A

Adduri, R.S.R. and Katamoni, R. and Pandilla, R. and Madana, S.N. and Paripati, A.K. and Kotapalli, V. and Bashyam, M.D. (2014) TP53 Pro72 allele is enriched in oral tongue cancer and frequently mutated in esophageal cancer in India. PloS one, 9 (12). e114002. ISSN 1932-6203

Adduri, R.S.R. and Kotapalli, V. and Gupta, N.A. and Gowrishankar, S. and Srinivasulu, M. and Ali, M. and Rao, S. and Uppin, S.G. and Nayak, U.K. and Dhagam, S. and Mohana Vamsy, C. and Bashyam, M.D. (2014) P53 nuclear stabilization is associated with FHIT loss and younger age of onset in squamous cell carcinoma of oral tongue. BMC Clinical Pathology, 14 (1). p. 37. ISSN 1472-6890

Aggarwal, Shagun and Coutinho, M.F. and Dalal, Ashwin and Jain, S.J.M.N. and Prata, M.J. and Alves, S. (2014) Prenatal skeletal dysplasia phenotype in severe MLII alpha/beta with novel GNPTAB mutation. Gene, 542 (2). pp. 266-268. ISSN 1879-0038

Aggarwal, Shagun and Kar, A. and Bland, P. and Kelsell, D. and Dalal, Ashwin (2015) Novel ABCA12 mutations in harlequin ichthyosis: a journey from photo diagnosis to prenatal diagnosis. Gene, 556 (2). pp. 254-256. ISSN 1879-0038

Ahmed, A.S.N. and Khan, J.R. and Ganai, N.A. (1999) DNA amplification assay for rapid detection of bovine tubercle bacilli in semen. Animal Reproduction Science, 57 (1-2). pp. 15-21. ISSN 0378-4320

Archak, S. and Nagaraju, J. (2014) Computational analyses of protein coded by rice (Oryza sativa japonica) cDNA (GI: 32984786) indicate lectin like Ca(2+) binding properties for Eicosapenta Peptide Repeats (EPRs). Bioinformation, 10 (2). pp. 63-67. ISSN 0973-2063

B

Bashyam, M.D. and Chaudhary, A.K. and Kiran, M. and Nagarajaram, H.A. and Radha Rama Devi, A. and Ranganath, P. and Dalal, Ashwin and Bashyam, L. and Gupta, N. and Kabra, M. and Muranjan, M. and Puri, R.D. and Verma, I.C. and Nampoothiri, S. and Kadandale, J.S. (2014) Splice, insertion-deletion and nonsense mutations that perturb the phenylalanine hydroxylase transcript cause phenylketonuria in India. Journal of Cellular Biochemistry, 115 (3). pp. 566-74. ISSN 1097-4644

Bashyam, M.D. and Ghosh, S. and Ramachandran, A. and Viswanathan, P. and Hasnain, S.E. (2000) Multiple regulatory circuits for transcription from the polyhedrin gene promoter of the Autographa californica multiple nucleocapsid nuclear polyhedrosis virus. Proceedings of the Indian Natlonal Science Academy (PINSA), 66B (2-3). pp. 83-95. ISSN 0369-8211

Bashyam, M.D. and Kotapalli, V. and Raman, R. and Chaudhary, A.K. and Yadav, B.K. and Gowrishankar, S. and Uppin, S.G. and Kongara, R. and Sastry, R.A. and Mohana Vamsy, C. and Patnaik, S. and Rao, S. and Dsouza, S. and Desai, D.C. and Tester, A. (2015) Evidence for presence of mismatch repair gene expression positive Lynch syndrome cases in India. Molecular Carcinogenesis, 54 (12). pp. 1807-1814. ISSN 0899-1987

