp. 5836-5841. ISSN 0027-8424

Kazim, S.N. and Wakil, S.M. and Khan, L.A. and Hasnain, S.E. and Sarin, S.K. (2002) Vertical transmission of hepatitis B virus despite maternal lamivudine therapy. Lancet, 359 (9316). pp. 1488-9. ISSN 0140-6736

Siddiqi, N. and Shamim, M. and Hussain, S. and Choudhary, R.K. and Ahmed, N. and Prachee, and Banerjee, S. and Savithri, G.R. and Alam, M. and Pathak, Niteen and Amin, A. and Hanief, M. and Katoch, V.M. and Sharma, S.K. and Hasnain, S.E. (2002) Molecular characterization of multidrug-resistant isolates of Mycobacterium tuberculosis from patients in North India. Antimicrobial Agents and Chemotherapy, 46 (2). pp. 443-50. ISSN 0066-4804

Ali, S. and Hasnain, S.E. (2002) Molecular dissection of the human Y-chromosome. Gene, 283 (1-2). pp. 1-10. ISSN 0378-1119

Ata-ur-Rasheed, M. and Vemuganti, G.K. and Honavar, S.G. and Ahmed, N. and Hasnain, S.E. and Kannabiran, C. (2002) Mutational analysis of the RB1 gene in Indian patients with retinoblastoma. Ophthalmic Genetics, 23 (2). pp. 121-128. ISSN 1381-6810

Wakil, S.M. and Kazim, S.N. and Khan, L.A. and Raisuddin, S. and Parvez, M.K. and Guptan, R.C. and Thakur, V. and Hasnain, S.E. and Sarin, S.K. (2002) Prevalence and profile of mutations associated with lamivudine therapy in Indian patients with chronic hepatitis B in the surface and polymerase genes of hepatitis B virus. Journal of Medical Virology, 1 (2). p. 62. ISSN 0146-6615

Parvez, M.K. and Thakur, V. and Kazim, S.N. and Guptan, R.C. and Hasnain, S.E. and Sarin, S.K. (2001) Base-pair alterations in the epsilon-lower stem due to a novel double substitution in the precore gene of HBV-e negative variant were recovered by secondary mutations. Virus Genes, 23 (3). pp. 315-320. ISSN 0920-8569

Hasnain, S.E. (2001) MEEGID-V: Fifth international meeting on molecular epidemiology and evolutionary genetics in infectious diseases. Infection, Genetics and Evolution, 1 (2). pp. 167-170.

Ramachandran, A. and Bashyam, M.D. and Viswanathan, P. and Ghosh, S. and Kumar, M.S. and Hasnain, S.E. (2001) The bountiful and baffling baculovirus: The story of polyhedrin transcription. Current Science, 81 (8). pp. 998-1010. ISSN 0011-3891

Kohli, A. and Gupta, V. and Krishnamurthy, S. and Hasnain, S.E. and Prasad, R. (2001) Specificity of drug transport mediated by CaMDR1: a major facilitator of Candida albicans. Journal of Biosciences, 26 (3). pp. 333-9. ISSN 0250-5991

Ramachandran, A. and Jain, A. and Arora, P. and Bashyam, M.D. and Chatterjee, U. and Ghosh, S. and Parnaik, V.K. and Hasnain, S.E. (2001) Novel Sp Family-like Transcription Factors Are Present in Adult Insect Cells and Are Involved in Transcription from the Polyhedrin Gene Initiator Promoter. Journal of Biological Chemistry, 276 (26). pp. 23440-23449. ISSN 0021-9258

Srinivas, V.R. and Bachhawat-Sikder, K. and Habib, S. and Hasnain, S.E. and Surolia, A. (2001) Expression of winged bean basic agglutinin in Spodoptera frugiperda insect cell expression system. Bioscience Reports, 21 (3). pp. 361-367. ISSN 0144-8463

Siddiqi, N. and Shamim, M. and Amin, A. and Chauhan, D.S. and Das, R. and Srivastava, K. and Singh, D. and Sharma, V.D. and Katoch, V.M. and Sharma, S.K. and Hanief, M. and Hasnain, S.E. (2001) Typing of drug resistant isolates of Mycobacterium tuberculosis from India using the IS6110 element reveals substantive polymorphism. Infection, Genetics and Evolution, 1 (2). pp. 109-116. ISSN 1567-1348