Bashyam, M.D. and Chaudhary, A.K. and Kiran, M. and Reddy, V. and Nagarajaram, H.A. and Dalal, Ashwin and Bashyam, L. and Sun, D. and Gupta, A. and Gupta, N. and Kabra, M. and Puri, R.D. and Radha Rama Devi, A. and Kapoor, S. and Danda, S. (2014) Molecular analyses of novel ASAH1 mutations causing Farber lipogranulomatosis: analyses of exonic splicing enhancer inactivating mutation. Clinical Genetics, 86 (6). pp. 530-538. ISSN 1399-0004

Basu, A. and Dasari, V. and Mishra, R.K. and Khosla, Sanjeev (2014) The CpG island encompassing the promoter and first exon of human DNMT3L gene is a PcG/TrX response element (PRE). PloS one, 9. e93561. ISSN 1932-6203

Bidchol, A.M. and Dalal, Ashwin and Shah, H. and Suryanarayana, S. and Nampoothiri, S. and Kabra, M. and Gupta, N. and Danda, S. and Gowrishankar, K. and Phadke, S.R. and Kapoor, S. and Kamate, M. and Verma, I.C. and Puri, R.D. and Sankar, V.H. and Radha Rama Devi, A. and Patil, S.J. and Ranganath, P. and Jain, S.J.M.N. and Agarwal, Meenal and Singh, Ankur and Mishra, P. and Tamhankar, P.M. and Gopinath, P.M. and Nagarajaram, H.A. and Satyamoorthy, K. and Girisha, K.M. (2014) GALNS Mutations in Indian Patients With Mucopolysaccharidosis IVA. American Journal of Medical Genetics Part A, 164A (11). pp. 2793-2801. ISSN 1552-4833

C

Chaudhary, Neelam and Subba Reddy, Maddika (2014) WWP2-WWP1 Ubiquitin Ligase Complex Coordinated by PPM1G Maintains the Balance between Cellular p73 and Delta Np73 Levels. Molecular and Cellular Biology, 34 (19). pp. 3754-3764. ISSN 0270-7306

Chhakchhuak, P.I.R. and Khatri, Ajay and Sen, Ranjan (2019) Mechanism of Action of Bacterial Transcription Terminator Rho. Proceedings of the Indian National Science Academy, 85 (1). pp. 157-168. ISSN 0370-0046

D

Das Bhowmik, A. and Rangaswamaiah, S. and Srinivas, G. and Dalal, Ashwin (2015) Molecular genetic analysis of trinucleotide repeat disorders (TRDs) in Indian population and application of repeat primed PCR. European journal of Medical Genetics, 58 (3). pp. 160-167. ISSN 1878-0849

Delma, C.R. and Somasundaram, S.T. and Srinivasan, G.P. and Khursheed, M. and Bashyam, M.D. and Aravindan, N. (2015) Fucoidan from Turbinaria conoides: a multifaceted 'deliverable' to combat pancreatic cancer progression. International Journal of Biological Macromolecules, 74. pp. 447-57. ISSN 1879-0003

Dutta, Usha and Hansmann, I. and Schlote, D. (2015) Molecular cytogenetic characterization of a familial pericentric inversion 3 associated with short stature. European Journal of Medical Genetics, 58 (3). pp. 154-159. ISSN 1878-0849

Dutta, Usha and Vempally, S. and Ranganath, P. and Dalal, Ashwin (2014) A novel combined 15q11.2 duplication and a bisatellited supernumerary marker derived from chromosome 22: molecular characterization of the marker. Gene, 539 (1). pp. 162-7. ISSN 1879-0038

G

Ganguli, S. and Shah, Akruti and Hamid, Aisha and Singh, Arpita and Ravichand, P. and Bhandari, Rashna (2020) A high energy phosphate jump - From pyrophospho-inositol to pyrophospho-serine. Advances in Biological Regulation, 75. p. 100662. ISSN 2212-4926

Gowrishankar, J. (2015) End of the Beginning: Elongation and Termination Features of Alternative Modes of Chromosomal Replication Initiation in Bacteria. PLOS Genetics, 11 (1). e1004909. ISSN 1553-7390

Gupta, A. and Uttarilli, Anusha and Dalal, Ashwin and Girisha, K.M. (2015) Hunter syndrome with late age of presentation: clinical description of a case and review of the literature. BMJ Case Reports, 2015. ISSN 1757-790X

H

Hegde, S.R. and Pal, K. and Mande, S.C. (2014) Differential enrichment of regulatory motifs in the composite network of protein-protein and gene regulatory interactions. BMC Systems Biology, 8. p. 26. ISSN 1752-0509

J

Jain, Sriyans and Gupta, Richa and Sen, Ranjan (2019) Rho-dependent transcription termination in bacteria recycles RNA polymerases stalled at DNA lesions. Nature Communications, 10. p. 1207. ISSN 2041-1723

Jangam Reddy, J.R. and Panigrahi, S. and Lotfi, K. and Yadav, M. and Subba Reddy, Maddika and Tripathi, A.K. and Sanyal, S. and Łos, M.J. (2014) Mapping of apoptin-interaction with BCR-ABL1, and development of apoptin-based targeted therapy. Oncotarget, 5 (16). pp. 7198-7211. ISSN 1949-2553

K

Kalyani, B.S. and Kunamneni, R. and Wal, Megha and Ranjan, Amitabh and Sen, Ranjan (2015) A NusG paralogue from Mycobacterium tuberculosis, Rv0639, has evolved to interact with ribosomal protein S10 (Rv0700) but not to function as a transcription elongation-termination factor. Microbiology (Reading, England), 161 (Pt 1). pp. 67-83. ISSN 1465-2080

Kumar, Kundan and Moirangthem, Romila and Kaur, Rupinder (2020) Histone H4 dosage modulates DNA damage response in the pathogenic yeast Candida glabrata via homologous recombination pathway. PLOS Genetics, 16 (3). e1008620. ISSN 1553-7404

M

Mahali, S.K. and Verma, N. and Manna, S.K. (2014) Advanced Glycation End Products Induce Lipogenesis: Regulation by Natural Xanthone through Inhibition of ERK and NF-kappa B. Journal of Cellular Physiology, 229 (12). pp. 1972-1980. ISSN 1097-4652

Manasa, C. and Bhandari, Rashna (2020) Back-Pyrophosphorylation Assay to Detect In Vivo InsP7-Dependent Protein Pyrophosphorylation in Mammalian Cells. Methods in Molecular Biology, 2091. pp. 93-105. ISSN 1064-3745

P

Pal, Kamalendu and Yadav, Malti and Jain, Sriyans and Ghosh, Biplab and Sen, Ranjan and Sen, Udayaditya (2019) Vibrio cholerae YaeO is a structural homologue of RNA chaperone Hfq that inhibits Rho-dependent transcription termination by dissociating its hexameric state. Journal of Molecular Biology, 431 (24). pp. 4749-4766. ISSN 0022-2836

Pandey, S.D. and Choudhury, Mitali and Yousuf, S. and Wheeler, P.R. and Gordon, S.V. and Ranjan, Akash and Sritharan, Manjula (2014) Iron-Regulated Protein HupB of Mycobacterium tuberculosis Positively Regulates Siderophore Biosynthesis and Is Essential for Growth in Macrophages. Journal of Bacteriology, 196 (10). pp. 1853-1865. ISSN 0021-9193

Pathania, A. and Sardesai, A.A. (2015) Distinct paths for basic amino acid export in Escherichia coli: YbjE (LysO) mediates export of L-lysine. Journal of Bacteriology, 197 (12). pp. 2036-2047. ISSN 0021-9193

Phulera, S. and Akif, M. and Sardesai, A.A. and Mande, S.C. (2014) Redox Proteins of Mycobacterium tuberculosis. Journal of the Indian Institute of Science, 94 (1). pp. 127-137. ISSN 0970-4140