Sudhakar, A. and Ramachandran, A. and Ghosh, S. and Hasnain, S.E. and Kaufman, R.J. and Ramaiah, K.V.A. (2000) Phosphorylation of Serine 51 in Initiation Factor 2α (eIF2α) Promotes Complex Formation between eIF2α(P) and eIF2B and Causes Inhibition in the Guanine Nucleotide Exchange Activity of eIF2B†. Biochemistry, 39 (42). pp. 12929-12938. ISSN 0006-2960

Raman, L.A. and Siddiqi, N. and Shamim, M. and Deb, M. and Mehta, G. and Hasnain, S.E. (2000) Molecular characterization of Mycobacterium abscessus strains isolated from a hospital outbreak. Emerging Infectious Diseases, 6 (5). pp. 561-562. ISSN 1080-6040

Kapoor, D. and Guptan, R.C. and Wakil, S.M. and Kazim, S.N. and Kaul, R. and Agarwal, S.R. and Raisuddin, S. and Hasnain, S.E. and Sarin, S.K. (2000) Beneficial effects of lamivudine in hepatitis B virus-related decompensated cirrhosis. Journal of Hepatology, 33 (2). pp. 308-312. ISSN 0168-8278

Shi, Ya Ping and Das, P. and Holloway, B. and Udhayakumar, V. and Tongren, J.E. and Candal, F. and Biswas, S. and Ahmad, S.R. and Hasnain, S.E. and Lal, A.A. (2000) Development, expression, and murine testing of a multistage Plasmodium falciparum malaria vaccine candidate. Vaccine, 18 (25). pp. 2902-2914. ISSN 0264-410X

Habib, S. and Hasnain, S.E. (2000) Differential Activity of Two Non-hr Origins during Replication of the Baculovirus Autographa californica Nuclear Polyhedrosis Virus Genome. Journal of Virology, 74 (11). pp. 5182-5189. ISSN 0022-538X

Shah, N.K. and Taneja , T.K. and Hasnain, S.E. (2000) Mitochondria can power cells to life and death. Resonance , 5 (4). pp. 74-84. ISSN 0971-8044

Rao, G.V. and Hasnain, S.E. (2000) The Centre for DNA Fingerprinting and Diagnostics: A synthesis of quality service and globally competitive science. Asia Pacific Journal of Biotechnology , 4 (6). pp. 114-117. ISSN 0219-0303

Bashyam, M.D. and Ghosh, S. and Ramachandran, A. and Viswanathan, P. and Hasnain, S.E. (2000) Multiple regulatory circuits for transcription from the polyhedrin gene promoter of the Autographa californica multiple nucleocapsid nuclear polyhedrosis virus. Proceedings of the Indian Natlonal Science Academy (PINSA), 66B (2-3). pp. 83-95. ISSN 0369-8211

Sudhakar, A. and Krishnamoorthy, T. and Jain, A. and Chatterjee, U. and Hasnain, S.E. and Kaufman, R.J. and Ramaiah, K.V.A. (1999) Serine 48 in initiation factor 2 alpha (eIF2 alpha) is required for high-affinity interaction between eIF2 alpha(P) and eIF2B. Biochemistry, 38 (46). pp. 15398-405. ISSN 0006-2960

Ali, S. and Hasnain, S.E. (1999) Conservation, management and documentation of livestock genetic resources and biodiversity: A biotechnology perspective. Current Science , 77 (9). pp. 1154-1158. ISSN 0011-3891

Sah, N.K. and Taneja, T.K. and Pathak, Niteen and Begum, R. and Athar, M. and Hasnain, S.E. (1999) The baculovirus antiapoptotic p35 gene also functions via an oxidant-dependent pathway. Proceedings of the National Academy of Sciences, 96 (9). pp. 4838-4843. ISSN 0027-8424

Book Section

Bashyam, M.D. and Hasnain, S.E. (2007) Array-Based Comparative Genomic Hybridization. Applications in Cancer and Tuberculosis. In: Bioarrays: From Basics to Diagnostics. Humana Press Inc, Totowa, N.J., USA, pp. 107-121. ISBN 978-1-58829-476-0

Nagarajaram, H.A. and Hasnain, S.E. (2003) Current Status of Post-Genomics Computational Biology. In: Computing and Information Sciences: Recent Trends. Narosa Publihing House. ISBN 978-81-7319-491-7

Conference or Workshop Item

Yellaboina, S. and Chakhaiyar, P. and Hasnain, S.E. and Ranjan, R. (2003) Computational prediction of DtxR regulon - a dissection of physiological process controlled by DtxR in Corynebacterium species. In: CSB 2003. Proceedings of the 2003 IEEE , 11-14 Aug. 2003 .