Pradhan, Gourango and Abraham, P.R. and Shrivastava, Rohini and Mukhopadhyay, Sangita (2019) Calcium Signaling Commands Phagosome Maturation Process. International Reviews of Immunology, 38 (2). pp. 57-69. ISSN 0883-0185

Prasad, M.D. and Nurminsky, D.L. and Nagaraju, J. (2002) Characterization and molecular phylogenetic analysis of mariner elements from wild and domesticated species of silkmoths. Molecular Phylogenetics and Evolution, 25 (1). pp. 210-17. ISSN 1055-7903

Q

Qamra, R. and Taneja, B. and Mande, S.C. (2002) Identification of conserved residue patterns in small beta-barrel proteins. Protein Engineering, 15 (12). pp. 967-77. ISSN 0269-2139

R

Ram, B.M. and Ramakrishna, Gayatri (2014) Endoplasmic reticulum vacuolation and unfolded protein response leading to paraptosis like cell death in cyclosporine A treated cancer cervix cells is mediated by cyclophilin B inhibition. Biochimica et Biophysica Acta - Molecular Cell Research , 1843 (11). pp. 2497-2512. ISSN 0167-4889

Raman, R. and Kongara, R. and Kotapalli, V. and Gowrishankar, S. and Sastry, R.A. and Nagari, B. and Bashyam, M.D. (2014) Pathological stage significantly predicts survival in colorectal cancer patients: a study from two tertiary care centers in India. Colorectal Cancer, 3 (3). pp. 265-275. ISSN 1758-194X

Raman, R. and Kotapalli, V. and Adduri, R.S.R. and Gowrishankar, S. and Bashyam, L. and Chaudhary, A. and Mohana Vamsy, C. and Patnaik, S. and Srinivasulu, M. and Sastry, R.A. and Rao, S. and Vasala, A. and Kalidindi, N.R. and Pollack, J.R. and Murthy, S. and Bashyam, M.D. (2014) Evidence for possible non-canonical pathway(s) driven early-onset colorectal cancer in India. Molecular Carcinogenesis, 53 (S1). E181-E186. ISSN 1098-2744

Raman, R. and Kotapalli, V. and Mohana Vamsy, C. and Patnaik, S.C. and Srinivasulu, M. and Bashyam, M.D. (2014) A positive family history of cancer or lifestyle factors may not explain the high incidence of early-onset colorectal cancer in India. Colorectal Cancer, 3 (5). pp. 409-416. ISSN 1758-194X

Ramasarma, T. and Rao, A.V.S. and Devi, M.M. and Omkumar, R.V. and Bhagyashree, K.S. and Bhat, S.V. (2015) New insights of superoxide dismutase inhibition of pyrogallol autoxidation. Molecular and Cellular Biochemistry, 400 (1-2). pp. 277-285. ISSN 1573-4919

Ramasarma, T. and Vaigundan, D. (2019) Pathways of electron transfer and proton translocation in the action of superoxide dismutase dimer. Biochemical and Biophysical Research Communications, 514 (3). pp. 772-776. ISSN 0006-291X

Rasheed, M. and Kumar, Naveen and Kaur, Rupinder (2020) Global Secretome Characterization of the Pathogenic Yeast Candida glabrata. Journal of Proteome Research, 19 (1). pp. 49-63. ISSN 1535-3893

S

Samal, Biswajit and Chatterjee, Subhadeep (2019) New insight into bacterial social communication in natural host: Evidence for interplay of heterogeneous and unison quorum response. PLOS Genetics, 15 (9). p. 1008395. ISSN 1553-7404

Sanyal, Rajeshree and Harinarayanan, R. (2020) Activation of RelA by pppGpp as the basis for its differential toxicity over ppGpp in Escherichia coli. Journal of Biosciences, 45 (1). p. 28. ISSN 0250-5991

Satyavathi, V.V. and Minz, A. and Nagaraju, J. (2014) Nodulation: an unexplored cellular defense mechanism in insects. Cellular Signalling, 26 (8). pp. 1753-63. ISSN 1873-3913

Sen, Ranjan and Dasgupta, Dipak (2003) Simple Fluorescence Assays Probing Conformational Changes of Escherichia coli RNA Polymerase During Transcription Initiation. Methods in Enzymology, 370. pp. 598-605. ISSN 0076-6879

Shah, A.H. and Singh, Ashutosh and Dhamgaye, S. and Chauhan, N. and Vandeputte, P. and Suneetha, K.J. and Kaur, Rupinder and Mukherjee, P.K. and Chandra, J. and Ghannoum, M.A. and Sanglard, D. and Goswami, S.K. and Prasad, R. (2014) Novel role of a family of major facilitator transporters in biofilm development and virulence of Candida albicans. Biochemical journal, 460 (2). pp. 223-235. ISSN 1470-8728

Sharma, G. and Upadhyay, S. and Srilalitha, M. and Nandicoori, V.K. and Khosla, Sanjeev (2015) The interaction of mycobacterial protein Rv2966c with host chromatin is mediated through non-CpG methylation and histone H3/H4 binding. Nucleic Acids Research, 43 (8). pp. 3922-37. ISSN 1362-4962

Shashi Kiran, and Anwar, T. and Kiran, Manjari and Ramakrishna, Gayatri (2015) Sirtuin 7 in cell proliferation, stress and disease: Rise of the Seventh Sirtuin! Cellular signalling, 27 (3). pp. 673-82. ISSN 1873-3913

Shashi Kiran, and Oddi, V. and Ramakrishna, Gayatri (2015) Sirtuin 7 promotes cellular survival following genomic stress by attenuation of DNA damage, SAPK activation and p53 response. Experimental Cell Research, 331 (1). pp. 123-141. ISSN 1090-2422

Shashni, R. and Qayyum, M.Z. and Vishalini, V. and Dey, D. and Sen, Ranjan (2014) Redundancy of primary RNA-binding functions of the bacterial transcription terminator Rho. Nucleic Acids Research, 42 (15). pp. 9677-9690. ISSN 0305-1048

Singh, C.P. and Singh, J. and Nagaraju, J. (2014) bmnpv-miR-3 facilitates BmNPV infection by modulating the expression of viral P6.9 and other late genes in Bombyx mori. Insect Biochemistry and Molecular Biology, 49. pp. 59-69. ISSN 1879-0240

Singh, C.P. and Vaishna, L. and Kakkar, A. and Arunkumar, K.P. and Nagaraju, J. (2014) Characterization of antiviral and antibacterial activity of Bombyx mori seroin proteins. Cellular Microbiology, 16 (9). pp. 1354-1365. ISSN 1462-5822

Singh, S. and Kumar, P.U. and Thakur, S. and Shashi Kiran, and Sen, B. and Sharma, S. and Rao, V.V. and Poongothai , A.R. and Ramakrishna, Gayatri (2015) Expression/localization patterns of sirtuins (SIRT1, SIRT2, and SIRT7) during progression of cervical cancer and effects of sirtuin inhibitors on growth of cervical cancer cells. Tumor Biology, 36 (8). pp. 6159-6171. ISSN 1010-4283

Singh, Shweta and Godavarthi, Sapna and Kumar, Amit and Sen, Ranjan (2019) A mycobacteriophage genomics approach to identify novel mycobacteriophage proteins with mycobactericidal properties. Microbiology , 165 (7). pp. 722-736. ISSN 1350-0872

Sreejit, G. and Ahmed, A. and Parveen, N. and Jha, V. and Valluri, V.L. and Ghosh, S. and Mukhopadhyay, Sangita (2014) The ESAT-6 Protein of Mycobacterium tuberculosis Interacts with Beta-2-Microglobulin (β2M) Affecting Antigen Presentation Function of Macrophage. PLoS Pathogens, 10 (10). e1004446. ISSN 1553-7374

Srivastava, Shruti and Madhu Babu, B. and Khan, M.Z. and Vinay Kumar, N. and Mukhopadhyay, Sangita (2019) Mycobacterium tuberculosis PPE2 Protein Interacts with p67phox and Inhibits Reactive Oxygen Species Production. Journal of Immunology, 203 (5). pp. 1218-1229. ISSN 0022-1767

Srivastava, V.K. and Suneetha, K.J. and Kaur, Rupinder (2014) A systematic analysis reveals an essential role for high-affinity iron uptake system, haemolysin and CFEM domain-containing protein in iron homoeostasis and virulence in Candida glabrata. Biochemical Journal, 463 (1). pp. 103-114. ISSN 0264-6021

Stephen, J. and Girisha, K.M. and Dalal, Ashwin and Shukla, A. and Shah, H. and Srivastava, P. and Kornak, U. and Phadke, S.R. (2015) Mutations in patients with osteogenesis imperfecta from consanguineous Indian families. European Journal of Medical Genetics, 58 (1). pp. 21-27. ISSN 1878-0849

Sudhakar, A. and Ramachandran, A. and Ghosh, S. and Hasnain, S.E. and Kaufman, R.J. and Ramaiah, K.V.A. (2000) Phosphorylation of Serine 51 in Initiation Factor 2α (eIF2α) Promotes Complex Formation between eIF2α(P) and eIF2B and Causes Inhibition in the Guanine Nucleotide Exchange Activity of eIF2B†. Biochemistry, 39 (42). pp. 12929-12938. ISSN 0006-2960

Swarna Gowri, Thota and Unnikannan, C.P. and Sitalakshmi, R.T. and Manorama, R. and Bhandari, Rashna (2015) Inositol pyrophosphates regulate RNA polymerase I-mediated rRNA transcription in Saccharomyces cerevisiae. Biochemical Journal, 466 (1). pp. 105-14. ISSN 1470-8728

T

Trivedi, Jay and Alam, Aftab and Joshi, Shruti and Kumar, Pavan and Venkatraju, C. and Mainkar, P.S. and Chandrasekhar, Srivari and Chattopadhyay, Samit and Mitra, Debashis (2020) A novel isothiocyanate derivative inhibits HIV-1 gene expression and replication by modulating the nuclear matrix associated protein SMAR1. Antiviral Research, 173. p. 104648. ISSN 0166-3542

Trivedi, Jay and Mahajan, Dinesh and Jaffe, R.J. and Acharya, Arpan and Mitra, Debashis and Byrareddy, S.N. (2020) Recent Advances in the Development of Integrase Inhibitors for HIV Treatment. Current HIV/AIDS Reports, 17 (1). pp. 63-75. ISSN 1548-3568

Trivedi, Jay and Parveen, A. and Rozy, F. and Mitra, Alapani and Bal, Chandralata and Mitra, Debashis and Sharon, A. (2019) Discovery of 2-isoxazol-3-yl-acetamide analogues as heat shock protein 90 (HSP90) inhibitors with significant anti-HIV activity. European Journal of Medicinal Chemistry, 183. p. 111699. ISSN 0223-5234

V

Vanitharani, R. and Mahalingam, S. and Rafaeli, Y. and Singh, S.P. and Srinivasan, A. and Weiner, D.B. and Ayyavoo, V. (2001) HIV-1 Vpr Transactivates LTR-Directed Expression through Sequences Present within −278 to −176 and Increases Virus Replication in Vitro. Virology, 289 (2). pp. 334-342. ISSN 0042-6822

W

Wahl, M.C. and Sen, Ranjan (2019) Exploiting phage strategies to modulate bacterial transcription. Transcription, 10 (4-5). pp. 222-230. ISSN 2154-1264

Y

Yousuf, S. and Rajendra, A, and Vindal, V. and Ranjan, Akash (2015) Rv0494 is a starvation-inducible, auto-regulatory FadR-like regulator from Mycobacterium tuberculosis. Microbiology, 161 (3). pp. 463-476. ISSN 1350-0872